Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 2.8e-211 738.4 388 100.0
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 2.3e-197 692.2 393 93.1
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 5.1e-197 691.0 393 93.6
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 8.7e-197 690.3 393 93.1
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 2.8e-195 685.3 394 92.6
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 2.8e-195 685.3 394 92.6
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 1.0e-189 666.8 393 87.8
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 9.7e-188 660.2 394 88.8
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 6.3e-187 657.5 394 88.3
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 1.7e-184 649.4 391 87.7
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 1.4e-181 639.8 393 83.5
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 1.4e-178 629.8 393 84.0
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 1.6e-166 589.7 417 78.7
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.7e-160 569.7 409 76.5
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 2.1e-150 536.2 363 74.7
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 2.1e-150 536.2 289 86.2
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 1.4e-149 533.5 288 86.8
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 1.4e-149 533.5 333 79.0
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.8e-149 533.1 289 86.9
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 9.8e-148 527.3 289 85.5
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 1.7e-147 526.6 343 77.0
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 2.8e-147 525.8 333 76.9
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 4.8e-147 525.0 288 85.1
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 6.3e-147 524.6 282 86.2
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 6.3e-147 524.6 289 85.1
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 1.4e-146 523.5 287 84.7
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 3.1e-146 522.3 289 84.1
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 5.4e-146 521.5 345 78.0
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 5.4e-146 521.5 343 76.1
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 7.0e-146 521.2 289 84.8
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 7.0e-146 521.2 286 85.7
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 7.0e-146 521.2 332 76.2
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 9.1e-146 520.8 289 84.4
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 3.5e-145 518.8 287 85.4
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 4.5e-145 518.5 289 84.1
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 5.9e-145 518.1 349 74.2
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 7.7e-145 517.7 341 75.1
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 7.7e-145 517.7 349 73.1
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 1.3e-144 516.9 288 83.7
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 1.7e-144 516.5 358 71.5
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 1.7e-144 516.5 289 84.4
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 1.7e-144 516.5 343 76.1
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 2.3e-144 516.2 285 84.6
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.3e-144 516.2 290 84.8
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 2.9e-144 515.8 382 69.4
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 2.9e-144 515.8 288 83.7
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 5.0e-144 515.0 343 76.1
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 8.6e-144 514.2 372 73.7
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.1e-143 513.8 289 84.4
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 1.9e-143 513.1 286 83.6
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 3.3e-143 512.3 287 83.3
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 4.2e-143 511.9 287 82.2
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 7.2e-143 511.1 289 83.7
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 9.5e-143 510.8 289 84.1
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.2e-142 510.4 289 83.7
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.6e-142 510.0 285 82.8
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 1.6e-142 510.0 387 66.9
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.6e-142 510.0 391 65.7
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 1.6e-142 510.0 332 75.3
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 2.1e-142 509.6 288 82.6
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.8e-142 509.2 289 83.4
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.8e-142 509.2 289 83.4
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 4.7e-142 508.4 363 70.0
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 4.7e-142 508.4 286 83.9
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 8.0e-142 507.7 289 82.7
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 1.0e-141 507.3 286 83.9
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 1.4e-141 506.9 287 82.6
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 1.4e-141 506.9 288 82.3
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 1.8e-141 506.5 288 82.3
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.0e-141 505.4 289 83.0
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 4.0e-141 505.4 284 83.5
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 5.2e-141 505.0 285 83.9
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 6.8e-141 504.6 287 82.6
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 2.0e-140 503.1 385 70.1
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 2.0e-140 503.1 287 81.2
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 3.4e-140 502.3 309 78.0
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 5.7e-140 501.5 287 80.8
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 3.7e-139 498.8 337 76.3
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.7e-139 498.8 330 74.5
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 6.3e-139 498.0 416 61.8
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 1.1e-138 497.3 280 82.5
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 1.8e-138 496.5 287 79.8
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 3.1e-138 495.7 280 82.1
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 4.1e-138 495.4 360 68.3
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.1e-138 495.4 394 65.0
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 5.4e-138 495.0 333 71.5
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 1.6e-137 493.4 286 80.8
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 4.5e-137 491.9 375 68.3
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.0e-136 490.7 327 74.3
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 1.7e-136 490.0 285 79.3
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 2.9e-136 489.2 288 79.5
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 5.0e-136 488.4 287 77.7
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.1e-135 487.3 385 65.2
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 1.1e-135 487.3 285 78.9
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.3e-135 485.7 301 77.1
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.8e-134 482.6 317 73.2
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 8.0e-134 481.1 337 68.5
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 1.4e-133 480.3 368 66.6
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 4.0e-133 478.8 266 83.1
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 2.6e-132 476.1 292 76.0
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 4.1e-130 468.8 264 82.2
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 6.0e-129 464.9 308 72.7
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 1.7e-128 463.4 290 77.2
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 8.6e-128 461.1 354 65.5
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 1.9e-127 459.9 265 81.9
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 5.6e-127 458.4 374 64.7
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 2.1e-126 456.4 276 77.9
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.1e-125 454.1 289 76.8
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 3.7e-123 445.7 262 78.2
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 3.7e-123 445.7 265 78.5
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 2.4e-122 443.0 349 64.5
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 1.2e-121 440.7 349 65.0
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.6e-113 413.7 279 67.7
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 3.0e-112 409.5 286 66.8
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 1.1e-111 407.5 279 67.0
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 1.2e-110 404.1 219 86.3
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 3.4e-108 396.0 306 65.0
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 2.2e-107 393.3 286 64.3
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 9.2e-106 387.9 225 82.2
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 9.2e-106 387.9 275 64.4
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.0e-92 343.6 183 83.6
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 2.2e-91 340.1 289 62.6
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 6.7e-88 328.6 289 59.2
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 2.0e-84 317.0 383 48.3
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 8.7e-80 301.6 155 91.6
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 2.8e-70 270.0 146 82.2
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 3.0e-64 250.0 147 81.6
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 1.2e-44 184.9 173 59.0
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 2.2e-43 180.6 216 47.7
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 1.5e-39 167.9 106 78.3
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 5.7e-39 166.0 120 70.8
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.6e-36 157.9 94 70.2
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 1.0e-32 145.2 161 50.9
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 4.5e-28 129.8 66 84.8
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 5.9e-28 129.4 72 81.9
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 7.7e-28 129.0 84 73.8
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.5e-26 124.8 66 81.8
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 3.0e-24 117.1 72 80.6
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 6.8e-24 115.9 128 53.1
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.8e-21 107.8 66 75.8
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 5.4e-21 106.3 71 73.2
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 8.9e-16 89.0 66 68.2
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 1.4e-13 81.6 66 56.1
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 1.7e-06 58.2 46 54.3


User provided reference genes

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