Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 4.9e-216 754.2 389 100.0
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 1.4e-194 682.9 419 85.9
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 4.1e-194 681.4 419 85.7
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 2.9e-192 675.2 419 85.7
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.2e-191 671.8 418 84.2
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 8.2e-187 657.1 419 84.0
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 8.0e-174 614.0 423 78.0
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.0e-173 613.6 424 76.9
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 5.9e-169 597.8 424 76.2
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 1.7e-155 553.1 423 71.2
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 5.4e-154 548.1 422 71.8
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 4.7e-142 508.4 428 65.0
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.7e-107 393.7 426 55.4
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 8.7e-104 381.3 427 53.9
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.6e-102 377.1 405 55.6
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.8e-101 373.6 420 55.2
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 6.9e-101 371.7 403 55.6
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 3.9e-96 355.9 417 54.7
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.8e-93 347.1 418 52.6
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 6.5e-83 312.0 172 93.6
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 9.3e-82 308.1 429 43.6
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 1.0e-80 304.7 402 49.8
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 3.3e-79 299.7 429 43.8
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 2.2e-75 287.0 430 42.1
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 2.9e-75 286.6 428 40.9
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 1.1e-74 284.6 429 42.9
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 2.5e-74 283.5 429 42.7
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 2.1e-73 280.4 429 41.5
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 2.1e-73 280.4 437 40.5
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 9.7e-71 271.6 422 41.0
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 9.7e-71 271.6 427 39.3
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 3.7e-70 269.6 434 39.6
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 6.3e-70 268.9 431 39.0
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 6.3e-70 268.9 434 39.9
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 5.3e-69 265.8 433 40.0
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 3.4e-68 263.1 439 40.8
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 1.4e-66 257.7 424 41.3
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 5.5e-66 255.8 432 38.4
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.4e-64 251.1 427 39.1
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.1e-63 248.1 427 38.4
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.0e-63 247.3 427 38.4
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.0e-63 247.3 427 37.5
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 5.7e-63 245.7 445 36.6
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.7e-62 244.2 423 40.0
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 2.2e-62 243.8 402 43.8
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.2e-62 243.8 423 40.0
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 2.8e-62 243.4 426 38.5
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 4.8e-62 242.7 423 40.0
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 4.8e-62 242.7 423 39.2
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 6.3e-62 242.3 433 37.2
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 8.2e-62 241.9 433 37.9
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.1e-61 241.5 423 39.5
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.4e-61 241.1 433 37.0
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.2e-60 238.0 427 37.9
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 1.2e-60 238.0 430 39.5
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 2.0e-60 237.3 444 36.0
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.9e-59 233.4 423 38.8
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 5.0e-59 232.6 156 81.4
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 1.5e-58 231.1 156 80.8
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 1.5e-58 231.1 156 80.8
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.5e-58 230.3 437 35.5
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.2e-57 228.0 156 80.8
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.2e-57 228.0 426 36.4
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 2.1e-57 227.3 414 36.2
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 2.1e-57 227.3 426 37.8
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.0e-56 224.9 413 37.8
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.8e-56 224.2 405 37.5
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.3e-56 223.8 400 38.0
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.0e-56 223.4 421 36.8
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 5.2e-56 222.6 309 44.3
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 5.7e-55 219.2 428 36.7
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 1.3e-54 218.0 364 38.7
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 3.7e-54 216.5 315 43.8
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 1.1e-53 214.9 423 35.2
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 1.8e-53 214.2 423 34.5
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 4.1e-53 213.0 429 36.4
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 5.3e-53 212.6 145 80.7
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 5.3e-53 212.6 432 38.9
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 5.3e-53 212.6 432 38.9
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 5.3e-53 212.6 457 32.4
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 7.0e-53 212.2 423 34.3
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 2.0e-52 210.7 434 37.1
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.0e-52 210.7 428 37.6
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 2.6e-52 210.3 416 34.6
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 5.9e-52 209.1 446 34.3
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 2.2e-51 207.2 430 36.5
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.8e-51 206.5 439 34.4
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 5.0e-51 206.1 428 35.5
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 4.2e-50 203.0 442 34.6
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 2.1e-49 200.7 423 34.5
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 2.1e-49 200.7 303 44.6
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 8.0e-49 198.7 430 36.5
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.0e-48 198.4 451 33.9
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.8e-48 197.6 441 34.7
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 4.0e-48 196.4 430 35.3
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 6.8e-48 195.7 437 32.7
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.2e-47 194.9 405 34.3
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 2.6e-47 193.7 421 34.9
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 3.4e-47 193.4 202 58.4
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 3.4e-47 193.4 439 32.8
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 7.5e-47 192.2 424 34.0
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 9.8e-47 191.8 437 32.3
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 9.8e-47 191.8 440 33.4
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.3e-46 191.4 304 38.5
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 1.3e-46 191.4 323 38.4
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.1e-45 188.3 425 33.9
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.4e-45 188.0 414 34.5
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 2.4e-45 187.2 307 41.4
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 7.0e-45 185.7 446 33.4
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 1.2e-44 184.9 441 33.6
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.2e-44 184.9 398 35.2
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 1.6e-44 184.5 424 34.7
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 2.0e-44 184.1 440 33.9
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.7e-44 183.7 430 35.1
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.7e-44 183.7 430 35.1
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 2.7e-44 183.7 444 32.4
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.3e-43 181.4 435 33.3
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 5.0e-43 179.5 401 35.9
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 6.5e-43 179.1 426 33.8
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 8.5e-43 178.7 426 33.3
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 4.7e-41 172.9 135 75.6
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.8e-40 171.0 432 31.0
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 4.0e-40 169.9 309 38.2
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 5.2e-40 169.5 428 31.5
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.5e-39 167.9 311 38.6
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 2.6e-39 167.2 364 33.8
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.4e-39 166.8 267 40.1
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 5.7e-39 166.0 428 29.9
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.2e-38 164.1 267 39.0
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.2e-36 158.3 188 46.8
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.5e-31 141.4 433 29.6
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 6.4e-30 136.0 227 38.3
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 3.2e-29 133.7 316 34.2
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 5.9e-28 129.4 341 33.1
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 6.6e-27 125.9 226 36.7
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.6e-25 121.3 389 29.6
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.1e-25 120.9 407 28.7
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 6.2e-25 119.4 247 33.6
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 7.0e-21 105.9 214 36.9
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 1.2e-20 105.1 83 60.2
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 1.2e-20 105.1 83 60.2
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 6.6e-19 99.4 67 71.6
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 6.6e-19 99.4 67 71.6
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 6.6e-19 99.4 67 71.6
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 3.3e-18 97.1 62 72.6
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 3.6e-17 93.6 83 56.6
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 3.6e-17 93.6 259 31.3
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 8.1e-17 92.4 94 52.1
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 8.1e-17 92.4 66 66.7
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 1.1e-13 82.0 54 70.4
BolC5t28964H Brassica oleracea HOM05D004053 ORTHO05D005065 1.4e-13 81.6 104 48.1
C05p54450 Brassica napus HOM05D021248 ORTHO05D018618 9.2e-13 79.0 60 70.0
C01p45260 Brassica napus HOM05D021248 ORTHO05D018618 2.1e-12 77.8 52 73.1
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 7.8e-12 75.9 225 28.9
BolC5t34111H Brassica oleracea HOM05D004053 ORTHO05D018618 1.7e-11 74.7 47 74.5
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 1.9e-10 71.2 85 47.1
A04p06740 Brassica napus HOM05D004053 ORTHO05D033555 5.6e-10 69.7 39 79.5
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 9.5e-10 68.9 176 29.5
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.1e-09 67.8 127 36.2
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.4e-07 60.1 56 55.4
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 1.7e-06 58.2 155 32.3


User provided reference genes

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