Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 2.3e-113 412.1 199 100.0
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 2.1e-106 389.0 199 92.0
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 6.2e-106 387.5 199 92.0
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 8.1e-106 387.1 199 91.5
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 1.2e-104 383.3 199 91.0
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 2.0e-104 382.5 199 90.5
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 3.2e-102 375.2 199 87.4
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 3.2e-102 375.2 199 87.4
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 1.7e-100 369.4 199 85.4
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 1.7e-100 369.4 199 86.4
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 3.9e-100 368.2 199 85.4
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 8.7e-100 367.1 199 84.4
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 5.6e-99 364.4 199 84.9
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 1.4e-97 359.8 200 84.0
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 2.4e-97 359.0 200 84.0
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 1.1e-91 340.1 200 79.0
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 9.9e-88 327.0 199 78.4
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 3.0e-84 315.5 160 88.1
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 4.5e-80 301.6 193 74.1
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 2.1e-77 292.7 166 81.3
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 6.7e-76 287.7 183 71.6
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 5.7e-75 284.6 183 70.5
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 2.8e-74 282.3 185 70.3
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 1.4e-73 280.0 187 69.5
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 4.1e-73 278.5 186 69.9
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 5.3e-73 278.1 191 71.2
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 9.0e-73 277.3 183 69.4
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 2.6e-72 275.8 187 67.9
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 2.6e-72 275.8 186 69.9
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 3.4e-72 275.4 191 66.5
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 5.9e-72 274.6 185 69.2
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 7.6e-72 274.2 174 72.4
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 7.6e-72 274.2 188 68.1
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.3e-71 273.5 189 66.7
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 1.7e-71 273.1 169 72.8
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 1.7e-71 273.1 175 70.9
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 1.7e-71 273.1 180 68.9
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 2.2e-71 272.7 207 63.8
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 2.2e-71 272.7 183 68.3
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 2.2e-71 272.7 182 70.9
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 2.9e-71 272.3 186 68.3
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 6.5e-71 271.2 193 64.2
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 6.5e-71 271.2 183 68.3
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 6.5e-71 271.2 183 68.3
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 8.5e-71 270.8 166 71.1
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 1.4e-70 270.0 187 66.8
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 2.5e-70 269.2 185 68.1
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 2.5e-70 269.2 194 63.9
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 2.5e-70 269.2 189 66.7
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 3.2e-70 268.9 180 67.2
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 3.2e-70 268.9 197 65.0
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 3.2e-70 268.9 188 67.6
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 9.3e-70 267.3 190 67.4
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 1.2e-69 266.9 182 68.7
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 1.6e-69 266.5 192 68.2
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 1.6e-69 266.5 185 69.7
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 2.1e-69 266.2 182 67.6
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 2.1e-69 266.2 182 67.6
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 2.1e-69 266.2 185 65.4
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 2.1e-69 266.2 161 75.2
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 2.7e-69 265.8 180 67.2
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 3.6e-69 265.4 185 69.2
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 6.1e-69 264.6 181 65.7
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 7.9e-69 264.2 160 72.5
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 1.0e-68 263.8 166 71.1
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.0e-68 263.8 188 65.4
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 1.3e-68 263.5 179 65.9
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 1.3e-68 263.5 161 73.3
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 2.3e-68 262.7 165 72.1
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 2.3e-68 262.7 193 64.2
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 3.0e-68 262.3 189 65.1
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 3.0e-68 262.3 190 66.8
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 6.7e-68 261.2 162 72.8
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 6.7e-68 261.2 180 65.6
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 6.7e-68 261.2 184 66.8
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 8.7e-68 260.8 183 63.9
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.1e-67 260.4 165 71.5
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.1e-67 260.4 191 63.9
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 1.5e-67 260.0 161 72.0
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 5.7e-67 258.1 191 61.8
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 7.4e-67 257.7 188 64.9
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 9.7e-67 257.3 186 63.4
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 9.7e-67 257.3 163 70.6
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 6.3e-66 254.6 184 64.7
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 8.2e-66 254.2 184 65.2
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 1.1e-65 253.8 193 62.7
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 1.4e-65 253.4 183 66.7
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 6.9e-65 251.1 182 65.4
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 2.0e-64 249.6 186 64.5
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 4.5e-64 248.4 186 61.3
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 2.2e-63 246.1 175 62.9
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 2.2e-63 246.1 164 69.5
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 2.7e-61 239.2 216 53.7
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 6.7e-60 234.6 163 65.0
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 2.6e-59 232.6 158 68.4
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 4.4e-59 231.9 161 64.6
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 1.3e-58 230.3 235 51.5
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 1.7e-58 229.9 165 63.0
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 3.1e-57 225.7 140 72.9
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 4.1e-57 225.3 200 54.0
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 1.2e-56 223.8 262 47.3
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 3.4e-56 222.2 148 70.3
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 4.5e-56 221.9 188 56.4
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 8.5e-55 217.6 171 62.6
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 3.2e-54 215.7 206 51.9
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 3.6e-53 212.2 149 65.8
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 6.1e-53 211.5 189 54.5
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 1.0e-52 210.7 153 58.8
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 5.2e-52 208.4 148 68.2
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 8.8e-52 207.6 157 63.1
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 1.1e-51 207.2 169 59.2
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 5.5e-46 188.3 150 60.7
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 1.2e-45 187.2 151 56.3
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 2.1e-45 186.4 150 56.0
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 2.7e-45 186.0 128 65.6
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 1.8e-44 183.3 130 66.2
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 2.3e-44 183.0 128 66.4
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 1.4e-41 173.7 108 71.3
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 9.1e-41 171.0 107 71.0
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 2.7e-37 159.5 125 56.0
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 3.6e-37 159.1 135 58.5
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 4.0e-36 155.6 142 50.7
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 1.2e-35 154.1 112 64.3
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 1.2e-35 154.1 154 48.1
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 1.4e-33 147.1 91 71.4
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 1.8e-33 146.7 147 46.9
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 1.6e-32 143.7 96 68.8
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 2.7e-32 142.9 120 51.7
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 2.7e-32 142.9 224 37.9
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 2.5e-30 136.3 80 75.0
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 2.1e-29 133.3 88 63.6
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 3.1e-25 119.4 83 65.1
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 9.5e-22 107.8 164 40.9
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 8.9e-20 101.3 98 53.1
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 2.0e-19 100.1 179 35.8
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.4e-09 66.6 44 70.5


User provided reference genes

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