Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 4.7e-169 597.8 312 100.0
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 6.8e-83 311.6 399 51.9
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 5.7e-82 308.5 396 51.5
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 1.7e-81 307.0 396 51.3
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 3.7e-81 305.8 399 51.1
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 3.7e-81 305.8 211 80.6
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 2.0e-74 283.5 213 77.5
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 2.4e-72 276.6 213 73.2
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 1.6e-71 273.9 216 72.7
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 1.9e-69 266.9 216 71.3
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 9.8e-66 254.6 213 69.0
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 4.0e-59 232.6 212 63.7
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 1.5e-58 230.7 209 64.6
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 6.6e-54 215.3 240 57.1
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 9.3e-40 168.3 220 47.3
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 7.8e-39 165.2 210 49.5
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 1.8e-35 154.1 227 42.3
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 2.4e-35 153.7 223 43.9
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 4.0e-35 152.9 224 43.3
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 6.9e-35 152.1 223 43.9
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 4.5e-34 149.4 222 44.6
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 9.9e-34 148.3 198 44.9
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 1.7e-33 147.5 222 41.4
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 2.2e-33 147.1 225 42.7
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 3.8e-33 146.4 212 42.9
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 4.9e-33 146.0 198 44.4
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 8.4e-33 145.2 147 49.7
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 1.1e-32 144.8 150 50.7
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 1.1e-32 144.8 285 35.8
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 1.1e-32 144.8 220 40.9
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 5.4e-32 142.5 200 42.5
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 1.2e-31 141.4 219 42.5
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 1.2e-31 141.4 224 42.0
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 1.6e-31 141.0 199 43.7
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 1.6e-31 141.0 182 46.2
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 2.1e-31 140.6 203 44.3
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 2.1e-31 140.6 223 40.4
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.5e-31 139.8 254 38.6
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 4.6e-31 139.4 193 41.5
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 4.6e-31 139.4 257 38.1
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 4.6e-31 139.4 222 40.5
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 6.0e-31 139.0 180 45.6
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.9e-31 138.7 253 37.5
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 7.9e-31 138.7 199 43.2
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 1.8e-30 137.5 222 39.6
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 3.0e-30 136.7 209 41.1
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 5.1e-30 136.0 143 50.3
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 6.7e-30 135.6 217 41.9
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 1.1e-29 134.8 181 44.8
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 1.5e-29 134.4 182 43.4
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 4.3e-29 132.9 185 41.6
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 4.3e-29 132.9 185 41.6
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 5.6e-29 132.5 215 37.7
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 7.4e-29 132.1 225 40.4
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 1.3e-28 131.3 209 41.1
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 1.6e-28 131.0 255 38.0
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 1.6e-28 131.0 209 42.6
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 2.8e-28 130.2 222 40.1
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 3.7e-28 129.8 204 39.7
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 4.8e-28 129.4 225 37.3
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 8.1e-28 128.6 212 40.1
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 8.1e-28 128.6 221 40.3
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 1.1e-27 128.3 229 41.0
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.1e-27 128.3 185 43.2
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 1.8e-27 127.5 200 42.5
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 2.4e-27 127.1 142 48.6
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 4.0e-27 126.3 142 44.4
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 6.9e-27 125.6 144 45.8
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 9.0e-27 125.2 216 37.0
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 9.0e-27 125.2 211 39.3
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 2.0e-26 124.0 198 41.9
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 2.0e-26 124.0 216 40.7
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 2.6e-26 123.6 208 38.9
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 2.6e-26 123.6 208 38.9
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 7.6e-26 122.1 211 38.9
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 1.7e-25 120.9 210 40.5
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 1.7e-25 120.9 142 45.8
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.4e-25 119.0 235 36.2
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 1.1e-24 118.2 142 46.5
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 4.2e-24 116.3 125 46.4
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 9.3e-24 115.2 197 40.6
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 9.3e-24 115.2 147 44.2
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 9.3e-24 115.2 124 47.6
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.0e-22 111.7 123 47.2
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 1.0e-22 111.7 184 39.1
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 1.8e-22 110.9 113 50.4
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 3.9e-22 109.8 185 41.1
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 5.1e-22 109.4 248 35.9
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 5.1e-22 109.4 197 41.6
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 5.6e-21 105.9 202 38.6
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 5.6e-21 105.9 124 45.2
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 4.0e-19 99.8 125 46.4
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 6.9e-19 99.0 140 42.1
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 1.0e-17 95.1 148 42.6
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.2e-17 94.0 206 35.9
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 1.1e-16 91.7 117 41.0
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 1.4e-16 91.3 191 37.7
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 3.2e-16 90.1 123 44.7
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 2.7e-15 87.0 151 40.4
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 6.0e-15 85.9 195 33.3
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 2.9e-09 67.0 126 34.1
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 5.0e-09 66.2 154 35.1
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 2.1e-07 60.8 50 52.0
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 2.3e-06 57.4 192 27.1
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 3.9e-06 56.6 50 52.0
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 5.1e-06 56.2 212 25.5
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 6.7e-06 55.8 193 28.0
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 8.7e-06 55.5 61 42.6


User provided reference genes

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