Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03091 Brassica carinata HOM05D007495 ORTHO05D009552 3.6e-94 348.2 171 100.0
C03p31690 Brassica napus HOM05D007495 ORTHO05D009552 4.0e-85 318.2 169 94.1
A03p26400 Brassica napus HOM05D007495 ORTHO05D009552 5.2e-85 317.8 169 94.1
BraA03t11855Z Brassica rapa HOM05D007495 ORTHO05D009552 5.2e-85 317.8 169 94.1
BcaC01g04959 Brassica carinata HOM05D007495 ORTHO05D009552 2.8e-83 312.0 169 92.9
BolC3t15512H Brassica oleracea HOM05D007495 ORTHO05D009552 2.8e-83 312.0 169 92.9
Thhalv10017338m.g Eutrema salsugineum HOM05D007495 ORTHO05D009552 2.6e-76 288.9 165 87.9
Sp4g10910 Schrenkiella parvula HOM05D007495 ORTHO05D009552 5.7e-76 287.7 163 88.3
AT2G28105 Arabidopsis thaliana HOM05D007495 ORTHO05D009552 2.0e-73 279.3 166 84.3
Carub.0004s0888 Capsella rubella HOM05D007495 ORTHO05D009552 3.5e-73 278.5 168 83.3
AL4G22050 Arabidopsis lyrata HOM05D007495 ORTHO05D009552 7.8e-73 277.3 166 82.5
CARHR120870 Cardamine hirsuta HOM05D007495 ORTHO05D009552 9.5e-71 270.4 166 81.9
THA.LOC104800583 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 6.6e-56 221.1 155 69.0
THA.LOC104808393 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 2.3e-53 212.6 165 64.8
Aa31LG5G8040 Aethionema arabicum HOM05D002446 ORTHO05D002941 1.2e-46 190.3 136 69.9
Prupe.6G109500 Prunus persica HOM05D007495 ORTHO05D009552 2.4e-42 176.0 153 59.5
GSVIVG01031491001 Vitis vinifera HOM05D007495 ORTHO05D009552 5.4e-42 174.9 148 60.1
TAR633G0300 Trochodendron aralioides HOM05D007495 ORTHO05D009552 2.1e-41 172.9 153 58.8
CiPaw.13G124600 Carya illinoinensis HOM05D007495 ORTHO05D009552 3.5e-41 172.2 155 56.8
CsaV3_6G014270 Cucumis sativus L. HOM05D007495 ORTHO05D009552 1.0e-40 170.6 153 54.9
MELO3C026944.2 Cucumis melo HOM05D007495 ORTHO05D009552 1.7e-40 169.9 153 55.6
Hma1.2p1_0051F.1_g029310 Hydrangea macrophylla HOM05D007495 ORTHO05D009552 1.7e-40 169.9 157 56.1
ClCG02G021490 Citrullus lanatus HOM05D007495 ORTHO05D009552 3.9e-40 168.7 153 56.2
Atru.chr3.3537 Acer truncatum HOM05D007495 ORTHO05D009552 6.6e-40 167.9 152 56.6
Manes.04G014200 Manihot esculenta HOM05D007495 ORTHO05D009552 8.7e-40 167.5 155 54.2
QL01p015526 Quercus lobata HOM05D007495 ORTHO05D009552 1.1e-39 167.2 153 55.6
Rhsim13G0099600 Rhododendron simsii HOM05D007495 ORTHO05D009552 1.1e-39 167.2 156 55.8
MD11G1146400 Malus domestica HOM05D007495 ORTHO05D009552 1.5e-39 166.8 159 56.6
Nn6g35262 Nelumbo nucifera HOM05D007495 ORTHO05D009552 1.5e-39 166.8 153 56.9
Dinv34730 Davidia involucrata HOM05D007495 ORTHO05D009552 2.5e-39 166.0 157 54.8
DCAR_018778 Daucus carota HOM05D007495 ORTHO05D009552 5.6e-39 164.9 167 51.5
FAN21G3793 Fragaria x ananassa HOM05D007495 ORTHO05D009552 7.3e-39 164.5 167 51.5
FAN25G1473 Fragaria x ananassa HOM05D007495 ORTHO05D009552 9.6e-39 164.1 165 52.1
Sabra04G0146300 Salix brachista HOM05D007495 ORTHO05D009552 9.6e-39 164.1 149 55.7
RcHm_v2.0_Chr5g0057451 Rosa chinensis HOM05D007495 ORTHO05D009552 1.3e-38 163.7 165 51.5
CSS0017583 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 2.1e-38 162.9 159 53.5
Ciclev10029419m.g Citrus clementina HOM05D007495 ORTHO05D009552 2.1e-38 162.9 157 53.5
Potri.004G215300 Populus trichocarpa HOM05D007495 ORTHO05D009552 2.8e-38 162.5 150 54.7
Sed0010722 Sechium edule HOM05D007495 ORTHO05D009552 4.8e-38 161.8 157 53.5
Cfa010302 Carpinus fangiana HOM05D007495 ORTHO05D009552 6.2e-38 161.4 145 55.9
Lalb_Chr24g0394861 Lupinus albus HOM05D007495 ORTHO05D009552 8.1e-38 161.0 150 55.3
Haze_23728 Corylus avellana HOM05D007495 ORTHO05D009552 1.1e-37 160.6 145 55.9
Cc01_g10460 Coffea canephora HOM05D007495 ORTHO05D009552 9.0e-37 157.5 161 52.2
Oeu018477.1 Olea europaea HOM05D007495 ORTHO05D009552 1.5e-36 156.8 154 55.2
vmacro03264 Vaccinium macrocarpon HOM05D007495 ORTHO05D009552 2.0e-36 156.4 189 46.0
Actinidia24137 Actinidia chinensis HOM05D007495 ORTHO05D009552 4.4e-36 155.2 163 52.1
Nitab4.5_0000329g0280 Nicotiana tabacum HOM05D007495 ORTHO05D009552 4.4e-36 155.2 158 50.6
Nitab4.5_0005092g0010 Nicotiana tabacum HOM05D007495 ORTHO05D009552 7.6e-36 154.5 165 50.3
Eucgr.B03939 Eucalyptus grandis HOM05D007495 ORTHO05D009552 9.9e-36 154.1 158 50.6
Lj2C1012G12 Lonicera japonica HOM05D007495 ORTHO05D009552 9.9e-36 154.1 163 50.9
Hund08367 Selenicereus undatus HOM05D007495 ORTHO05D009552 1.7e-35 153.3 159 48.4
Migut.N02567 Erythranthe guttata HOM05D007495 ORTHO05D009552 2.2e-35 152.9 155 53.5
SalBow3G3637 Salvia bowleyana HOM05D007495 ORTHO05D009552 2.2e-35 152.9 148 53.4
SGA_v2.0_scaffold436G51603 Striga asiatica HOM05D007495 ORTHO05D009552 2.2e-35 152.9 161 50.3
arahy.Tifrunner.gnm1.ann1.KUS9HA Arachis hypogaea HOM05D007495 ORTHO05D009552 2.9e-35 152.5 159 51.6
SalBow1G5708 Salvia bowleyana HOM05D007495 ORTHO05D009552 2.9e-35 152.5 151 51.7
Peaxi162Scf00892g00019 Petunia axillaris HOM05D007495 ORTHO05D009552 4.9e-35 151.8 156 53.2
MSTRG.17767 Avicennia marina HOM05D007495 ORTHO05D009552 6.4e-35 151.4 154 51.3
arahy.Tifrunner.gnm1.ann1.F5YJ3L Arachis hypogaea HOM05D007495 ORTHO05D009552 8.4e-35 151.0 148 54.1
Phvul.005G131100 Phaseolus vulgaris HOM05D007495 ORTHO05D009552 8.4e-35 151.0 159 50.9
Ah.01g003160 Amaranthus hybridus HOM05D007495 ORTHO05D009552 1.9e-34 149.8 149 53.7
Thecc.09G349500 Theobroma cacao HOM05D007495 ORTHO05D009552 1.9e-34 149.8 148 50.0
HanXRQChr09g0259381 Helianthus annuus HOM05D007495 ORTHO05D009552 2.4e-34 149.4 151 49.0
AUR62014942 Chenopodium quinoa HOM05D007495 ORTHO05D009552 1.2e-33 147.1 154 51.9
VMungo1080G0225 Vigna mungo HOM05D007495 ORTHO05D009552 1.6e-33 146.7 153 51.6
AUR62029199 Chenopodium quinoa HOM05D007495 ORTHO05D009552 6.0e-33 144.8 154 50.6
Aqoxy1G01135 Aquilegia oxysepala HOM05D007495 ORTHO05D009552 1.0e-32 144.1 145 49.0
Sopen01g017570 Solanum pennellii HOM05D007495 ORTHO05D009552 1.3e-32 143.7 156 50.6
Glyma.13G322700 Glycine max HOM05D007495 ORTHO05D009552 1.7e-32 143.3 151 49.7
PGSC0003DMG400000407 Solanum tuberosum HOM05D007495 ORTHO05D009552 1.7e-32 143.3 157 49.7
Solyc11g066240.3 Solanum lycopersicum HOM05D007495 ORTHO05D009552 3.9e-32 142.1 160 48.1
Sopen11g025970 Solanum pennellii HOM05D007495 ORTHO05D009552 3.9e-32 142.1 159 48.4
PGSC0003DMG400010906 Solanum tuberosum HOM05D007495 ORTHO05D009552 5.1e-32 141.7 158 49.4
PGR102G0900 Punica granatum HOM05D007495 ORTHO05D009552 6.6e-32 141.4 153 47.7
MBI11_g41957_MAGBIO Magnolia biondii HOM05D007495 ORTHO05D009552 1.1e-31 140.6 161 46.6
EL10Ac9g22596 Beta vulgaris HOM05D007495 ORTHO05D009552 3.3e-31 139.0 188 44.1
Lsat_1_v5_gn_2_96660 Lactuca sativa HOM05D007495 ORTHO05D009552 5.6e-31 138.3 160 46.2
HPP92_026750 Vanilla planifolia HOM05D007495 ORTHO05D009552 5.6e-31 138.3 148 48.6
Duzib147G1262 Durio zibethinus HOM05D007495 ORTHO05D009552 9.6e-31 137.5 150 46.0
ATR1132G058 Amborella trichopoda HOM05D007495 ORTHO05D009552 4.8e-30 135.2 149 45.6
PSO210G3489 Papaver somniferum HOM05D007495 ORTHO05D009552 1.4e-29 133.7 154 45.5
Duzib168G1093 Durio zibethinus HOM05D007495 ORTHO05D009552 5.3e-29 131.7 146 45.2
PSO210G2188 Papaver somniferum HOM05D007495 ORTHO05D009552 2.0e-28 129.8 154 45.5
Pp3c2_14140 Physcomitrium patens HOM05D007495 ORTHO05D009552 3.4e-28 129.0 154 43.5
FvH4_3g30910 Fragaria vesca HOM05D007495 ORTHO05D009552 3.8e-27 125.6 133 48.9
Gorai.007G006500 Gossypium raimondii HOM05D007495 ORTHO05D009552 4.9e-27 125.2 145 42.1
Gohir.A11G006200 Gossypium hirsutum HOM05D007495 ORTHO05D009552 1.6e-25 120.2 145 40.7
Gohir.D11G005300 Gossypium hirsutum HOM05D007495 ORTHO05D009552 6.0e-25 118.2 145 40.7
CAN.G546.21 Capsicum annuum HOM05D007495 ORTHO05D009552 4.8e-22 108.6 95 54.7
unitig_27.g25050 Utricularia gibba HOM05D007495 ORTHO05D009552 8.1e-22 107.8 104 51.9
CDE08G1192 Ceratophyllum demersum HOM05D007495 ORTHO05D009552 5.3e-21 105.1 143 39.9
CSS0034387 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 3.4e-20 102.4 112 48.2
AagrBONN_evm.TU.Sc2ySwM_228.3308 Anthoceros agrestis HOM05D007495 ORTHO05D009552 9.3e-18 94.4 129 37.2
Thecc.09G349300 Theobroma cacao HOM05D007495 ORTHO05D009552 3.5e-17 92.4 98 45.9
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 1.0e-16 90.9 104 43.3
SEGI_19183 Sequoiadendron giganteum HOM05D007495 ORTHO05D009552 6.7e-16 88.2 97 47.4
arahy.Tifrunner.gnm1.ann1.48A6J1 Arachis hypogaea HOM05D007495 ORTHO05D009552 8.7e-16 87.8 86 54.7
Solyc01g034070.2 Solanum lycopersicum HOM05D007495 ORTHO05D009552 9.6e-15 84.3 108 47.2
QL01p015485 Quercus lobata HOM05D007495 ORTHO05D000007 1.3e-14 84.0 84 53.6
TAR636G3027 Trochodendron aralioides HOM05D007495 ORTHO05D009552 1.4e-13 80.5 68 60.3
Actinidia07176 Actinidia chinensis HOM05D007495 ORTHO05D009552 3.0e-08 62.8 48 66.7
arahy.Tifrunner.gnm1.ann1.U22N6I Arachis hypogaea HOM05D001167 ORTHO05D014890 7.4e-07 58.2 36 72.2
arahy.Tifrunner.gnm1.ann1.SCS43X Arachis hypogaea HOM05D007495 ORTHO05D009552 1.6e-06 57.0 56 46.4


User provided reference genes

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