Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 8.3e-64 246.9 127 100.0
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 2.0e-49 199.1 110 91.8
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 9.9e-49 196.8 110 90.0
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 2.2e-48 195.7 110 90.9
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 2.2e-48 195.7 112 90.2
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 2.2e-48 195.7 110 90.9
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 4.2e-47 191.4 110 87.3
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 4.6e-46 188.0 110 84.5
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 6.0e-46 187.6 110 84.5
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 6.0e-46 187.6 110 85.5
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 1.0e-45 186.8 110 85.5
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 1.7e-45 186.0 110 84.5
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 1.1e-44 183.3 110 83.6
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 1.3e-35 153.3 108 70.4
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 1.1e-28 130.2 110 60.0
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 1.9e-28 129.4 107 58.9
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 1.9e-28 129.4 110 57.3
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 3.3e-28 128.6 110 58.2
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 5.6e-28 127.9 107 57.9
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 9.6e-28 127.1 108 62.0
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 1.6e-27 126.3 110 57.3
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 1.6e-27 126.3 110 57.3
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 2.8e-27 125.6 110 61.8
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 2.8e-27 125.6 113 54.0
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 4.8e-27 124.8 111 57.7
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 4.8e-27 124.8 110 56.4
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 6.2e-27 124.4 108 58.3
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 1.1e-26 123.6 113 55.8
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 1.1e-26 123.6 121 59.5
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 1.4e-26 123.2 108 57.4
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 1.4e-26 123.2 108 57.4
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 1.4e-26 123.2 120 60.8
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 2.4e-26 122.5 109 55.0
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 3.1e-26 122.1 110 59.1
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 3.1e-26 122.1 108 60.2
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 4.0e-26 121.7 108 55.6
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 5.3e-26 121.3 110 57.3
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 6.9e-26 120.9 110 53.6
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 9.0e-26 120.6 109 56.0
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 9.0e-26 120.6 111 51.4
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 1.2e-25 120.2 110 60.0
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 1.5e-25 119.8 108 55.6
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 2.6e-25 119.0 113 55.8
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 3.4e-25 118.6 111 54.1
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 4.5e-25 118.2 111 55.0
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 1.3e-24 116.7 111 56.8
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 2.2e-24 115.9 107 57.0
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 3.8e-24 115.2 108 55.6
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 4.9e-24 114.8 110 54.5
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 6.5e-24 114.4 107 53.3
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 8.4e-24 114.0 113 53.1
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 8.4e-24 114.0 108 52.8
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 1.1e-23 113.6 110 52.7
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 1.4e-23 113.2 110 53.6
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.4e-23 113.2 122 50.0
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 1.4e-23 113.2 114 49.1
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 2.5e-23 112.5 107 52.3
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 3.2e-23 112.1 111 50.5
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 9.3e-23 110.5 107 54.2
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 1.2e-22 110.2 110 51.8
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 2.1e-22 109.4 110 51.8
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 2.1e-22 109.4 110 53.6
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 4.6e-22 108.2 131 47.3
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 7.9e-22 107.5 107 48.6
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 1.3e-21 106.7 120 50.0
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 1.3e-21 106.7 108 52.8
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 2.3e-21 105.9 107 49.5
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 3.0e-21 105.5 110 49.1
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 3.9e-21 105.1 110 51.8
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 6.7e-21 104.4 108 50.9
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 8.7e-21 104.0 122 48.4
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.5e-20 103.2 124 46.8
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 1.6e-19 99.8 92 54.3
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 4.8e-19 98.2 107 50.5
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 4.8e-19 98.2 93 58.1
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 1.4e-18 96.7 125 44.0
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 1.4e-18 96.7 93 53.8
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 6.9e-18 94.4 96 53.1
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 3.4e-17 92.0 91 49.5
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 5.9e-17 91.3 75 58.7
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 1.7e-16 89.7 115 47.8
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 4.2e-15 85.1 107 41.1
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 5.5e-15 84.7 112 45.5
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 9.4e-15 84.0 112 42.0
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 7.9e-14 80.9 108 43.5
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 7.9e-14 80.9 98 49.0
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 7.9e-14 80.9 109 42.2
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 1.0e-13 80.5 90 47.8
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.1e-12 77.0 108 41.7
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 1.5e-12 76.6 106 41.5
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 1.4e-10 70.1 109 35.8
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 1.3e-08 63.5 106 41.5
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 1.3e-08 63.5 55 60.0
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 5.0e-08 61.6 55 60.0
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 6.5e-08 61.2 106 35.8
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 2.5e-07 59.3 53 58.5


User provided reference genes

Program Settings