Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 2.8e-280 968.0 502 100.0
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 3.7e-256 887.9 483 97.1
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 3.4e-254 881.3 489 95.9
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 7.7e-254 880.2 489 95.7
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 1.0e-250 869.8 488 95.3
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 2.0e-249 865.5 488 94.9
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 1.4e-247 859.4 489 93.9
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 1.1e-236 823.2 491 90.0
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 2.6e-225 785.4 490 85.3
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 5.7e-225 784.3 491 84.9
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 2.0e-222 775.8 494 83.8
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 1.1e-210 736.9 489 79.1
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 5.4e-207 724.5 488 78.1
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 9.0e-186 654.1 489 68.9
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 3.5e-182 642.1 486 68.7
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 3.5e-182 642.1 481 68.6
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 3.9e-181 638.6 484 69.2
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 1.5e-180 636.7 486 68.7
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 1.9e-180 636.3 485 68.5
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 9.6e-180 634.0 483 67.1
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 2.8e-179 632.5 476 68.5
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 2.8e-179 632.5 485 67.8
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 2.8e-179 632.5 485 67.8
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 4.8e-179 631.7 475 68.2
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 1.8e-178 629.8 484 67.1
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 4.0e-178 628.6 482 68.5
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 6.9e-178 627.9 490 67.3
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 4.5e-177 625.2 474 67.5
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 4.5e-177 625.2 476 67.9
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 4.5e-177 625.2 476 67.9
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 3.8e-176 622.1 484 66.5
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 6.4e-176 621.3 483 66.5
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.9e-175 619.8 483 66.3
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 1.6e-174 616.7 488 66.6
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 1.6e-174 616.7 484 66.1
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 2.1e-174 616.3 487 65.3
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 4.6e-174 615.1 482 67.0
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 7.9e-174 614.4 480 66.5
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 7.9e-174 614.4 485 66.2
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 7.4e-172 607.8 483 64.8
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 5.3e-170 601.7 483 64.4
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 1.5e-169 600.1 485 63.9
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 1.3e-168 597.0 482 64.5
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 1.3e-168 597.0 482 64.1
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 4.9e-168 595.1 485 64.3
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 3.2e-167 592.4 484 65.3
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 9.3e-167 590.9 509 60.5
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 1.2e-166 590.5 496 62.7
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 2.1e-166 589.7 483 64.0
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 3.5e-166 589.0 483 64.2
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 7.9e-166 587.8 483 63.8
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 1.3e-165 587.0 458 65.5
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 1.8e-165 586.6 487 62.6
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 1.8e-165 586.6 484 63.4
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 1.8e-165 586.6 487 61.6
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 2.3e-165 586.3 483 63.4
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 2.3e-165 586.3 518 62.2
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 3.0e-165 585.9 483 63.4
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 5.6e-164 581.6 482 62.9
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 1.3e-163 580.5 573 56.9
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.6e-163 580.1 483 64.4
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 2.1e-163 579.7 486 62.6
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 1.4e-162 577.0 490 61.2
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 3.1e-162 575.9 485 63.5
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 9.0e-162 574.3 546 58.2
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 3.4e-161 572.4 486 62.6
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 3.4e-161 572.4 405 72.1
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 5.8e-161 571.6 485 60.6
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 2.2e-160 569.7 487 62.2
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 6.5e-160 568.2 481 60.3
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 1.4e-159 567.0 490 62.4
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 1.9e-159 566.6 482 61.6
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 1.9e-159 566.6 489 61.1
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 1.6e-158 563.5 479 61.4
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 1.6e-158 563.5 483 61.7
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 7.9e-158 561.2 460 64.3
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 1.3e-155 553.9 494 61.3
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 1.1e-154 550.8 490 60.0
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 9.0e-154 547.7 485 60.0
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 2.0e-153 546.6 413 67.8
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.6e-153 546.2 524 54.8
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 4.5e-153 545.4 490 60.0
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 2.9e-152 542.7 481 59.0
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 1.1e-151 540.8 428 66.8
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 1.9e-151 540.0 480 59.2
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 3.2e-151 539.3 486 60.9
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 2.7e-150 536.2 487 57.9
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 1.0e-149 534.3 483 58.2
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 5.7e-148 528.5 545 56.0
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 9.7e-148 527.7 477 59.5
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 2.2e-147 526.6 489 58.3
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 9.1e-146 521.2 474 59.7
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 1.8e-141 506.9 392 66.8
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 8.2e-139 498.0 489 55.0
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 4.5e-137 492.3 394 66.8
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 4.5e-137 492.3 497 54.9
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 1.0e-136 491.1 506 53.2
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 9.1e-130 468.0 385 62.9
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 1.0e-128 464.5 435 58.9
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 5.0e-128 462.2 491 50.5
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 6.5e-128 461.8 484 53.9
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 2.3e-125 453.4 504 50.0
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 4.8e-115 419.1 367 59.1
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 2.4e-114 416.8 433 54.7
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 7.7e-113 411.8 293 73.4
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 7.7e-113 411.8 380 57.1
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 2.9e-112 409.8 306 71.2
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 4.7e-110 402.5 503 45.7
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 1.7e-104 384.0 241 80.5
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.5e-100 370.9 383 52.5
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 3.2e-98 363.2 352 53.7
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 1.0e-96 358.2 530 40.9
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 1.9e-87 327.4 495 40.2
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 8.1e-86 322.0 264 61.7
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 2.0e-84 317.4 462 43.9
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 1.6e-81 307.8 293 59.4
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 4.6e-81 306.2 240 63.8
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 7.8e-81 305.4 195 77.4
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 5.2e-77 292.7 192 85.4
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 3.4e-76 290.0 279 55.9
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 1.1e-74 285.0 551 36.1
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 1.9e-74 284.3 217 65.4
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 1.9e-74 284.3 217 65.4
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 9.2e-74 282.0 324 53.4
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 8.1e-70 268.9 218 61.9
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 4.2e-66 256.5 291 48.1
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 4.6e-65 253.1 258 55.4
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 1.0e-56 225.3 192 64.1
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 1.1e-55 221.9 626 29.1
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 3.1e-53 213.8 227 52.9
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 4.2e-50 203.4 181 56.9
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 9.3e-50 202.2 178 62.9
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 4.6e-49 199.9 147 70.7
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 9.0e-45 185.7 139 68.3
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 1.3e-43 181.8 155 65.2
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 6.5e-43 179.5 157 64.3
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 7.1e-42 176.0 286 40.6
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 3.5e-41 173.7 117 75.2
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.1e-37 160.6 245 42.4
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 4.1e-37 160.2 266 41.0
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 6.5e-35 152.9 168 50.0
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 8.8e-32 142.5 150 56.7
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 5.0e-27 126.7 331 33.8
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.5e-26 124.4 244 37.7
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 3.9e-24 117.1 125 49.6
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 5.7e-23 113.2 253 33.2
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 2.4e-21 107.8 108 56.5
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 1.5e-20 105.1 52 90.4
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 4.5e-20 103.6 57 82.5
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 4.5e-20 103.6 57 82.5
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 5.0e-19 100.1 93 52.7
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 1.3e-14 85.5 93 44.1
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 1.7e-14 85.1 54 70.4
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 2.8e-14 84.3 59 69.5
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 3.1e-13 80.9 74 52.7
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 2.0e-12 78.2 69 58.0
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 5.0e-11 73.6 54 64.8
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 8.5e-11 72.8 62 58.1
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 2.5e-10 71.2 87 47.1
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 2.5e-10 71.2 49 65.3
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 2.7e-09 67.8 54 57.4
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 4.0e-08 63.9 59 52.5
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 6.8e-08 63.2 55 61.8
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 1.2e-07 62.4 52 55.8
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 1.2e-07 62.4 45 60.0
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 9.7e-07 59.3 51 49.0
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 4.8e-06 57.0 48 60.4
arahy.Tifrunner.gnm1.ann1.4Z5MNN Arachis hypogaea HOM05D001329 ORTHO05D004946 8.3e-06 56.2 27 88.9


User provided reference genes

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