Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02747 Brassica carinata HOM05D003553 ORTHO05D039541 3.9e-90 334.7 162 100.0
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 1.9e-36 156.4 165 52.7
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 7.9e-35 151.0 181 49.2
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 7.9e-35 151.0 181 49.2
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 1.0e-34 150.6 181 48.6
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 1.0e-34 150.6 181 48.6
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 1.0e-34 150.6 181 48.6
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 1.0e-34 150.6 181 48.6
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 1.0e-34 150.6 181 48.6
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 1.0e-34 150.6 181 48.6
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 1.0e-34 150.6 181 48.6
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 1.0e-34 150.6 181 48.6
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 1.0e-34 150.6 181 48.6
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 1.8e-34 149.8 181 49.2
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 3.9e-34 148.7 186 47.3
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 3.9e-34 148.7 181 48.6
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 6.7e-34 147.9 181 48.6
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 1.1e-33 147.1 181 48.6
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 1.1e-33 147.1 181 47.5
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 1.7e-32 143.3 181 47.0
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 4.8e-32 141.7 157 49.7
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 4.8e-32 141.7 181 46.4
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 8.2e-32 141.0 172 48.8
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 8.2e-32 141.0 181 46.4
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 1.2e-30 137.1 172 45.9
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 1.6e-30 136.7 172 47.7
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 2.6e-30 136.0 181 44.8
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 5.9e-30 134.8 181 44.2
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.0e-29 134.0 181 43.6
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 1.3e-29 133.7 181 44.2
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 1.3e-29 133.7 181 44.2
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 1.3e-29 133.7 181 43.6
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 1.3e-29 133.7 181 44.2
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 1.3e-29 133.7 181 43.6
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 1.3e-29 133.7 181 44.2
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 2.2e-29 132.9 181 44.2
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 2.9e-29 132.5 181 43.6
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 1.1e-28 130.6 181 42.0
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 2.5e-28 129.4 172 45.3
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 2.5e-28 129.4 181 42.0
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 1.2e-27 127.1 181 42.0
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 6.1e-27 124.8 172 44.2
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 4.0e-26 122.1 172 44.2
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 4.8e-24 115.2 147 42.9
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 6.3e-24 114.8 171 39.8
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 1.1e-23 114.0 171 39.8
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 1.1e-23 114.0 171 40.4
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.4e-23 113.6 171 39.8
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.4e-23 113.6 171 39.8
Gohir.D12G178408 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.4e-23 113.6 171 39.8
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 1.8e-23 113.2 171 40.4
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 5.3e-23 111.7 172 40.1
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 5.3e-23 111.7 147 42.2
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 7.0e-23 111.3 171 39.2
Haze_07373 Corylus avellana HOM05D003553 ORTHO05D005072 9.1e-23 110.9 181 37.6
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 1.6e-22 110.2 171 39.8
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 1.6e-22 110.2 180 37.8
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 1.6e-22 110.2 171 39.2
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 2.0e-22 109.8 137 42.3
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 2.0e-22 109.8 171 38.6
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 2.7e-22 109.4 171 38.6
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 2.7e-22 109.4 182 37.4
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 2.7e-22 109.4 171 38.6
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 3.5e-22 109.0 181 36.5
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 4.5e-22 108.6 171 39.8
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 1.0e-21 107.5 172 39.5
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 1.3e-21 107.1 171 39.2
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 2.2e-21 106.3 171 38.0
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 2.2e-21 106.3 181 34.8
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 2.2e-21 106.3 171 38.0
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 2.2e-21 106.3 171 38.0
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 3.8e-21 105.5 173 37.6
Migut.I00129 Erythranthe guttata HOM05D003553 ORTHO05D005072 5.0e-21 105.1 181 34.3
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 5.0e-21 105.1 161 38.5
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 5.0e-21 105.1 161 37.3
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 6.5e-21 104.8 173 37.6
Ah.08g217620 Amaranthus hybridus HOM05D003553 ORTHO05D005072 1.1e-20 104.0 180 34.4
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 1.1e-20 104.0 170 37.6
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 1.1e-20 104.0 171 37.4
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 1.1e-20 104.0 171 37.4
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 1.5e-20 103.6 171 36.3
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 2.5e-20 102.8 168 35.7
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.5e-20 102.8 132 44.7
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 3.2e-20 102.4 214 34.6
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 3.2e-20 102.4 171 36.3
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 3.2e-20 102.4 171 36.8
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 4.2e-20 102.1 171 36.3
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 5.5e-20 101.7 171 35.7
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 5.5e-20 101.7 144 40.3
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 1.2e-19 100.5 180 33.9
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 1.2e-19 100.5 171 36.3
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 1.6e-19 100.1 171 35.1
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 1.6e-19 100.1 200 33.5
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 2.1e-19 99.8 171 35.1
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 4.7e-19 98.6 171 35.7
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 4.7e-19 98.6 173 34.7
VMungo0331G1422 Vigna mungo HOM05D003553 ORTHO05D005072 4.7e-19 98.6 169 34.9
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 6.1e-19 98.2 171 35.7
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 6.1e-19 98.2 205 32.7
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 6.1e-19 98.2 177 33.9
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 8.0e-19 97.8 171 34.5
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 1.8e-18 96.7 171 33.9
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 1.8e-18 96.7 171 34.5
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 1.8e-18 96.7 171 34.5
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 2.3e-18 96.3 198 33.3
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 3.0e-18 95.9 169 34.9
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 4.0e-18 95.5 171 35.7
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 5.2e-18 95.1 171 32.7
arahy.Tifrunner.gnm1.ann1.9TI54L Arachis hypogaea HOM05D003553 ORTHO05D005072 6.8e-18 94.7 169 34.9
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 6.8e-18 94.7 169 34.9
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 6.8e-18 94.7 171 34.5
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 6.8e-18 94.7 176 33.5
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 8.8e-18 94.4 171 33.9
CARHR115670 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.5e-17 93.6 52 80.8
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 3.4e-17 92.4 171 33.3
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 3.4e-17 92.4 171 33.3
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 4.4e-17 92.0 178 32.0
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 2.2e-16 89.7 173 34.7
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 2.2e-16 89.7 171 33.9
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 3.7e-16 89.0 216 30.1
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 8.3e-16 87.8 132 40.9
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 1.4e-15 87.0 165 33.3
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 7.0e-15 84.7 103 45.6
A06p09090 Brassica napus HOM05D003553 ORTHO05D005072 1.6e-14 83.6 53 73.6
BcaB05g24627 Brassica carinata HOM05D003553 ORTHO05D005072 2.9e-13 79.3 48 72.9
TAR622G0519 Trochodendron aralioides HOM05D003553 ORTHO05D005072 1.9e-12 76.6 48 70.8
Oeu048740.1 Olea europaea HOM05D003553 ORTHO05D005072 9.5e-12 74.3 142 33.1
BcaB08g35674 Brassica carinata HOM05D003553 ORTHO05D005072 1.2e-11 73.9 48 68.8
HPP92_007666 Vanilla planifolia HOM05D003553 ORTHO05D005072 4.7e-11 72.0 43 76.7
CAN.G628.39 Capsicum annuum HOM05D003553 ORTHO05D005072 1.0e-10 70.9 48 62.5
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 1.4e-10 70.5 48 66.7
CARHR035090 Cardamine hirsuta HOM05D003553 ORTHO05D040806 1.8e-10 70.1 52 65.4
MSTRG.11397 Avicennia marina HOM05D003553 ORTHO05D005072 5.2e-10 68.6 48 60.4
Medtr7g011400 Medicago truncatula HOM05D003553 ORTHO05D005072 6.8e-10 68.2 43 67.4
TAR622G0338 Trochodendron aralioides HOM05D003553 ORTHO05D005072 6.8e-10 68.2 43 67.4
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 8.8e-10 67.8 43 67.4
BcaC08g43294 Brassica carinata HOM05D003553 ORTHO05D027688 4.4e-09 65.5 34 79.4
C06p06430 Brassica napus HOM05D003553 ORTHO05D027688 4.4e-09 65.5 34 79.4
SMO270G0001 Selaginella moellendorffii HOM05D003553 ORTHO05D005072 4.4e-09 65.5 165 27.3
SEGI_02517 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 4.4e-09 65.5 171 26.3
Os09g0361500 Oryza sativa ssp. japonica HOM05D003553 ORTHO05D005072 7.5e-09 64.7 48 62.5
C03p57200 Brassica napus HOM05D009862 ORTHO05D039244 1.7e-08 63.5 43 69.8
TPR.G24814 Trifolium pratense HOM05D003553 ORTHO05D005072 2.8e-08 62.8 48 58.3
C03p57070 Brassica napus HOM05D003553 ORTHO05D039541 4.9e-08 62.0 41 68.3
BcaC01g03013 Brassica carinata HOM05D003553 ORTHO05D039244 6.3e-08 61.6 57 59.6
HPP92_007667 Vanilla planifolia HOM05D003553 ORTHO05D005072 2.4e-07 59.7 48 56.2
MD14G1195400 Malus domestica HOM05D003553 ORTHO05D005072 3.1e-07 59.3 165 28.5
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 9.2e-07 57.8 165 24.8
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 1.2e-06 57.4 169 25.4
BcaC08g46921 Brassica carinata HOM05D003553 ORTHO05D005072 2.0e-06 56.6 38 68.4


User provided reference genes

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