Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 1.2e-59 233.0 123 100.0
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 7.1e-52 207.2 124 89.5
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 3.5e-51 204.9 124 87.9
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 3.5e-51 204.9 124 87.9
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 4.6e-51 204.5 124 87.9
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 4.6e-51 204.5 124 87.9
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 4.6e-51 204.5 124 87.9
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 1.5e-49 199.5 124 84.7
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 1.4e-47 193.0 123 83.7
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 3.1e-47 191.8 123 82.9
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 9.0e-47 190.3 123 82.1
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 9.3e-44 180.3 124 79.0
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 1.6e-40 169.5 126 75.4
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 7.9e-35 150.6 123 65.9
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 6.2e-32 141.0 124 65.3
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 2.0e-30 136.0 126 63.5
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.6e-30 135.6 106 67.9
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.6e-30 135.6 106 67.9
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.4e-30 135.2 128 64.1
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 5.8e-30 134.4 127 63.8
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.8e-30 134.4 127 63.8
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 7.6e-30 134.0 127 60.6
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 1.0e-29 133.7 130 60.8
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 1.0e-29 133.7 127 66.1
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.0e-29 133.7 127 63.8
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.0e-29 133.7 126 62.7
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 1.3e-29 133.3 126 59.5
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 1.7e-29 132.9 126 61.9
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 2.9e-29 132.1 127 59.8
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.9e-29 132.1 106 65.1
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 3.8e-29 131.7 122 61.5
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 3.8e-29 131.7 98 69.4
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.8e-29 131.7 126 63.5
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.8e-29 131.7 127 65.4
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.9e-29 131.3 124 61.3
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 4.9e-29 131.3 124 61.3
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 4.9e-29 131.3 125 60.0
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.5e-29 131.0 126 64.3
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.4e-29 130.6 127 63.8
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.4e-29 130.6 127 65.4
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.4e-29 130.6 127 65.4
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.1e-28 130.2 95 72.6
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.1e-28 130.2 95 71.6
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.1e-28 130.2 95 71.6
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 1.1e-28 130.2 127 61.4
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.4e-28 129.8 125 60.8
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 1.4e-28 129.8 103 67.0
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.9e-28 129.4 101 66.3
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.9e-28 129.4 107 67.3
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 1.9e-28 129.4 127 58.3
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 1.9e-28 129.4 126 59.5
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 1.9e-28 129.4 126 62.7
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.9e-28 129.4 126 62.7
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 2.5e-28 129.0 128 58.6
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.5e-28 129.0 127 64.6
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 2.5e-28 129.0 129 61.2
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 2.5e-28 129.0 127 59.1
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 3.2e-28 128.6 106 64.2
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 3.2e-28 128.6 123 61.0
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 3.2e-28 128.6 125 59.2
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.2e-28 128.3 127 64.6
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 5.5e-28 127.9 128 60.2
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 5.5e-28 127.9 128 59.4
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 7.1e-28 127.5 125 60.0
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 7.1e-28 127.5 125 63.2
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 7.1e-28 127.5 129 57.4
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 7.1e-28 127.5 124 59.7
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 9.3e-28 127.1 95 71.6
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 9.3e-28 127.1 124 58.1
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 1.2e-27 126.7 124 58.9
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.2e-27 126.7 127 59.1
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.2e-27 126.7 125 59.2
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.6e-27 126.3 94 73.4
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.6e-27 126.3 123 57.7
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 2.1e-27 125.9 128 56.2
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 2.7e-27 125.6 127 57.5
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 3.5e-27 125.2 124 63.7
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 3.5e-27 125.2 96 70.8
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 3.5e-27 125.2 127 58.3
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 3.5e-27 125.2 124 60.5
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 4.6e-27 124.8 105 65.7
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 6.0e-27 124.4 101 67.3
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 6.0e-27 124.4 98 67.3
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 6.0e-27 124.4 127 59.8
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 7.9e-27 124.0 123 60.2
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 7.9e-27 124.0 127 56.7
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 7.9e-27 124.0 127 55.9
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 7.9e-27 124.0 128 57.0
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 7.9e-27 124.0 128 57.0
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.0e-26 123.6 123 60.2
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 1.0e-26 123.6 127 60.6
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.3e-26 123.2 125 56.8
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 1.3e-26 123.2 113 58.4
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 1.3e-26 123.2 102 62.7
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 1.3e-26 123.2 110 65.5
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 2.3e-26 122.5 125 57.6
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.3e-26 122.5 95 68.4
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 2.3e-26 122.5 97 68.0
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 2.3e-26 122.5 127 59.1
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 3.0e-26 122.1 126 56.3
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 3.0e-26 122.1 112 61.6
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.0e-26 122.1 127 59.8
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 3.9e-26 121.7 127 59.1
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 3.9e-26 121.7 97 66.0
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 6.7e-26 120.9 111 60.4
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 1.1e-25 120.2 100 66.0
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.5e-25 119.8 100 68.0
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 1.5e-25 119.8 93 67.7
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.5e-25 119.8 101 64.4
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.5e-25 119.8 130 57.7
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.9e-25 119.4 129 55.8
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 2.5e-25 119.0 124 59.7
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.5e-25 119.0 123 56.9
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 7.4e-25 117.5 123 56.1
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 7.4e-25 117.5 94 68.1
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 9.7e-25 117.1 123 58.5
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 9.7e-25 117.1 97 67.0
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 1.6e-24 116.3 112 58.0
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 1.6e-24 116.3 123 57.7
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 2.2e-24 115.9 93 67.7
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.8e-24 115.5 129 55.8
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.8e-24 115.5 125 56.8
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 3.7e-24 115.2 125 56.0
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 4.8e-24 114.8 97 64.9
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 4.8e-24 114.8 108 60.2
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 6.3e-24 114.4 100 64.0
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 6.3e-24 114.4 132 52.3
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 1.1e-23 113.6 98 65.3
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.1e-23 113.6 121 55.4
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 1.1e-23 113.6 122 54.1
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 1.8e-23 112.8 125 55.2
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 2.4e-23 112.5 123 54.5
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 3.1e-23 112.1 94 64.9
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 4.1e-23 111.7 126 54.8
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 6.9e-23 110.9 130 54.6
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 1.2e-22 110.2 120 55.0
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 2.0e-22 109.4 98 63.3
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 2.6e-22 109.0 122 55.7
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 3.4e-22 108.6 96 59.4
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 5.0e-21 104.8 93 62.4
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 6.5e-21 104.4 129 50.4
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 8.5e-21 104.0 97 61.9
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 4.2e-20 101.7 107 53.3
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 7.2e-20 100.9 94 59.6
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 3.6e-19 98.6 56 94.6
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 2.3e-18 95.9 126 46.8
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 5.1e-18 94.7 94 57.4
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 1.1e-17 93.6 94 57.4
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 4.3e-17 91.7 126 44.4
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 9.7e-17 90.5 123 41.5
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 4.8e-16 88.2 103 52.4
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 2.4e-15 85.9 107 45.8
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 1.2e-14 83.6 72 63.9
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.5e-14 83.2 106 50.9
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 4.5e-14 81.6 126 45.2
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 8.5e-13 77.4 86 48.8
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 1.1e-12 77.0 123 41.5
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 1.9e-12 76.3 55 76.4
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 1.1e-09 67.0 106 40.6
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 2.0e-09 66.2 75 54.7
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 1.3e-08 63.5 106 40.6
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 3.1e-07 58.9 71 43.7


User provided reference genes

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