Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 9.7e-95 350.1 177 100.0
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 7.5e-79 297.4 179 88.8
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 3.7e-78 295.0 180 87.8
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.1e-77 293.5 179 87.7
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 9.2e-77 290.4 179 87.2
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 9.2e-77 290.4 179 87.2
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 9.2e-77 290.4 179 87.2
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 4.0e-72 275.0 177 80.2
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 7.0e-69 264.2 177 77.4
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.2e-55 220.3 179 68.2
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 2.2e-54 216.1 175 66.9
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 3.7e-54 215.3 179 66.5
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.6e-52 209.9 176 61.9
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 2.7e-52 209.1 168 64.9
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 3.5e-52 208.8 179 69.3
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 5.1e-51 204.9 176 61.4
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 8.6e-51 204.1 173 63.0
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.2e-49 200.3 178 63.5
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 6.2e-49 198.0 175 60.6
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 8.1e-49 197.6 185 62.7
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 4.0e-48 195.3 176 59.7
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 4.0e-48 195.3 176 59.7
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 7.6e-47 191.0 175 59.4
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 1.3e-46 190.3 181 58.6
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.7e-46 189.9 175 59.4
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.7e-46 189.9 175 59.4
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 2.9e-46 189.1 175 58.9
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 4.9e-46 188.3 175 58.9
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 1.4e-45 186.8 174 56.9
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 9.3e-45 184.1 173 57.2
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.0e-43 179.1 137 70.1
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.1e-42 177.2 133 70.7
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 1.8e-40 169.9 171 57.3
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 5.6e-34 148.3 168 50.0
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 2.8e-33 146.0 180 51.1
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.1e-33 144.4 183 45.9
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.4e-32 142.9 188 46.8
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 6.9e-32 141.4 191 46.1
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.2e-31 140.6 177 48.6
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.2e-31 140.6 186 45.7
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 1.7e-30 136.7 174 47.7
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 2.2e-30 136.3 180 43.3
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 8.4e-30 134.4 167 47.9
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.1e-29 134.0 168 48.8
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.9e-29 133.3 167 46.7
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.9e-29 133.3 194 40.7
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-29 132.9 176 46.0
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 9.3e-29 131.0 184 42.9
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.2e-28 130.6 174 44.8
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 1.6e-28 130.2 181 46.4
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.1e-28 129.8 176 45.5
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 2.1e-28 129.8 186 43.5
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 2.7e-28 129.4 186 43.0
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 2.7e-28 129.4 189 41.3
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 3.5e-28 129.0 178 43.3
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 4.6e-28 128.6 195 41.5
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.0e-28 128.3 187 44.4
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 6.0e-28 128.3 186 44.6
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.9e-28 127.9 182 45.6
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.9e-28 127.9 189 42.3
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 7.9e-28 127.9 185 44.9
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.0e-27 127.5 178 43.3
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.0e-27 125.9 179 45.3
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.9e-27 125.6 187 42.8
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 5.1e-27 125.2 191 45.0
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.1e-26 124.0 173 46.8
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.5e-26 123.6 186 44.1
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.9e-26 123.2 176 45.5
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.9e-26 123.2 160 47.5
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 1.9e-26 123.2 180 42.8
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 2.5e-26 122.9 173 46.8
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 2.5e-26 122.9 172 44.8
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 2.5e-26 122.9 189 44.4
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 3.3e-26 122.5 194 42.3
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 3.3e-26 122.5 170 41.8
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.3e-26 122.5 192 39.1
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 4.3e-26 122.1 181 43.6
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 4.3e-26 122.1 188 39.9
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 4.3e-26 122.1 176 43.8
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.6e-26 121.7 170 45.9
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 5.6e-26 121.7 161 45.3
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 7.4e-26 121.3 182 42.3
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 7.4e-26 121.3 181 44.2
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.6e-26 120.9 180 46.1
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 9.6e-26 120.9 177 44.6
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 9.6e-26 120.9 185 40.5
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 9.6e-26 120.9 175 45.1
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 9.6e-26 120.9 183 44.8
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 1.3e-25 120.6 183 45.9
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.6e-25 120.2 182 45.1
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 1.6e-25 120.2 182 42.3
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 2.1e-25 119.8 180 42.8
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 2.1e-25 119.8 174 42.0
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-25 119.8 174 44.3
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 2.1e-25 119.8 182 40.7
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 2.8e-25 119.4 179 43.0
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 2.8e-25 119.4 174 40.8
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.8e-25 119.4 180 43.3
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.7e-25 119.0 189 38.6
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.8e-25 118.6 194 40.2
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 4.8e-25 118.6 175 44.0
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 8.1e-25 117.9 184 43.5
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 1.1e-24 117.5 204 36.8
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 2.4e-24 116.3 179 45.8
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 2.4e-24 116.3 175 43.4
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 3.1e-24 115.9 182 39.6
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.1e-24 115.9 177 43.5
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 4.0e-24 115.5 181 40.3
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.9e-24 114.8 180 43.9
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 6.9e-24 114.8 165 41.2
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.0e-24 114.4 174 43.7
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.2e-23 114.0 166 44.0
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 2.6e-23 112.8 179 39.1
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 2.6e-23 112.8 174 40.8
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 3.4e-23 112.5 172 43.0
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 3.4e-23 112.5 196 38.8
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 5.8e-23 111.7 192 39.6
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 7.6e-23 111.3 174 39.1
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.3e-22 110.5 173 44.5
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.3e-22 110.5 173 43.4
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.7e-22 110.2 170 41.2
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-22 110.2 160 45.6
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-22 110.2 170 44.1
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 1.7e-22 110.2 181 40.3
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.9e-22 109.4 196 39.3
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 2.9e-22 109.4 166 43.4
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 4.9e-22 108.6 184 41.8
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 6.5e-22 108.2 192 36.5
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.4e-21 107.1 202 38.1
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 2.5e-21 106.3 203 37.4
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.5e-21 106.3 203 37.4
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 4.2e-21 105.5 182 37.9
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 4.2e-21 105.5 207 36.2
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 7.1e-21 104.8 202 37.1
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 6.0e-20 101.7 214 35.0
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 6.0e-20 101.7 185 36.8
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 7.9e-20 101.3 178 41.0
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 1.0e-19 100.9 184 35.9
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.3e-19 100.5 158 44.9
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 2.3e-19 99.8 176 38.6
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 3.0e-19 99.4 168 41.1
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.9e-19 99.0 159 42.1
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.7e-19 98.2 165 42.4
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.7e-18 95.1 172 36.0
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 9.6e-18 94.4 144 40.3
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.1e-17 93.2 168 38.1
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.8e-17 92.8 168 38.1
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 3.7e-17 92.4 166 40.4
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 6.2e-17 91.7 176 37.5
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 1.4e-16 90.5 172 39.0
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-16 90.1 139 43.2
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.2e-15 87.4 150 41.3
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.5e-15 87.0 124 41.1
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 2.9e-14 82.8 171 37.4
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.5e-14 81.6 158 40.5
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 9.3e-13 77.8 100 46.0
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 2.1e-12 76.6 171 33.9
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 2.7e-12 76.3 213 30.5
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.8e-11 73.6 161 35.4
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 3.9e-11 72.4 178 32.6
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.8e-09 66.2 109 36.7
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.8e-09 66.2 90 43.3
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 3.7e-09 65.9 201 31.3
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 4.8e-09 65.5 202 32.7
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.3e-09 65.1 90 42.2
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 4.1e-08 62.4 149 34.9
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.5e-07 60.5 66 50.0
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.9e-07 58.5 90 38.9
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 5.9e-07 58.5 202 29.2
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.2e-06 56.6 173 30.1
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 3.8e-06 55.8 104 35.6
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 5.0e-06 55.5 196 31.1
TAR629G3365 Trochodendron aralioides HOM05D001131 ORTHO05D000972 8.5e-06 54.7 192 25.0


User provided reference genes

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