Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 3.3e-127 458.4 230 100.0
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 6.0e-121 437.6 230 94.8
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.8e-120 436.0 230 94.3
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 2.3e-120 435.6 230 93.9
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 2.5e-119 432.2 230 93.9
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.3e-118 429.9 230 93.5
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.2e-116 423.3 226 93.4
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.5e-116 422.9 228 91.7
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.2e-113 413.3 228 89.9
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.1e-113 412.5 229 89.5
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 3.5e-113 411.8 228 90.8
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 3.3e-111 405.2 228 88.6
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 7.4e-111 404.1 228 88.6
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 4.5e-108 394.8 228 86.4
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 4.2e-106 388.3 229 86.0
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 3.6e-105 385.2 228 86.0
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 3.9e-96 355.1 204 87.7
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 3.1e-93 345.5 228 72.8
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 3.1e-93 345.5 226 73.9
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 7.0e-93 344.4 226 73.0
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.2e-92 343.6 228 72.4
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 3.5e-92 342.0 226 73.5
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 4.5e-92 341.7 229 72.9
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 1.0e-91 340.5 225 72.4
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.3e-91 340.1 215 76.3
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.7e-91 339.7 230 71.7
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 5.0e-91 338.2 228 70.2
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.4e-90 336.7 228 71.1
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 4.2e-90 335.1 225 71.1
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 1.2e-89 333.6 225 70.7
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.6e-89 333.2 228 68.9
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.1e-89 332.8 224 71.0
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 2.7e-89 332.4 229 69.9
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 2.7e-89 332.4 226 72.1
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 2.7e-89 332.4 226 71.2
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.7e-89 332.4 226 71.2
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 3.6e-89 332.0 225 70.2
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 3.6e-89 332.0 225 71.1
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 3.6e-89 332.0 222 71.6
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 3.6e-89 332.0 224 71.0
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 4.7e-89 331.6 228 68.4
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 4.7e-89 331.6 224 70.5
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 6.1e-89 331.3 228 67.1
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 8.0e-89 330.9 226 71.2
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.0e-88 330.5 226 71.2
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.8e-88 329.7 222 73.9
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 2.3e-88 329.3 225 70.2
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.3e-88 329.3 226 71.2
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 2.3e-88 329.3 225 70.2
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 3.0e-88 328.9 224 70.1
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 3.0e-88 328.9 224 71.0
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 5.2e-88 328.2 222 70.3
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 5.2e-88 328.2 223 70.4
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 6.7e-88 327.8 228 70.2
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.1e-87 327.0 228 69.7
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 1.5e-87 326.6 229 69.0
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 2.6e-87 325.9 226 68.6
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.6e-87 325.9 226 69.5
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 3.3e-87 325.5 226 69.9
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 4.4e-87 325.1 229 68.1
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 4.4e-87 325.1 228 69.7
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.4e-87 325.1 224 70.1
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 4.4e-87 325.1 228 67.1
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 5.7e-87 324.7 226 68.6
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 5.7e-87 324.7 231 69.7
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 5.7e-87 324.7 228 67.5
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 7.4e-87 324.3 238 72.3
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 7.4e-87 324.3 224 68.3
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 7.4e-87 324.3 225 69.8
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.7e-87 323.9 224 69.6
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 9.7e-87 323.9 226 69.5
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 1.3e-86 323.6 228 68.4
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 1.7e-86 323.2 229 69.0
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.7e-86 323.2 226 69.5
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.7e-86 323.2 229 67.7
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 2.2e-86 322.8 226 68.6
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 2.2e-86 322.8 229 68.6
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.8e-86 322.4 228 68.9
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 4.8e-86 321.6 226 69.5
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 4.8e-86 321.6 222 73.0
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 6.3e-86 321.2 226 68.6
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 1.1e-85 320.5 225 68.9
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.1e-85 320.5 226 67.7
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.1e-85 320.5 226 69.0
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.4e-85 320.1 226 68.1
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.8e-85 319.7 226 65.5
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 2.4e-85 319.3 229 69.0
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.4e-85 319.3 228 68.0
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 3.1e-85 318.9 230 68.7
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 4.1e-85 318.5 225 69.8
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 7.0e-85 317.8 212 72.6
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 9.1e-85 317.4 228 69.7
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 9.1e-85 317.4 230 67.8
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.2e-84 317.0 209 71.3
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 2.6e-84 315.8 228 66.2
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 2.6e-84 315.8 229 65.5
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.5e-84 315.5 229 69.4
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 3.5e-84 315.5 226 66.4
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.5e-84 315.1 226 69.0
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 4.5e-84 315.1 224 69.2
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 5.9e-84 314.7 212 72.2
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 5.9e-84 314.7 215 71.2
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 7.7e-84 314.3 215 72.1
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 1.0e-83 313.9 215 71.6
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.0e-83 313.9 229 65.9
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 1.3e-83 313.5 225 66.2
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.2e-83 312.8 226 68.1
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.9e-83 312.4 226 69.0
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 3.8e-83 312.0 224 67.0
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 5.0e-83 311.6 228 63.6
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.5e-83 311.2 202 73.8
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 8.5e-83 310.8 226 63.7
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.2e-81 307.0 224 65.6
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 4.0e-80 302.0 224 65.6
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.2e-79 300.4 230 63.5
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 1.2e-79 300.4 258 60.9
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.0e-75 287.3 226 62.8
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 8.5e-75 284.3 310 48.7
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 1.1e-74 283.9 226 59.7
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 3.2e-74 282.3 209 66.0
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.2e-73 280.4 192 70.8
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 2.7e-73 279.3 221 62.0
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 2.7e-73 279.3 192 70.3
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 6.1e-73 278.1 228 63.6
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 8.8e-72 274.2 218 61.0
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-71 273.1 227 61.2
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.4e-71 271.9 220 63.2
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 7.7e-68 261.2 192 65.6
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.6e-65 253.4 140 89.3
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 2.7e-60 236.1 222 54.5
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 7.8e-60 234.6 152 73.7
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 5.0e-59 231.9 176 66.5
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 1.5e-58 230.3 182 63.7
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 1.4e-56 223.8 219 51.6
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 5.2e-56 221.9 220 49.5
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 7.5e-55 218.0 213 54.5
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 7.5e-55 218.0 133 78.9
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.2e-54 216.5 144 72.2
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 6.4e-54 214.9 221 49.8
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 3.2e-53 212.6 150 76.0
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.0e-51 206.1 124 79.0
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 1.5e-47 193.7 140 67.1
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 2.7e-44 183.0 144 64.6
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 1.5e-42 177.2 130 64.6
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 7.3e-42 174.9 146 57.5
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 1.8e-40 170.2 141 56.7
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 2.3e-40 169.9 109 81.7
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 8.9e-40 167.9 202 45.5
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 3.4e-39 166.0 146 58.2
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 5.8e-39 165.2 119 66.4
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 9.9e-39 164.5 102 84.3
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 7.8e-36 154.8 189 43.9
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 1.9e-34 150.2 82 92.7
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 9.5e-34 147.9 125 60.0
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 4.7e-33 145.6 151 51.0
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 4.7e-33 145.6 95 81.1
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 2.0e-31 140.2 85 77.6
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 6.4e-30 135.2 191 40.8
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.9e-29 133.7 88 71.6
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 4.2e-29 132.5 85 72.9
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 2.1e-28 130.2 104 57.7
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 3.3e-26 122.9 85 71.8
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 3.3e-26 122.9 111 60.4
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 7.3e-26 121.7 85 68.2
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 4.8e-25 119.0 91 63.7
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 4.4e-23 112.5 75 76.0
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 9.9e-23 111.3 81 64.2
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.3e-22 110.9 85 64.7
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 2.2e-22 110.2 74 71.6
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.9e-21 107.1 85 61.2
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 3.5e-20 102.8 81 65.4
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 5.1e-19 99.0 145 40.7
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 1.5e-18 97.4 220 31.4
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 2.8e-17 93.2 104 52.9
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 4.0e-16 89.4 61 68.9
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 6.9e-16 88.6 187 29.9
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 1.3e-14 84.3 51 76.5
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 3.2e-13 79.7 81 50.6
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 7.1e-13 78.6 187 29.9
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.2e-12 77.8 70 55.7
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 1.8e-11 73.9 60 60.0
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 3.9e-11 72.8 60 63.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 4.8e-09 65.9 67 52.2


User provided reference genes

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