Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 8.9e-237 823.2 399 100.0
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 3.5e-233 811.2 395 99.2
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.5e-220 769.2 386 96.6
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 2.2e-219 765.4 385 96.6
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 2.2e-219 765.4 385 96.6
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.1e-218 763.1 386 95.9
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 7.8e-217 756.9 385 95.3
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.0e-216 756.5 385 95.6
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.2e-212 743.0 387 93.3
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 4.3e-207 724.5 396 88.4
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 4.3e-207 724.5 396 88.4
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 5.6e-207 724.2 389 90.0
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.2e-206 723.0 390 90.3
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 8.9e-205 716.8 386 91.2
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 5.8e-204 714.1 391 89.8
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.1e-202 709.9 394 87.8
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 4.6e-201 704.5 385 89.1
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 3.1e-197 691.8 396 85.6
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 7.6e-188 660.6 390 83.3
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 2.2e-171 605.9 387 76.2
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 4.6e-169 598.2 393 74.8
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.0e-168 597.0 392 74.5
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 2.5e-167 592.4 384 74.0
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 2.8e-166 589.0 395 73.7
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 2.8e-166 589.0 365 76.7
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 4.5e-164 581.6 392 72.4
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 5.9e-164 581.3 381 73.8
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 5.9e-164 581.3 388 71.9
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 7.7e-164 580.9 388 73.7
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.7e-163 579.7 388 72.4
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.8e-163 578.6 392 71.9
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.5e-163 577.8 392 72.2
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.1e-162 577.0 398 71.1
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.4e-162 576.6 388 72.7
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 1.4e-162 576.6 389 73.3
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.4e-162 576.6 365 74.2
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 2.5e-162 575.9 393 72.0
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 4.2e-162 575.1 365 75.1
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 7.9e-161 570.9 367 74.7
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.0e-160 570.5 390 71.5
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 1.4e-160 570.1 359 75.5
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 1.8e-160 569.7 377 73.7
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 5.1e-160 568.2 388 71.1
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.3e-159 565.5 369 73.7
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 3.3e-159 565.5 390 71.8
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 2.2e-158 562.8 383 71.8
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.2e-158 562.8 383 71.8
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.8e-158 562.4 373 74.3
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 2.8e-158 562.4 404 70.0
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 3.7e-158 562.0 352 76.1
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 4.8e-158 561.6 341 77.4
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 4.8e-158 561.6 362 74.0
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.4e-157 560.1 342 78.1
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.8e-157 559.7 343 77.0
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 5.3e-157 558.1 390 69.5
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 5.3e-157 558.1 338 78.4
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.5e-156 556.6 346 75.4
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 4.5e-156 555.1 361 73.1
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.9e-156 554.7 344 76.2
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.9e-155 552.4 338 77.5
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 1.1e-154 550.4 363 73.6
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.9e-154 549.7 384 69.0
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 2.5e-154 549.3 377 70.0
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 9.4e-154 547.4 363 72.7
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.2e-153 547.0 378 69.3
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 1.2e-153 547.0 405 66.4
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.6e-153 546.6 397 69.0
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 4.7e-153 545.0 363 70.0
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 2.3e-152 542.7 361 72.0
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 2.0e-151 539.7 377 69.0
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.3e-151 538.9 365 72.6
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 5.7e-151 538.1 397 67.0
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.3e-150 537.0 389 65.8
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.3e-150 537.0 373 70.0
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.8e-150 535.8 339 74.6
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 2.8e-150 535.8 407 63.9
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.4e-149 533.5 387 65.4
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 3.1e-149 532.3 355 71.3
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 4.1e-149 531.9 387 65.4
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 4.1e-149 531.9 407 63.9
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 4.1e-149 531.9 395 69.4
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 1.5e-148 530.0 391 66.5
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 2.0e-148 529.6 392 65.3
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.0e-148 529.6 355 71.3
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 2.6e-148 529.3 321 75.7
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 3.5e-148 528.9 356 70.8
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 7.7e-148 527.7 339 72.9
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 2.9e-147 525.8 392 64.5
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 6.5e-147 524.6 334 72.5
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 1.1e-146 523.9 397 64.7
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.9e-146 523.1 341 73.6
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.1e-145 519.6 367 68.9
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 6.1e-145 518.1 385 65.5
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.0e-144 517.3 360 67.5
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.0e-144 517.3 385 65.7
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.8e-144 516.5 342 72.8
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.3e-144 516.2 388 65.7
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.9e-144 515.4 394 65.0
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.7e-142 510.0 392 63.0
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 2.2e-142 509.6 378 65.1
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.8e-142 509.2 387 65.4
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 2.4e-141 506.1 373 66.8
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.4e-141 506.1 326 73.9
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.3e-141 505.0 310 74.8
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 5.3e-141 505.0 315 74.6
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 9.1e-141 504.2 366 67.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.6e-140 503.4 344 68.3
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 4.5e-140 501.9 361 65.9
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 4.5e-140 501.9 367 65.4
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.5e-138 496.9 343 68.5
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 3.2e-138 495.7 383 64.5
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 4.2e-138 495.4 381 64.6
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 2.6e-135 486.1 336 69.9
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 3.8e-131 472.2 366 62.3
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 1.9e-130 469.9 368 63.0
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.2e-129 467.2 348 65.5
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 2.7e-129 466.1 362 62.4
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 7.0e-125 451.4 372 60.5
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 2.0e-124 449.9 390 58.2
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 5.9e-124 448.4 322 65.8
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 6.6e-123 444.9 368 60.1
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 6.8e-120 434.9 384 57.0
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.5e-119 433.7 283 72.8
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.2e-118 429.9 337 60.8
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 3.2e-117 426.0 348 59.8
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 9.2e-117 424.5 232 82.8
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.3e-112 409.8 305 65.2
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 4.9e-110 402.1 324 58.3
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 4.1e-109 399.1 390 54.6
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 5.6e-106 388.7 381 54.1
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 3.6e-105 386.0 315 60.6
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.4e-102 375.2 196 87.2
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 2.7e-100 369.8 229 78.6
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 3.9e-99 365.9 208 81.7
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 2.5e-98 363.2 186 90.9
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 3.2e-93 346.3 201 79.1
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.1e-88 329.7 272 59.9
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.8e-86 322.8 235 68.9
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 6.6e-83 312.0 228 64.9
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 7.6e-79 298.5 398 40.5
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.0e-72 276.2 230 60.0
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 9.9e-71 271.6 302 44.4
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 9.3e-69 265.0 231 59.3
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 1.8e-67 260.8 343 39.7
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 6.2e-65 252.3 222 57.2
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 2.1e-60 237.3 383 36.8
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 4.1e-56 223.0 198 57.1
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 2.1e-52 210.7 350 36.0
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.8e-48 197.6 135 71.9
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.8e-35 154.5 148 54.7
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 7.0e-32 142.5 142 54.2
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.5e-30 136.0 116 62.1
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.2e-23 115.2 64 81.2
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.5e-21 108.2 57 84.2
BraA09t38543Z Brassica rapa HOM05D004580 ORTHO05D107497 3.4e-10 70.5 142 38.7
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 2.9e-06 57.4 58 56.9


User provided reference genes

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