Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 2453.3 1241 100.0
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 2212.6 1258 90.9
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 2212.6 1258 90.9
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 2193.3 1267 89.7
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 2191.4 1284 88.8
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 2187.1 1283 88.6
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1965.7 1261 79.6
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1949.5 1252 80.1
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1919.4 1263 77.8
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1918.7 1261 78.4
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1717.2 1298 70.4
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1667.5 1294 67.5
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1501.9 1327 60.1
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1499.6 1331 60.3
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1498.4 1335 60.1
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1497.6 1337 59.5
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1490.7 1337 59.5
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1482.2 1339 58.6
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1479.5 1341 59.0
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1475.3 1340 59.4
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1471.8 1338 58.7
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1470.3 1343 58.3
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1466.1 1331 58.8
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1466.1 1346 59.1
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1465.7 1342 59.2
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1464.9 1319 59.2
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1460.7 1328 58.9
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1459.9 1328 58.9
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1454.5 1315 58.8
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1451.4 1345 58.7
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1449.5 1339 58.6
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1449.1 1326 57.4
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1448.3 1326 57.5
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1446.4 1307 58.1
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1446.0 1314 58.3
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1441.0 1368 57.0
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1440.2 1317 57.9
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1439.5 1332 58.2
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1438.3 1333 58.1
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1437.6 1308 58.0
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1437.2 1333 57.9
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1436.4 1326 57.2
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1434.5 1320 58.1
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1430.6 1339 58.0
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1430.2 1342 57.8
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1429.1 1327 58.0
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1428.7 1313 57.3
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1427.2 1327 57.3
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1426.0 1329 57.0
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1423.7 1307 57.4
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1419.8 1334 57.3
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1417.1 1340 56.7
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1417.1 1318 57.3
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1416.4 1340 56.9
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1411.7 1312 57.6
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1409.4 1310 57.3
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1409.0 1323 56.5
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1407.5 1349 56.4
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1402.1 1551 51.0
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1401.3 1328 57.3
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1401.0 1339 56.3
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1396.7 1305 57.0
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1395.6 1330 56.6
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1394.8 1316 57.5
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1394.8 1332 56.2
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1393.6 1345 55.5
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1385.9 1345 55.9
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1385.9 1344 55.1
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1380.2 1324 56.8
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1379.8 1344 55.4
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1376.3 1356 55.8
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1375.1 1347 55.2
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1374.0 1346 56.2
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1373.2 1405 54.0
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1372.8 1335 56.4
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1371.3 1229 59.6
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1370.1 1358 55.2
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1368.6 1306 56.4
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1367.4 1344 55.0
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1363.6 1326 55.4
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1362.4 1267 58.0
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1362.1 1376 53.9
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1353.2 1369 55.1
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1347.4 1320 55.0
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1346.3 1331 55.0
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1337.8 1321 54.0
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1331.6 1342 54.5
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1331.2 1278 55.5
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1323.9 1337 54.5
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1320.4 1342 54.5
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1317.4 1340 54.9
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1317.0 1331 53.8
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1308.9 1324 53.5
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1280.4 1340 52.5
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1277.7 1342 53.4
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1259.6 1323 53.4
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1258.8 1339 52.4
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1250.7 1296 53.2
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1246.9 1387 50.5
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1243.4 1339 52.3
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1243.0 1234 54.5
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1226.5 1168 56.9
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1145.6 1085 56.1
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1095.9 1034 58.2
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1087.8 978 58.9
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1077.4 1007 57.9
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 3.3e-306 1055.4 1272 47.6
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 1.2e-303 1047.0 936 60.0
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 1.5e-303 1046.6 1446 45.1
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 8.4e-294 1014.2 843 62.6
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 1.1e-293 1013.8 845 62.7
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 7.9e-284 981.1 826 61.1
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 1.8e-280 969.9 1363 43.3
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 2.6e-279 966.1 983 54.7
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 3.6e-276 955.7 953 56.0
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.5e-271 940.3 1348 42.0
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 2.2e-270 936.4 890 55.5
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 1.9e-269 933.3 1294 42.4
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.2e-268 930.6 1345 41.6
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 1.8e-251 873.6 749 61.5
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 9.1e-240 834.7 865 52.4
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 1.5e-229 800.8 1052 44.8
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 1.5e-218 764.2 1046 44.0
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 1.2e-212 744.6 656 60.4
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 3.7e-209 733.0 1526 34.8
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 5.8e-202 709.1 598 59.2
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 3.0e-166 590.5 658 52.3
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 6.7e-166 589.3 961 40.4
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 3.1e-155 553.9 729 47.5
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 9.1e-155 552.4 523 57.6
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 1.6e-138 498.4 382 65.7
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 3.6e-135 487.3 537 52.1
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 8.3e-132 476.1 423 60.5
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 3.6e-127 460.7 416 59.4
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 1.1e-112 412.5 362 57.5
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 5.8e-109 400.2 434 50.2
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 5.4e-91 340.5 371 51.5
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 1.2e-90 339.3 336 55.1
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 2.1e-87 328.6 319 53.0
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 2.1e-87 328.6 420 45.7
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 4.7e-87 327.4 332 53.9
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 8.1e-87 326.6 334 53.0
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 8.9e-86 323.2 327 52.6
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 2.0e-85 322.0 257 64.6
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 6.2e-71 273.9 214 67.3
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 1.1e-64 253.1 317 44.2
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 1.6e-63 249.2 368 40.5
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 2.1e-63 248.8 240 52.5
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 1.6e-58 232.6 326 41.1
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 7.2e-51 207.2 265 46.0
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 7.2e-51 207.2 212 54.2
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 5.9e-45 187.6 204 52.0
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 2.4e-38 165.6 115 73.9
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 8.8e-33 147.1 136 52.9
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 2.2e-31 142.5 201 42.8
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 6.7e-25 120.9 83 66.3
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.1e-19 103.6 86 60.5
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 7.2e-19 100.9 229 31.4
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 9.4e-19 100.5 114 43.9
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 1.7e-12 79.7 104 41.3
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 8.6e-12 77.4 66 51.5
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 5.5e-11 74.7 61 52.5
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 5.5e-11 74.7 61 52.5
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 9.5e-11 73.9 61 52.5
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 9.5e-11 73.9 58 53.4
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 1.0e-09 70.5 57 52.6
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 2.3e-09 69.3 237 27.4
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 5.2e-09 68.2 73 47.9
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 1.1e-06 60.5 64 53.1
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 2.4e-06 59.3 131 36.6


User provided reference genes

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