Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03073 Brassica carinata HOM05D006639 ORTHO05D008339 7.8e-97 357.5 227 100.0
BolC3t15529H Brassica oleracea HOM05D006639 ORTHO05D008339 1.9e-50 203.4 177 67.8
C03p31860 Brassica napus HOM05D006639 ORTHO05D008339 5.5e-50 201.8 175 66.9
BcaC01g04942 Brassica carinata HOM05D006639 ORTHO05D008339 9.4e-50 201.1 177 67.2
A07p18230 Brassica napus HOM05D006639 ORTHO05D008339 3.2e-42 176.0 166 63.3
Sp4g10260 Schrenkiella parvula HOM05D006639 ORTHO05D008339 1.6e-41 173.7 173 60.7
BraA07t29539Z Brassica rapa HOM05D006639 ORTHO05D008339 2.3e-40 169.9 197 61.4
CARHR120120 Cardamine hirsuta HOM05D006639 ORTHO05D008339 2.0e-39 166.8 96 87.5
Aa31LG5G8810 Aethionema arabicum HOM05D006639 ORTHO05D008339 3.3e-39 166.0 162 61.7
AL4G21460 Arabidopsis lyrata HOM05D006639 ORTHO05D008339 3.3e-39 166.0 96 86.5
BcaB02g10091 Brassica carinata HOM05D006639 ORTHO05D008339 5.7e-39 165.2 165 60.6
BcaC02g10878 Brassica carinata HOM05D006639 ORTHO05D008339 9.7e-39 164.5 170 58.2
C04p24130 Brassica napus HOM05D006639 ORTHO05D008339 9.7e-39 164.5 170 58.2
BolC4t23910H Brassica oleracea HOM05D006639 ORTHO05D008339 9.7e-39 164.5 170 58.2
Carub.0004s0810 Capsella rubella HOM05D006639 ORTHO05D008339 9.7e-39 164.5 96 85.4
Thhalv10017865m.g Eutrema salsugineum HOM05D006639 ORTHO05D008339 1.7e-38 163.7 95 86.3
AT2G27470 Arabidopsis thaliana HOM05D006639 ORTHO05D008339 2.6e-36 156.4 181 53.0
THA.LOC104826426 Tarenaya hassleriana HOM05D006639 ORTHO05D008339 1.5e-34 150.6 96 77.1
Duzib168G1184 Durio zibethinus HOM05D006639 ORTHO05D008339 6.8e-32 141.7 96 72.9
Thecc.09G282700 Theobroma cacao HOM05D006639 ORTHO05D008339 2.6e-31 139.8 134 55.2
Gohir.A05G080500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 7.5e-31 138.3 98 71.4
Gorai.009G085200 Gossypium raimondii HOM05D006639 ORTHO05D008339 2.8e-30 136.3 96 71.9
Gohir.D05G083500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 8.3e-30 134.8 96 71.9
Sed0014981 Sechium edule HOM05D006639 ORTHO05D008339 7.0e-29 131.7 89 71.9
Potri.009G163500 Populus trichocarpa HOM05D006639 ORTHO05D008339 1.2e-28 131.0 154 52.6
Haze_23370 Corylus avellana HOM05D006639 ORTHO05D008339 1.6e-28 130.6 95 69.5
Cfa010012 Carpinus fangiana HOM05D006639 ORTHO05D008339 2.7e-28 129.8 95 69.5
Lj3g0014332 Lotus japonicus HOM05D006639 ORTHO05D008339 3.5e-28 129.4 89 71.9
PGR119G2179 Punica granatum HOM05D006639 ORTHO05D008339 3.5e-28 129.4 89 71.9
CiPaw.14G099800 Carya illinoinensis HOM05D006639 ORTHO05D008339 5.9e-28 128.6 98 66.3
Ca_19409_v3 Cicer arietinum L. HOM05D006639 ORTHO05D008339 5.9e-28 128.6 132 53.8
Manes.11G162100 Manihot esculenta HOM05D006639 ORTHO05D008339 5.9e-28 128.6 101 67.3
Ciclev10029525m.g Citrus clementina HOM05D006639 ORTHO05D008339 7.7e-28 128.3 167 47.9
Sabra09G0127600 Salix brachista HOM05D006639 ORTHO05D008339 1.3e-27 127.5 99 69.7
FAN21G1301 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.7e-27 127.1 100 66.0
TPR.G17231 Trifolium pratense HOM05D006639 ORTHO05D008339 1.7e-27 127.1 89 69.7
FvH4_3g24950 Fragaria vesca HOM05D006639 ORTHO05D008339 2.2e-27 126.7 100 67.0
FAN25G3607 Fragaria x ananassa HOM05D006639 ORTHO05D008339 2.9e-27 126.3 100 65.0
CsaV3_6G038390 Cucumis sativus L. HOM05D006639 ORTHO05D008339 3.8e-27 125.9 156 48.7
FAN16G2085 Fragaria x ananassa HOM05D006639 ORTHO05D008339 5.0e-27 125.6 100 66.0
PSO339G4282 Papaver somniferum HOM05D006639 ORTHO05D008339 6.5e-27 125.2 90 71.1
VMungo1127G0544 Vigna mungo HOM05D006639 ORTHO05D008339 8.5e-27 124.8 89 69.7
Psat7g187880 Pisum sativum HOM05D006639 ORTHO05D008339 1.1e-26 124.4 140 50.7
TWI31G0153 Tripterygium wilfordii HOM05D006639 ORTHO05D008339 1.1e-26 124.4 96 66.7
arahy.Tifrunner.gnm1.ann1.UG6V14 Arachis hypogaea HOM05D006639 ORTHO05D008339 1.5e-26 124.0 168 45.2
RcHm_v2.0_Chr5g0044741 Rosa chinensis HOM05D006639 ORTHO05D008339 1.9e-26 123.6 92 69.6
MELO3C014503.2 Cucumis melo HOM05D006639 ORTHO05D008339 2.5e-26 123.2 162 46.9
Glyma.11G183100 Glycine max HOM05D006639 ORTHO05D008339 2.5e-26 123.2 89 68.5
arahy.Tifrunner.gnm1.ann1.I7PXCJ Arachis hypogaea HOM05D006639 ORTHO05D008339 4.2e-26 122.5 157 46.5
CSS0034800 Camellia sinensis var. sinensis HOM05D006639 ORTHO05D008339 5.5e-26 122.1 171 45.6
Prupe.6G130500 Prunus persica HOM05D006639 ORTHO05D008339 5.5e-26 122.1 96 65.6
Lalb_Chr19g0136451 Lupinus albus HOM05D006639 ORTHO05D008339 7.2e-26 121.7 132 53.0
MBI17_g08336_MAGBIO Magnolia biondii HOM05D006639 ORTHO05D008339 9.4e-26 121.3 162 46.9
PSO384G2857 Papaver somniferum HOM05D006639 ORTHO05D008339 9.4e-26 121.3 90 68.9
Sc12g0004540 Simmondsia chinensis HOM05D006639 ORTHO05D008339 9.4e-26 121.3 132 53.0
CAN.G1524.3 Capsicum annuum HOM05D006639 ORTHO05D008339 1.6e-25 120.6 86 69.8
Eucgr.J00499 Eucalyptus grandis HOM05D006639 ORTHO05D008339 1.6e-25 120.6 161 47.2
Phvul.011G094600 Phaseolus vulgaris HOM05D006639 ORTHO05D008339 2.1e-25 120.2 135 50.4
HanXRQChr14g0438101 Helianthus annuus HOM05D006639 ORTHO05D008339 2.7e-25 119.8 100 66.0
Nitab4.5_0000755g0110 Nicotiana tabacum HOM05D006639 ORTHO05D008339 2.7e-25 119.8 86 68.6
Nitab4.5_0010969g0010 Nicotiana tabacum HOM05D006639 ORTHO05D008339 2.7e-25 119.8 86 68.6
Hund18759 Selenicereus undatus HOM05D006639 ORTHO05D008339 2.7e-25 119.8 90 70.0
Nn6g34885 Nelumbo nucifera HOM05D006639 ORTHO05D008339 3.6e-25 119.4 163 44.2
GSVIVG01036120001 Vitis vinifera HOM05D006639 ORTHO05D008339 4.7e-25 119.0 162 46.9
TAR636G3315 Trochodendron aralioides HOM05D006639 ORTHO05D008339 6.1e-25 118.6 166 44.0
CANSAT56G0593 Cannabis sativa HOM05D006639 ORTHO05D008339 1.4e-24 117.5 168 44.0
CANSAT56G1587 Cannabis sativa HOM05D006639 ORTHO05D008339 1.4e-24 117.5 168 44.0
Rhsim13G0112100 Rhododendron simsii HOM05D006639 ORTHO05D008339 1.4e-24 117.5 162 46.3
PGSC0003DMG400026357 Solanum tuberosum HOM05D006639 ORTHO05D008339 1.4e-24 117.5 86 67.4
Aqoxy4G02766 Aquilegia oxysepala HOM05D006639 ORTHO05D008339 1.8e-24 117.1 95 63.2
Migut.D02442 Erythranthe guttata HOM05D006639 ORTHO05D008339 1.8e-24 117.1 98 59.2
Solyc11g068480.2 Solanum lycopersicum HOM05D006639 ORTHO05D008339 1.8e-24 117.1 103 60.2
Sopen11g027190 Solanum pennellii HOM05D006639 ORTHO05D008339 1.8e-24 117.1 103 60.2
ATR0776G083 Amborella trichopoda HOM05D006639 ORTHO05D008339 2.3e-24 116.7 95 64.2
HPP92_003216 Vanilla planifolia HOM05D006639 ORTHO05D008339 2.3e-24 116.7 176 43.8
Oeu022427.1 Olea europaea HOM05D006639 ORTHO05D008339 3.0e-24 116.3 171 43.3
Atru.BG.107.p Acer truncatum HOM05D006639 ORTHO05D008339 5.2e-24 115.5 83 65.1
Ah.15g095860 Amaranthus hybridus HOM05D006639 ORTHO05D008339 5.2e-24 115.5 90 66.7
FAN11G3713 Fragaria x ananassa HOM05D006639 ORTHO05D008339 5.2e-24 115.5 95 65.3
Medtr4g052950 Medicago truncatula HOM05D006639 ORTHO05D008339 5.2e-24 115.5 158 46.8
vmacro03320 Vaccinium macrocarpon HOM05D006639 ORTHO05D008339 5.2e-24 115.5 104 64.4
ClCG02G022260 Citrullus lanatus HOM05D006639 ORTHO05D008339 6.8e-24 115.2 166 44.6
Lj2A946T24 Lonicera japonica HOM05D006639 ORTHO05D008339 1.2e-23 114.4 106 58.5
Atru.chr3.3238 Acer truncatum HOM05D006639 ORTHO05D008339 2.0e-23 113.6 87 63.2
Glyma.12G089400 Glycine max HOM05D006639 ORTHO05D008339 2.0e-23 113.6 89 64.0
DCAR_010346 Daucus carota HOM05D006639 ORTHO05D008339 2.6e-23 113.2 98 61.2
Lj2A964T5 Lonicera japonica HOM05D006639 ORTHO05D008339 4.4e-23 112.5 101 59.4
Oeu031474.1 Olea europaea HOM05D006639 ORTHO05D008339 4.4e-23 112.5 97 60.8
Lsat_1_v5_gn_2_59441 Lactuca sativa HOM05D006639 ORTHO05D008339 5.7e-23 112.1 100 61.0
QL01p012190 Quercus lobata HOM05D006639 ORTHO05D008339 5.7e-23 112.1 99 60.6
SGA_v2.0_scaffold22G09859 Striga asiatica HOM05D006639 ORTHO05D008339 7.5e-23 111.7 98 57.1
Cc01_g09080 Coffea canephora HOM05D006639 ORTHO05D008339 2.2e-22 110.2 170 44.7
MD11G1164600 Malus domestica HOM05D006639 ORTHO05D008339 2.2e-22 110.2 92 62.0
ECA238G3612 Erigeron canadensis HOM05D006639 ORTHO05D008339 3.7e-22 109.4 97 61.9
EL10Ac7g15828 Beta vulgaris HOM05D006639 ORTHO05D008339 1.1e-21 107.8 156 47.4
CDE08G1389 Ceratophyllum demersum HOM05D006639 ORTHO05D008339 1.8e-21 107.1 162 40.7
Peaxi162Scf00040g00018 Petunia axillaris HOM05D006639 ORTHO05D008339 1.8e-21 107.1 173 44.5
DCAR_006164 Daucus carota HOM05D006639 ORTHO05D008339 3.1e-21 106.3 88 60.2
Os09g0568200 Oryza sativa ssp. japonica HOM05D006639 ORTHO05D008339 3.1e-21 106.3 143 44.8
unitig_37.g12892 Utricularia gibba HOM05D006639 ORTHO05D008339 4.1e-21 105.9 96 54.2
Zm00001eb308280 Zea mays HOM05D006639 ORTHO05D008339 5.4e-21 105.5 173 41.0
Mapoly0105s0006 Marchantia polymorpha HOM05D006639 ORTHO05D008339 1.2e-20 104.4 96 55.2
Pp3c26_8280 Physcomitrium patens HOM05D006639 ORTHO05D008339 2.7e-20 103.2 92 57.6
MSTRG.18760 Avicennia marina HOM05D006639 ORTHO05D008339 4.5e-20 102.4 166 39.8
SMO340G0007 Selaginella moellendorffii HOM05D006639 ORTHO05D008339 4.5e-20 102.4 93 54.8
SEGI_32267 Sequoiadendron giganteum HOM05D006639 ORTHO05D008339 1.0e-19 101.3 92 57.6
AagrBONN_evm.TU.Sc2ySwM_362.1778 Anthoceros agrestis HOM05D006639 ORTHO05D008339 1.7e-19 100.5 132 44.7
MCO15G204 Micromonas commoda HOM05D006639 ORTHO05D008339 1.4e-16 90.9 97 49.5
PRCOL_00006285 Prasinoderma coloniale HOM05D006639 ORTHO05D008339 2.6e-15 86.7 90 48.9
ECA238G0189 Erigeron canadensis HOM05D006639 ORTHO05D008339 2.3e-11 73.6 69 56.5
Cre07.g341800 Chlamydomonas reinhardtii HOM05D006639 ORTHO05D008339 3.0e-11 73.2 89 40.4
Nn1g05220 Nelumbo nucifera HOM05D006639 ORTHO05D008339 8.0e-09 65.1 51 60.8
Nn1g05039 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.3e-08 63.5 49 61.2
Nn053s41924 Nelumbo nucifera HOM05D006639 ORTHO05D008339 8.9e-08 61.6 82 46.3
Nn1g05216 Nelumbo nucifera HOM05D006639 ORTHO05D008339 8.9e-08 61.6 82 46.3
Nn1g05215 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.2e-07 61.2 48 62.5
Lsat_1_v5_gn_6_29620 Lactuca sativa HOM05D000297 ORTHO05D000193 1.5e-07 60.8 90 30.0
Lsat_1_v5_gn_6_16641 Lactuca sativa HOM05D000297 ORTHO05D000193 9.8e-07 58.2 86 38.4
TWI59G0811 Tripterygium wilfordii HOM05D000297 ORTHO05D000193 1.7e-06 57.4 103 34.0
Lsat_1_v5_gn_9_2061 Lactuca sativa HOM05D000297 ORTHO05D000193 2.2e-06 57.0 90 34.4
Nitab4.5_0001697g0090 Nicotiana tabacum HOM05D000297 ORTHO05D000193 2.2e-06 57.0 86 34.9
ECA247G1731 Erigeron canadensis HOM05D000297 ORTHO05D000193 2.9e-06 56.6 90 34.4
HanXRQChr10g0283941 Helianthus annuus HOM05D000297 ORTHO05D000193 2.9e-06 56.6 90 34.4
Rhsim04G0220000 Rhododendron simsii HOM05D000297 ORTHO05D000193 2.9e-06 56.6 97 36.1
PGSC0003DMG400034306 Solanum tuberosum HOM05D000297 ORTHO05D012389 2.9e-06 56.6 84 35.7
Actinidia40270 Actinidia chinensis HOM05D000297 ORTHO05D000193 3.7e-06 56.2 85 37.6
Glyma.10G020100 Glycine max HOM05D000297 ORTHO05D000193 3.7e-06 56.2 85 36.5
Cc01_g20540 Coffea canephora HOM05D000297 ORTHO05D000193 4.9e-06 55.8 90 34.4
HanXRQChr15g0466061 Helianthus annuus HOM05D000297 ORTHO05D000193 4.9e-06 55.8 88 34.1
Peaxi162Scf00399g00108 Petunia axillaris HOM05D000297 ORTHO05D000193 4.9e-06 55.8 104 31.7
vmacro08128 Vaccinium macrocarpon HOM05D000297 ORTHO05D000193 4.9e-06 55.8 87 35.6
ECA233G5849 Erigeron canadensis HOM05D000297 ORTHO05D000193 6.4e-06 55.5 86 36.0
HanXRQChr07g0190141 Helianthus annuus HOM05D000297 ORTHO05D000193 6.4e-06 55.5 86 36.0
Lalb_Chr03g0028111 Lupinus albus HOM05D006639 ORTHO05D008339 6.4e-06 55.5 39 69.2
Gorai.011G189100 Gossypium raimondii HOM05D000297 ORTHO05D000193 8.3e-06 55.1 88 33.0


User provided reference genes

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