Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02581 Brassica carinata HOM05D010217 ORTHO05D014062 1.8e-70 269.2 147 100.0
C03p36360 Brassica napus HOM05D010217 ORTHO05D014062 8.4e-68 260.4 147 95.2
BolC3t15950H Brassica oleracea HOM05D010217 ORTHO05D014062 8.4e-68 260.4 147 95.2
BraA03t12198Z Brassica rapa HOM05D010217 ORTHO05D014062 6.0e-66 254.2 147 91.8
A03p30150 Brassica napus HOM05D010217 ORTHO05D014062 6.7e-65 250.8 147 91.8
Sp6g04300 Schrenkiella parvula HOM05D010217 ORTHO05D014062 2.7e-50 202.2 150 79.3
Carub.0001s0277 Capsella rubella HOM05D010217 ORTHO05D014062 1.1e-30 137.1 153 56.9
BcaC01g00010 Brassica carinata HOM05D010217 ORTHO05D014062 1.1e-27 127.1 138 51.4
C03p74780 Brassica napus HOM05D010217 ORTHO05D014062 1.1e-27 127.1 138 51.4
BolC3t19727H Brassica oleracea HOM05D010217 ORTHO05D014062 1.1e-27 127.1 138 53.6
BcaB03g12131 Brassica carinata HOM05D010217 ORTHO05D014062 1.5e-27 126.7 137 52.6
BcaB03g12132 Brassica carinata HOM05D010217 ORTHO05D014062 1.5e-27 126.7 137 52.6
BcaC07g42240 Brassica carinata HOM05D010217 ORTHO05D027043 2.1e-26 122.9 153 51.0
BolC8t52797H Brassica oleracea HOM05D010217 ORTHO05D027043 2.1e-26 122.9 153 51.0
BcaC07g42235 Brassica carinata HOM05D010217 ORTHO05D027043 8.0e-26 120.9 153 51.6
C08p52710 Brassica napus HOM05D010217 ORTHO05D027043 2.0e-24 116.3 154 50.0
BraA08t34539Z Brassica rapa HOM05D010217 ORTHO05D014062 1.7e-20 103.2 135 48.9
AT1G03660 Arabidopsis thaliana HOM05D010217 ORTHO05D014062 1.1e-19 100.5 98 58.2
A08p25840 Brassica napus HOM05D010217 ORTHO05D014062 1.2e-18 97.1 123 51.2
A09p68260 Brassica napus HOM05D000803 ORTHO05D001162 1.0e-17 94.0 136 47.8
Sp6g04290 Schrenkiella parvula HOM05D000264 ORTHO05D000152 2.0e-16 89.7 125 48.0
Thhalv10002443m.g Eutrema salsugineum HOM05D000264 ORTHO05D000152 1.2e-13 80.5 130 44.6
A09p68270 Brassica napus HOM05D010217 ORTHO05D028134 2.9e-12 75.9 105 44.8
BraA09t42162Z Brassica rapa HOM05D010217 ORTHO05D028134 2.1e-10 69.7 105 41.9
Lalb_Chr01g0005281 Lupinus albus HOM05D000264 ORTHO05D000152 4.7e-10 68.6 149 36.2
A02p13600 Brassica napus HOM05D000264 ORTHO05D000152 8.0e-10 67.8 123 42.3
C02p21940 Brassica napus HOM05D000264 ORTHO05D000152 8.0e-10 67.8 123 42.3
BraA02t06419Z Brassica rapa HOM05D000264 ORTHO05D000152 8.0e-10 67.8 123 42.3
BolC8t52798H Brassica oleracea HOM05D010217 ORTHO05D028134 1.0e-09 67.4 105 40.0
BraA09t42161Z Brassica rapa HOM05D000803 ORTHO05D001162 2.3e-09 66.2 94 46.8
BcaC03g14743 Brassica carinata HOM05D000264 ORTHO05D000152 3.1e-09 65.9 118 41.5
C08p52720 Brassica napus HOM05D010217 ORTHO05D028134 5.2e-09 65.1 105 40.0
AT1G03670 Arabidopsis thaliana HOM05D000264 ORTHO05D000152 2.6e-08 62.8 148 37.2
BcaC01g06675 Brassica carinata HOM05D000264 ORTHO05D000152 2.6e-08 62.8 119 38.7
C03p36730 Brassica napus HOM05D000264 ORTHO05D000152 2.6e-08 62.8 119 38.7
BolC3t15987H Brassica oleracea HOM05D000264 ORTHO05D000152 2.6e-08 62.8 119 38.7
CARHR002990 Cardamine hirsuta HOM05D000264 ORTHO05D000152 4.4e-08 62.0 150 38.0
BraA03t12224Z Brassica rapa HOM05D000264 ORTHO05D000152 5.8e-08 61.6 119 37.8
Dinv02172 Davidia involucrata HOM05D000264 ORTHO05D000152 7.5e-08 61.2 137 33.6
AT4G03500 Arabidopsis thaliana HOM05D000264 ORTHO05D000152 1.7e-07 60.1 119 35.3
BcaB01g02537 Brassica carinata HOM05D000264 ORTHO05D000152 2.2e-07 59.7 119 37.0
GSVIVG01030372001 Vitis vinifera HOM05D000264 ORTHO05D000152 2.2e-07 59.7 119 33.6
Carub.0006s3361 Capsella rubella HOM05D000264 ORTHO05D000152 4.9e-07 58.5 119 35.3
GSVIVG01030367001 Vitis vinifera HOM05D000264 ORTHO05D000152 6.4e-07 58.2 126 33.3
Dinv02176 Davidia involucrata HOM05D000264 ORTHO05D000152 8.3e-07 57.8 141 37.6
Hund18035 Selenicereus undatus HOM05D000264 ORTHO05D000152 8.3e-07 57.8 132 30.3
Actinidia11042 Actinidia chinensis HOM05D000264 ORTHO05D000152 1.1e-06 57.4 153 34.6
Migut.D00741 Erythranthe guttata HOM05D000264 ORTHO05D000152 1.1e-06 57.4 143 33.6
CARHR251900 Cardamine hirsuta HOM05D000264 ORTHO05D000001 1.4e-06 57.0 149 31.5
Prupe.3G153800 Prunus persica HOM05D000264 ORTHO05D000152 1.4e-06 57.0 108 35.2
Actinidia11041 Actinidia chinensis HOM05D000264 ORTHO05D000152 1.9e-06 56.6 153 34.0
arahy.Tifrunner.gnm1.ann1.87J5U8 Arachis hypogaea HOM05D000264 ORTHO05D000152 1.9e-06 56.6 130 36.2
Dinv01341 Davidia involucrata HOM05D000264 ORTHO05D000152 1.9e-06 56.6 141 36.9
TAR624G1302 Trochodendron aralioides HOM05D000264 ORTHO05D000152 1.9e-06 56.6 128 33.6
Dinv26423 Davidia involucrata HOM05D000264 ORTHO05D000152 2.4e-06 56.2 128 31.2
AT4G03460 Arabidopsis thaliana HOM05D000264 ORTHO05D000152 3.2e-06 55.8 151 33.8
GSVIVG01020519001 Vitis vinifera HOM05D000264 ORTHO05D000152 3.2e-06 55.8 148 33.1
Dinv23656 Davidia involucrata HOM05D000264 ORTHO05D000152 5.4e-06 55.1 115 33.9
vmacro12289 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 5.4e-06 55.1 136 30.1
vmacro22811 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 5.4e-06 55.1 136 30.1
Eucgr.K00980 Eucalyptus grandis HOM05D000264 ORTHO05D000152 7.0e-06 54.7 105 36.2
QL02p056100 Quercus lobata HOM05D000264 ORTHO05D000152 7.0e-06 54.7 126 34.9
QL05p018838 Quercus lobata HOM05D000264 ORTHO05D000152 7.0e-06 54.7 126 34.9
Rhsim06G0144100 Rhododendron simsii HOM05D000264 ORTHO05D000152 7.0e-06 54.7 147 29.9
Rhsim06G0145300 Rhododendron simsii HOM05D000264 ORTHO05D000152 7.0e-06 54.7 142 32.4
GSVIVG01020530001 Vitis vinifera HOM05D000264 ORTHO05D000152 7.0e-06 54.7 112 33.9


User provided reference genes

Program Settings