Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 9.9e-225 783.1 389 100.0
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 2.1e-211 738.8 389 93.6
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 2.1e-211 738.8 389 93.6
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 2.1e-211 738.8 389 93.6
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 1.5e-209 732.6 389 93.3
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 1.5e-209 732.6 389 93.3
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 2.0e-209 732.3 388 92.5
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 4.9e-208 727.6 388 92.3
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 1.4e-207 726.1 388 91.5
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 2.1e-206 722.2 388 90.5
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 3.3e-204 714.9 388 89.9
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 4.3e-204 714.5 388 89.9
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 7.4e-204 713.8 388 89.9
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 1.1e-202 709.9 388 88.9
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 1.3e-197 693.0 388 89.4
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 3.9e-197 691.4 388 89.4
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 4.2e-183 644.8 396 79.5
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.7e-182 642.1 396 79.0
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 4.8e-179 631.3 408 76.5
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.5e-177 626.3 349 90.3
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 1.2e-156 557.0 373 71.8
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 7.0e-154 547.7 381 70.1
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 7.0e-154 547.7 378 70.4
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 7.0e-154 547.7 380 70.3
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 1.6e-153 546.6 372 72.0
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.7e-153 545.8 380 70.0
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 3.5e-153 545.4 386 69.4
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 1.3e-152 543.5 381 70.6
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 8.6e-152 540.8 378 69.6
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.6e-150 536.6 392 66.3
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 3.6e-150 535.4 374 69.5
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 2.3e-149 532.7 380 67.1
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 2.3e-149 532.7 380 68.9
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.0e-149 532.3 380 66.8
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.2e-148 530.4 389 66.1
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.2e-148 530.4 389 66.1
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 1.2e-148 530.4 383 68.4
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 1.5e-148 530.0 381 68.5
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.0e-148 529.6 380 66.8
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.4e-148 528.5 380 67.1
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 7.5e-148 527.7 380 66.8
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 7.5e-148 527.7 392 66.6
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 9.8e-148 527.3 386 67.4
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 9.8e-148 527.3 365 70.1
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 1.7e-147 526.6 372 68.5
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 1.8e-146 523.1 372 68.3
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 1.8e-146 523.1 366 69.7
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 4.1e-146 521.9 390 64.1
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 4.1e-146 521.9 374 67.6
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 5.4e-146 521.5 394 65.7
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 5.4e-146 521.5 381 68.0
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 9.2e-146 520.8 391 65.2
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 3.5e-145 518.8 406 65.0
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 4.5e-145 518.5 374 67.9
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.7e-144 516.5 389 64.5
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 2.9e-144 515.8 390 67.2
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 3.9e-144 515.4 368 67.1
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 3.9e-144 515.4 383 65.5
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 6.6e-144 514.6 379 66.0
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 8.6e-144 514.2 417 63.8
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 8.6e-144 514.2 393 65.1
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 1.1e-143 513.8 373 66.8
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 3.3e-143 512.3 372 67.7
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 3.3e-143 512.3 385 65.2
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 5.6e-143 511.5 371 66.3
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 7.3e-143 511.1 368 68.2
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 9.5e-143 510.8 397 63.2
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 1.6e-142 510.0 400 63.0
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 2.1e-142 509.6 372 65.3
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 2.1e-142 509.6 372 65.3
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 2.1e-142 509.6 395 64.3
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 2.1e-142 509.6 394 66.0
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 2.1e-142 509.6 364 67.3
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.6e-142 508.8 380 65.5
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 1.4e-141 506.9 369 65.6
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 1.8e-141 506.5 372 65.6
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 2.3e-141 506.1 367 67.3
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 6.8e-141 504.6 367 67.3
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 1.5e-140 503.4 381 64.3
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 2.6e-140 502.7 377 65.5
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 3.4e-140 502.3 384 64.3
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 5.8e-140 501.5 370 65.1
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 1.3e-139 500.4 384 64.6
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 8.3e-139 497.7 376 65.2
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 1.1e-138 497.3 372 64.0
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.9e-138 496.5 376 65.2
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 9.2e-138 494.2 258 93.8
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 4.6e-137 491.9 371 66.0
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 5.0e-136 488.4 371 63.1
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 4.3e-135 485.3 368 64.1
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 7.3e-135 484.6 368 63.0
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 1.4e-133 480.3 374 63.6
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 8.9e-133 477.6 384 63.5
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 3.4e-132 475.7 362 62.7
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 6.4e-131 471.5 441 55.1
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.9e-130 469.9 376 60.9
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 1.3e-128 463.8 369 62.1
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 3.9e-128 462.2 362 62.2
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 5.1e-128 461.8 394 58.9
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 1.5e-127 460.3 262 85.9
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.9e-127 459.9 372 61.3
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 9.5e-127 457.6 239 92.9
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 1.2e-126 457.2 238 92.9
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.1e-126 456.4 372 61.6
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 4.0e-125 452.2 367 60.2
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 2.2e-123 446.4 371 59.8
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 1.1e-122 444.1 384 59.4
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.9e-122 443.4 387 57.9
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.9e-122 443.4 387 57.9
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 7.8e-121 438.0 389 57.8
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 3.4e-116 422.5 364 57.4
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 2.9e-115 419.5 374 55.3
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.0e-112 411.0 369 55.8
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 8.1e-110 401.4 293 67.2
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 1.2e-108 397.5 300 65.0
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 1.5e-108 397.1 363 52.6
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 3.4e-108 396.0 619 38.9
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 4.4e-108 395.6 368 53.0
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 5.8e-108 395.2 280 68.2
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 2.2e-107 393.3 372 53.0
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.6e-105 387.1 374 50.5
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 2.3e-104 383.3 348 58.6
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 9.0e-101 371.3 363 49.3
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 8.4e-99 364.8 377 52.5
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.2e-97 360.9 363 53.2
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 1.3e-94 350.9 254 65.0
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 1.7e-91 340.5 248 63.7
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 1.2e-89 334.3 265 64.5
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 1.6e-89 334.0 393 45.8
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.8e-88 330.5 257 66.5
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 6.7e-88 328.6 264 63.3
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 2.8e-86 323.2 247 61.9
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 3.7e-86 322.8 234 65.0
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 7.4e-79 298.5 362 45.0
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 1.6e-73 280.8 192 65.6
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 8.2e-62 241.9 157 72.0
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.1e-61 240.0 278 51.8
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 4.5e-52 209.5 212 50.0
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 2.5e-50 203.8 204 55.9
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 7.0e-45 185.7 172 58.7
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 9.4e-42 175.3 127 62.2
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 4.0e-40 169.9 90 87.8
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 4.4e-39 166.4 114 66.7
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 6.3e-38 162.5 135 60.0
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 9.1e-37 158.7 404 32.2
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 7.2e-34 149.1 74 90.5
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.4e-32 144.8 364 31.0
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 9.2e-29 132.1 93 75.3
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.6e-28 131.3 106 58.5
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 1.0e-27 128.6 270 32.6
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 2.3e-27 127.5 93 72.0
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 2.5e-26 124.0 93 71.0
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 3.1e-24 117.1 174 40.2
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 3.5e-20 103.6 282 29.8
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 1.6e-17 94.7 49 89.8
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 8.1e-17 92.4 52 88.5
PRCOL_00001266 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.4e-16 91.7 375 26.4
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 1.2e-15 88.6 55 81.8
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 1.2e-15 88.6 85 55.3
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 1.8e-08 64.7 63 50.8


User provided reference genes

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