Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02614 Brassica carinata HOM05D003009 ORTHO05D001701 2.7e-55 218.4 107 100.0
BcaB07g32438 Brassica carinata HOM05D003009 ORTHO05D001701 1.5e-53 212.6 106 98.1
BcaC05g26833 Brassica carinata HOM05D003009 ORTHO05D001701 2.1e-52 208.8 106 96.2
BolC5t31428H Brassica oleracea HOM05D003009 ORTHO05D001701 2.1e-52 208.8 106 96.2
BraA09t39290Z Brassica rapa HOM05D003009 ORTHO05D001701 2.1e-52 208.8 106 96.2
A09p37790 Brassica napus HOM05D003009 ORTHO05D001701 4.7e-52 207.6 106 95.3
C05p27140 Brassica napus HOM05D003009 ORTHO05D001701 2.3e-51 205.3 106 94.3
A07p11350 Brassica napus HOM05D003009 ORTHO05D001701 6.6e-46 187.2 106 84.0
BraA07t28924Z Brassica rapa HOM05D003009 ORTHO05D001701 1.5e-45 186.0 106 84.0
BcaC06g35349 Brassica carinata HOM05D003009 ORTHO05D001701 2.5e-45 185.3 106 83.0
BolC7t42219H Brassica oleracea HOM05D003009 ORTHO05D001701 2.5e-45 185.3 106 83.0
BcaB03g13938 Brassica carinata HOM05D003009 ORTHO05D001701 3.3e-45 184.9 106 84.0
Sp1g24490 Schrenkiella parvula HOM05D003009 ORTHO05D001701 4.3e-45 184.5 114 83.3
C07p17130 Brassica napus HOM05D003009 ORTHO05D001701 5.6e-45 184.1 106 83.0
CARHR027780 Cardamine hirsuta HOM05D003009 ORTHO05D001701 5.6e-45 184.1 106 81.1
Thhalv10008255m.g Eutrema salsugineum HOM05D003009 ORTHO05D001701 5.6e-45 184.1 106 84.9
Carub.0001s2673 Capsella rubella HOM05D003009 ORTHO05D001701 3.6e-44 181.4 103 82.5
AT1G28290 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 1.1e-43 179.9 106 78.3
AL1G41840 Arabidopsis lyrata HOM05D003009 ORTHO05D001701 5.2e-43 177.6 106 77.4
Aa31sc225G30 Aethionema arabicum HOM05D003009 ORTHO05D001701 4.6e-39 164.5 103 76.7
Carub.0004s1545 Capsella rubella HOM05D003009 ORTHO05D001701 1.5e-34 149.4 106 65.1
CARHR127890 Cardamine hirsuta HOM05D003009 ORTHO05D001701 9.9e-34 146.7 106 64.2
Sp4g16170 Schrenkiella parvula HOM05D003009 ORTHO05D001701 1.3e-33 146.4 106 65.1
BcaC02g07775 Brassica carinata HOM05D003009 ORTHO05D001701 4.2e-32 141.4 106 62.3
C04p63290 Brassica napus HOM05D003009 ORTHO05D001701 4.2e-32 141.4 106 62.3
BolC4t27803H Brassica oleracea HOM05D003009 ORTHO05D001701 4.2e-32 141.4 106 62.3
A04p25990 Brassica napus HOM05D003009 ORTHO05D001701 2.7e-31 138.7 106 61.3
BraA04t18102Z Brassica rapa HOM05D003009 ORTHO05D001701 2.7e-31 138.7 106 61.3
Aa31sc225G10 Aethionema arabicum HOM05D003009 ORTHO05D001701 1.0e-30 136.7 105 62.9
AT2G33790 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 1.0e-30 136.7 106 59.4
THA.LOC104814217 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 8.7e-30 133.7 106 61.3
AL4G29510 Arabidopsis lyrata HOM05D003009 ORTHO05D001701 1.1e-29 133.3 106 59.4
THA.LOC104820687 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 1.5e-29 132.9 106 60.4
BcaC02g07773 Brassica carinata HOM05D003009 ORTHO05D001701 1.8e-19 99.4 82 62.2
C04p63300 Brassica napus HOM05D003009 ORTHO05D001701 1.8e-19 99.4 80 63.8
BolC4t27804H Brassica oleracea HOM05D003009 ORTHO05D001701 1.8e-19 99.4 80 63.8
Eucgr.D00613 Eucalyptus grandis HOM05D003009 ORTHO05D001701 1.2e-18 96.7 102 51.0
Sabra11G0037400 Salix brachista HOM05D003009 ORTHO05D001701 2.0e-18 95.9 107 44.9
Atru.chr10.1864 Acer truncatum HOM05D003009 ORTHO05D001701 7.6e-18 94.0 104 45.2
Sabra04G0027800 Salix brachista HOM05D003009 ORTHO05D001701 7.6e-18 94.0 107 45.8
CsaV3_1G012370 Cucumis sativus L. HOM05D003009 ORTHO05D001701 9.9e-18 93.6 108 50.9
Gohir.A06G128400 Gossypium hirsutum HOM05D003009 ORTHO05D001701 9.9e-18 93.6 104 49.0
Gohir.D06G132500 Gossypium hirsutum HOM05D003009 ORTHO05D001701 9.9e-18 93.6 104 49.0
Gorai.010G154300 Gossypium raimondii HOM05D003009 ORTHO05D001701 9.9e-18 93.6 104 49.0
ClCG03G008180 Citrullus lanatus HOM05D003009 ORTHO05D001701 1.3e-17 93.2 106 49.1
Duzib192G0967 Durio zibethinus HOM05D003009 ORTHO05D001701 1.3e-17 93.2 104 47.1
Cfa000485 Carpinus fangiana HOM05D003009 ORTHO05D001701 2.2e-17 92.4 107 45.8
Potri.011G053600 Populus trichocarpa HOM05D003009 ORTHO05D001701 2.2e-17 92.4 107 43.9
CSS0013482 Camellia sinensis var. sinensis HOM05D003009 ORTHO05D001701 2.9e-17 92.0 102 46.1
MELO3C002610.2 Cucumis melo HOM05D003009 ORTHO05D001701 2.9e-17 92.0 106 48.1
MELO3C007279.2 Cucumis melo HOM05D003009 ORTHO05D001701 2.9e-17 92.0 104 44.2
Sed0006317 Sechium edule HOM05D003009 ORTHO05D001701 4.9e-17 91.3 104 44.2
Gohir.A05G161100 Gossypium hirsutum HOM05D003009 ORTHO05D001701 6.4e-17 90.9 106 46.2
MD05G1338000 Malus domestica HOM05D003009 ORTHO05D001701 6.4e-17 90.9 107 43.0
Potri.004G044700 Populus trichocarpa HOM05D003009 ORTHO05D001701 6.4e-17 90.9 107 43.9
Prupe.4G048800 Prunus persica HOM05D003009 ORTHO05D001701 6.4e-17 90.9 104 43.3
THA.LOC104812275 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 6.4e-17 90.9 104 43.3
Thecc.06G185700 Theobroma cacao HOM05D003009 ORTHO05D001701 6.4e-17 90.9 104 46.2
Cpa.g.sc27.37 Carica papaya HOM05D003009 ORTHO05D001701 8.4e-17 90.5 107 44.9
Thhalv10017961m.g Eutrema salsugineum HOM05D003009 ORTHO05D001701 8.4e-17 90.5 108 44.4
Duzib160G0415 Durio zibethinus HOM05D003009 ORTHO05D001701 1.1e-16 90.1 104 45.2
ClCG01G023040 Citrullus lanatus HOM05D003009 ORTHO05D001701 1.4e-16 89.7 104 42.3
CsaV3_6G050170 Cucumis sativus L. HOM05D003009 ORTHO05D001701 1.4e-16 89.7 104 43.3
CiPaw.09G060900 Carya illinoinensis HOM05D003009 ORTHO05D001701 1.9e-16 89.4 104 45.2
COL.COLO4_31456 Corchorus olitorius HOM05D003009 ORTHO05D001701 2.4e-16 89.0 103 47.6
QL05p041024 Quercus lobata HOM05D003009 ORTHO05D001701 2.4e-16 89.0 101 46.5
Gohir.D05G163801 Gossypium hirsutum HOM05D003009 ORTHO05D001701 3.2e-16 88.6 103 46.6
Gorai.009G168900 Gossypium raimondii HOM05D003009 ORTHO05D001701 3.2e-16 88.6 103 46.6
Duzib235G1045 Durio zibethinus HOM05D003009 ORTHO05D001701 4.2e-16 88.2 104 43.3
MD10G1293100 Malus domestica HOM05D003009 ORTHO05D001701 4.2e-16 88.2 107 43.9
PGR004G0870 Punica granatum HOM05D003009 ORTHO05D001701 4.2e-16 88.2 105 46.7
Cfa002262 Carpinus fangiana HOM05D003009 ORTHO05D001701 7.1e-16 87.4 104 44.2
Sed0027600 Sechium edule HOM05D003009 ORTHO05D001701 7.1e-16 87.4 105 49.5
Manes.16G028850 Manihot esculenta HOM05D003009 ORTHO05D001701 9.3e-16 87.0 104 44.2
Hma1.2p1_0736F.1_g210750 Hydrangea macrophylla HOM05D003009 ORTHO05D001701 1.2e-15 86.7 102 44.1
QL05p041061 Quercus lobata HOM05D003009 ORTHO05D001701 1.2e-15 86.7 101 44.6
vmacro03876 Vaccinium macrocarpon HOM05D003009 ORTHO05D001701 2.1e-15 85.9 110 42.7
Actinidia05644 Actinidia chinensis HOM05D003009 ORTHO05D001701 2.7e-15 85.5 102 42.2
FAN21G3284 Fragaria x ananassa HOM05D003009 ORTHO05D001701 2.7e-15 85.5 107 40.2
Manes.17G046500 Manihot esculenta HOM05D003009 ORTHO05D001701 2.7e-15 85.5 104 42.3
DCAR_004069 Daucus carota HOM05D003009 ORTHO05D001701 3.5e-15 85.1 106 43.4
Lj2A289T21 Lonicera japonica HOM05D003009 ORTHO05D001701 4.6e-15 84.7 102 45.1
Aa31LG6G5170 Aethionema arabicum HOM05D003009 ORTHO05D001701 6.0e-15 84.3 104 44.2
AT2G34700 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 6.0e-15 84.3 106 42.5
Sp4g16980 Schrenkiella parvula HOM05D003009 ORTHO05D001701 6.0e-15 84.3 108 42.6
BcaC02g11549 Brassica carinata HOM05D003009 ORTHO05D001701 7.9e-15 84.0 108 40.7
BcaB02g09517 Brassica carinata HOM05D003009 ORTHO05D001701 1.0e-14 83.6 108 40.7
BcaB02g09518 Brassica carinata HOM05D003009 ORTHO05D001701 1.0e-14 83.6 108 40.7
FAN25G2997 Fragaria x ananassa HOM05D003009 ORTHO05D001701 1.3e-14 83.2 107 39.3
C04p14040 Brassica napus HOM05D003009 ORTHO05D001701 1.8e-14 82.8 108 39.8
BolC4t22995H Brassica oleracea HOM05D003009 ORTHO05D001701 1.8e-14 82.8 108 39.8
FvH4_3g09040 Fragaria vesca HOM05D003009 ORTHO05D001701 1.8e-14 82.8 107 39.3
FAN11G0879 Fragaria x ananassa HOM05D003009 ORTHO05D001701 1.8e-14 82.8 107 39.3
A05p10940 Brassica napus HOM05D003009 ORTHO05D001701 2.3e-14 82.4 106 41.5
BraA05t20040Z Brassica rapa HOM05D003009 ORTHO05D001701 2.3e-14 82.4 106 41.5
Carub.0004s1639 Capsella rubella HOM05D003009 ORTHO05D001701 2.3e-14 82.4 111 38.7
Dinv40571 Davidia involucrata HOM05D003009 ORTHO05D001701 3.0e-14 82.0 102 44.1
FAN16G3267 Fragaria x ananassa HOM05D003009 ORTHO05D001701 8.7e-14 80.5 107 37.4
DCAR_008035 Daucus carota HOM05D003009 ORTHO05D001701 1.1e-13 80.1 98 45.9
Medtr5g047890 Medicago truncatula HOM05D003009 ORTHO05D001701 1.1e-13 80.1 104 43.3
Ca_18551_v3 Cicer arietinum L. HOM05D003009 ORTHO05D001701 1.5e-13 79.7 107 42.1
Rhsim13G0179100 Rhododendron simsii HOM05D003009 ORTHO05D001701 1.5e-13 79.7 114 38.6
Dinv17322 Davidia involucrata HOM05D003009 ORTHO05D001701 2.5e-13 79.0 101 42.6
Lj1A1203T34 Lonicera japonica HOM05D003009 ORTHO05D001701 2.5e-13 79.0 104 44.2
TWI38G2351 Tripterygium wilfordii HOM05D003009 ORTHO05D001701 3.3e-13 78.6 106 44.3
PSO210G4623 Papaver somniferum HOM05D003009 ORTHO05D001701 4.3e-13 78.2 100 46.0
Psat7g114200 Pisum sativum HOM05D003009 ORTHO05D001701 5.6e-13 77.8 104 43.3
VMungo0251G3565 Vigna mungo HOM05D003009 ORTHO05D001701 5.6e-13 77.8 104 43.3
Glyma.13G178700 Glycine max HOM05D003009 ORTHO05D001701 7.4e-13 77.4 104 43.3
Medtr1g055415 Medicago truncatula HOM05D003009 ORTHO05D001701 7.4e-13 77.4 101 43.6
Aa31LG9G13710 Aethionema arabicum HOM05D003009 ORTHO05D001701 9.6e-13 77.0 102 43.1
CAN.G529.5 Capsicum annuum HOM05D003009 ORTHO05D001701 9.6e-13 77.0 99 42.4
ECA236G1979 Erigeron canadensis HOM05D003009 ORTHO05D001701 9.6e-13 77.0 99 39.4
RcHm_v2.0_Chr5g0008631 Rosa chinensis HOM05D003009 ORTHO05D001701 9.6e-13 77.0 104 37.5
HanXRQChr16g0516201 Helianthus annuus HOM05D003009 ORTHO05D001701 1.3e-12 76.6 98 41.8
AL4G30690 Arabidopsis lyrata HOM05D003009 ORTHO05D001701 1.6e-12 76.3 90 43.3
Lalb_Chr20g0121811 Lupinus albus HOM05D003009 ORTHO05D001701 2.1e-12 75.9 105 41.0
Cc02_g13480 Coffea canephora HOM05D003009 ORTHO05D001701 3.7e-12 75.1 100 43.0
Oeu033907.1 Olea europaea HOM05D003009 ORTHO05D001701 3.7e-12 75.1 99 41.4
PSO832G2944 Papaver somniferum HOM05D003009 ORTHO05D001701 3.7e-12 75.1 100 44.0
GSVIVG01007286001 Vitis vinifera HOM05D003009 ORTHO05D001701 3.7e-12 75.1 102 40.2
CARHR128860 Cardamine hirsuta HOM05D003009 ORTHO05D001701 4.8e-12 74.7 117 35.9
Lsat_1_v5_gn_4_53840 Lactuca sativa HOM05D003009 ORTHO05D001701 4.8e-12 74.7 99 41.4
Lj6g0021953 Lotus japonicus HOM05D003009 ORTHO05D001701 4.8e-12 74.7 104 39.4
unitig_22.g6231 Utricularia gibba HOM05D003009 ORTHO05D001701 4.8e-12 74.7 99 42.4
CANSAT35G1820 Cannabis sativa HOM05D003009 ORTHO05D001701 6.2e-12 74.3 102 43.1
PGR042G0148 Punica granatum HOM05D003009 ORTHO05D001701 6.2e-12 74.3 99 37.4
Phvul.002G229200 Phaseolus vulgaris HOM05D003009 ORTHO05D001701 1.1e-11 73.6 104 42.3
Ah.14g089490 Amaranthus hybridus HOM05D003009 ORTHO05D001701 1.4e-11 73.2 101 45.5
Medtr4g088735 Medicago truncatula HOM05D003009 ORTHO05D001701 1.4e-11 73.2 108 39.8
TAR627G0353 Trochodendron aralioides HOM05D003009 ORTHO05D001701 1.4e-11 73.2 100 39.0
Nitab4.5_0001652g0150 Nicotiana tabacum HOM05D003009 ORTHO05D001701 2.4e-11 72.4 105 37.1
Aa31sc225G20 Aethionema arabicum HOM05D003009 ORTHO05D001701 3.1e-11 72.0 83 48.2
Lalb_Chr16g0383811 Lupinus albus HOM05D003009 ORTHO05D001701 4.0e-11 71.6 110 40.0
Medtr3g012020 Medicago truncatula HOM05D003009 ORTHO05D001701 4.0e-11 71.6 102 44.1
Medtr4g088740 Medicago truncatula HOM05D003009 ORTHO05D001701 4.0e-11 71.6 105 40.0
TPR.G33106 Trifolium pratense HOM05D003009 ORTHO05D001701 6.9e-11 70.9 104 45.2
Lalb_Chr16g0383841 Lupinus albus HOM05D003009 ORTHO05D001701 9.0e-11 70.5 108 39.8
HanXRQChr04g0124251 Helianthus annuus HOM05D003009 ORTHO05D001701 1.2e-10 70.1 98 38.8
TPR.G7042 Trifolium pratense HOM05D003009 ORTHO05D001701 1.2e-10 70.1 107 43.0
ATR0737G038 Amborella trichopoda HOM05D003009 ORTHO05D001701 1.5e-10 69.7 100 40.0
Nitab4.5_0009438g0020 Nicotiana tabacum HOM05D003009 ORTHO05D001701 1.5e-10 69.7 106 35.8
Peaxi162Scf00250g00029 Petunia axillaris HOM05D003009 ORTHO05D001701 1.5e-10 69.7 105 37.1
TPR.G40408 Trifolium pratense HOM05D003009 ORTHO05D001701 1.5e-10 69.7 99 42.4
EL10Ac8g20392 Beta vulgaris HOM05D003009 ORTHO05D001701 2.0e-10 69.3 101 40.6
Lsat_1_v5_gn_7_21560 Lactuca sativa HOM05D003009 ORTHO05D001701 2.0e-10 69.3 98 38.8
MBI07_g30189_MAGBIO Magnolia biondii HOM05D002105 ORTHO05D001271 2.0e-10 69.3 98 43.9
Rhsim02G0131200 Rhododendron simsii HOM05D003009 ORTHO05D001701 2.0e-10 69.3 102 38.2
Rhsim02G0131700 Rhododendron simsii HOM05D003009 ORTHO05D001701 2.0e-10 69.3 101 37.6
Prupe.7G084000 Prunus persica HOM05D003009 ORTHO05D001701 2.6e-10 68.9 101 39.6
Hund21219 Selenicereus undatus HOM05D003009 ORTHO05D001701 2.6e-10 68.9 103 36.9
Sc05g0007600 Simmondsia chinensis HOM05D003009 ORTHO05D001701 2.6e-10 68.9 100 38.0
Sc24g0001000 Simmondsia chinensis HOM05D003009 ORTHO05D001701 2.6e-10 68.9 100 38.0
Haze_06431 Corylus avellana HOM05D003009 ORTHO05D001701 5.8e-10 67.8 97 39.2
MSTRG.7337 Avicennia marina HOM05D003009 ORTHO05D001701 7.6e-10 67.4 98 38.8
Aqoxy1G02393 Aquilegia oxysepala HOM05D003009 ORTHO05D001701 1.0e-09 67.0 109 39.4
Oeu064785.1 Olea europaea HOM05D003009 ORTHO05D001701 1.0e-09 67.0 102 35.3
AUR62017024 Chenopodium quinoa HOM05D003009 ORTHO05D001701 2.2e-09 65.9 101 38.6
Medtr4g046767 Medicago truncatula HOM05D003009 ORTHO05D001701 6.5e-09 64.3 107 39.3
Medtr4g046780 Medicago truncatula HOM05D003009 ORTHO05D001701 1.1e-08 63.5 103 39.8
Nitab4.5_0012561g0010 Nicotiana tabacum HOM05D003009 ORTHO05D001701 1.1e-08 63.5 105 37.1
Solyc02g078100.3 Solanum lycopersicum HOM05D003009 ORTHO05D001701 1.4e-08 63.2 107 36.4
Sopen02g022930 Solanum pennellii HOM05D003009 ORTHO05D001701 1.4e-08 63.2 107 36.4
vmacro15914 Vaccinium macrocarpon HOM05D003009 ORTHO05D001701 1.4e-08 63.2 101 34.7
Medtr4g017240 Medicago truncatula HOM05D003009 ORTHO05D001701 3.2e-08 62.0 103 36.9
Medtr4g066680 Medicago truncatula HOM05D003009 ORTHO05D001701 3.2e-08 62.0 106 37.7
ECA234G4352 Erigeron canadensis HOM05D003009 ORTHO05D001701 4.2e-08 61.6 93 39.8
PGSC0003DMG400029695 Solanum tuberosum HOM05D003009 ORTHO05D001701 7.1e-08 60.8 100 36.0
Lalb_Chr18g0059561 Lupinus albus HOM05D003009 ORTHO05D001701 9.3e-08 60.5 103 33.0
Solyc02g078060.1 Solanum lycopersicum HOM05D003009 ORTHO05D001701 1.6e-07 59.7 105 35.2
Lalb_Chr16g0383821 Lupinus albus HOM05D003009 ORTHO05D001701 2.1e-07 59.3 102 36.3
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 2.1e-07 59.3 73 45.2
Nitab4.5_0001652g0160 Nicotiana tabacum HOM05D003009 ORTHO05D001701 4.6e-07 58.2 102 33.3
Peaxi162Scf00250g00037 Petunia axillaris HOM05D003009 ORTHO05D001701 6.0e-07 57.8 100 36.0
Medtr8g092230 Medicago truncatula HOM05D003009 ORTHO05D001701 1.3e-06 56.6 103 35.0
Lalb_Chr18g0059571 Lupinus albus HOM05D003009 ORTHO05D001701 1.8e-06 56.2 85 36.5
Sopen02g022900 Solanum pennellii HOM05D003009 ORTHO05D001701 1.8e-06 56.2 101 34.7
PGSC0003DMG400029698 Solanum tuberosum HOM05D003009 ORTHO05D001701 2.3e-06 55.8 104 36.5
Eucgr.E03269 Eucalyptus grandis HOM05D003009 ORTHO05D001701 3.0e-06 55.5 63 46.0
CAN.G529.8 Capsicum annuum HOM05D003009 ORTHO05D001701 5.1e-06 54.7 108 31.5
TPR.G23035 Trifolium pratense HOM05D003009 ORTHO05D001701 5.1e-06 54.7 73 46.6


User provided reference genes

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