Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02433 Brassica carinata HOM05D005426 ORTHO05D012988 4.6e-158 561.2 292 100.0
C09p51340 Brassica napus HOM05D012466 ORTHO05D012988 1.3e-35 154.5 148 58.8
BcaB05g23732 Brassica carinata HOM05D003065 ORTHO05D003802 1.1e-34 151.4 96 84.4
BolC9t57993H Brassica oleracea HOM05D012466 ORTHO05D012988 1.1e-34 151.4 147 57.8
BcaB08g36290 Brassica carinata HOM05D012466 ORTHO05D012988 2.7e-33 146.7 147 55.8
A10p16300 Brassica napus HOM05D012466 ORTHO05D012988 2.6e-28 130.2 148 52.0
BraA10t43713Z Brassica rapa HOM05D012466 ORTHO05D012988 7.6e-28 128.6 147 51.7
BcaB02g11244 Brassica carinata HOM05D012466 ORTHO05D012988 7.9e-25 118.6 123 55.3
BcaB01g01136 Brassica carinata HOM05D000353 ORTHO05D013242 4.3e-15 86.3 57 75.4
BcaB05g23079 Brassica carinata HOM05D000353 ORTHO05D013242 7.4e-15 85.5 57 75.4
BcaB02g11474 Brassica carinata HOM05D000589 ORTHO05D013242 9.7e-15 85.1 57 73.7
BcaB03g16438 Brassica carinata HOM05D000353 ORTHO05D013242 1.3e-14 84.7 57 75.4
BcaB08g35927 Brassica carinata HOM05D025466 ORTHO05D013242 1.6e-14 84.3 57 75.4
AL2G21140 Arabidopsis lyrata HOM05D005426 ORTHO05D006996 2.1e-14 84.0 44 93.2
AT1G65320 Arabidopsis thaliana HOM05D005426 ORTHO05D006996 2.1e-14 84.0 44 93.2
A07p32800 Brassica napus HOM05D005426 ORTHO05D006996 2.1e-14 84.0 44 93.2
C06p39010 Brassica napus HOM05D005426 ORTHO05D006996 2.1e-14 84.0 44 93.2
BolC6t38993H Brassica oleracea HOM05D005426 ORTHO05D006996 2.1e-14 84.0 44 93.2
BraA07t30907Z Brassica rapa HOM05D005426 ORTHO05D006996 2.1e-14 84.0 44 93.2
Thhalv10018605m.g Eutrema salsugineum HOM05D005426 ORTHO05D006996 2.1e-14 84.0 44 93.2
TAR633G1216 Trochodendron aralioides HOM05D005426 ORTHO05D006996 2.8e-14 83.6 45 88.9
Aa31LG2G2420 Aethionema arabicum HOM05D005426 ORTHO05D006996 3.7e-14 83.2 75 60.0
BcaB05g23573 Brassica carinata HOM05D000589 ORTHO05D013242 4.8e-14 82.8 57 73.7
BcaNung05534 Brassica carinata HOM05D005426 ORTHO05D006996 4.8e-14 82.8 44 90.9
Carub.0002s1099 Capsella rubella HOM05D005426 ORTHO05D006996 4.8e-14 82.8 44 90.9
CARHR056990 Cardamine hirsuta HOM05D005426 ORTHO05D006996 4.8e-14 82.8 44 90.9
Sp5g19990 Schrenkiella parvula HOM05D005426 ORTHO05D006996 4.8e-14 82.8 44 90.9
Solyc04g056630.3 Solanum lycopersicum HOM05D005426 ORTHO05D006996 6.3e-14 82.4 50 84.0
Sopen04g025550 Solanum pennellii HOM05D005426 ORTHO05D006996 6.3e-14 82.4 50 84.0
PGSC0003DMG400010533 Solanum tuberosum HOM05D005426 ORTHO05D006996 6.3e-14 82.4 50 84.0
Actinidia03832 Actinidia chinensis HOM05D005426 ORTHO05D006996 1.1e-13 81.6 45 88.9
Actinidia06809 Actinidia chinensis HOM05D005426 ORTHO05D006996 1.1e-13 81.6 45 88.9
MELO3C008749.2 Cucumis melo HOM05D005426 ORTHO05D006996 1.1e-13 81.6 45 86.7
CsaV3_2G009590 Cucumis sativus L. HOM05D005426 ORTHO05D006996 1.1e-13 81.6 45 86.7
Gohir.A11G304050 Gossypium hirsutum HOM05D005426 ORTHO05D006996 1.1e-13 81.6 42 92.9
Gorai.007G349600 Gossypium raimondii HOM05D005426 ORTHO05D006996 1.1e-13 81.6 42 92.9
Sed0025831 Sechium edule HOM05D005426 ORTHO05D006996 1.1e-13 81.6 45 86.7
THA.LOC104821953 Tarenaya hassleriana HOM05D005426 ORTHO05D006996 1.1e-13 81.6 42 95.2
Ciclev10012096m.g Citrus clementina HOM05D005426 ORTHO05D006996 1.4e-13 81.3 45 88.9
CANSAT54G2247 Cannabis sativa HOM05D005426 ORTHO05D006996 1.8e-13 80.9 45 86.7
FvH4_6g00690 Fragaria vesca HOM05D005426 ORTHO05D006996 1.8e-13 80.9 45 86.7
FAN09G3203 Fragaria x ananassa HOM05D005426 ORTHO05D006996 1.8e-13 80.9 45 86.7
FAN14G1411 Fragaria x ananassa HOM05D005426 ORTHO05D006996 1.8e-13 80.9 45 86.7
BcaB07g32511 Brassica carinata HOM05D005426 ORTHO05D006996 2.4e-13 80.5 43 90.7
CDE05G2572 Ceratophyllum demersum HOM05D005426 ORTHO05D006996 2.4e-13 80.5 50 78.0
CDE05G2651 Ceratophyllum demersum HOM05D005426 ORTHO05D006996 2.4e-13 80.5 50 78.0
ClCG11G010880 Citrullus lanatus HOM05D005426 ORTHO05D006996 2.4e-13 80.5 45 84.4
Gohir.D11G319500 Gossypium hirsutum HOM05D005426 ORTHO05D006996 2.4e-13 80.5 42 90.5
Nitab4.5_0000946g0070 Nicotiana tabacum HOM05D005426 ORTHO05D006996 2.4e-13 80.5 58 72.4
Nitab4.5_0001857g0010 Nicotiana tabacum HOM05D005426 ORTHO05D006996 2.4e-13 80.5 58 72.4
Oeu057509.1 Olea europaea HOM05D005426 ORTHO05D006996 2.4e-13 80.5 45 82.2
Peaxi162Scf00976g00112 Petunia axillaris HOM05D005426 ORTHO05D006996 2.4e-13 80.5 50 82.0
Rhsim05G0168400 Rhododendron simsii HOM05D005426 ORTHO05D006996 2.4e-13 80.5 42 92.9
Sed0018334 Sechium edule HOM05D005426 ORTHO05D006996 2.4e-13 80.5 42 90.5
THA.LOC104823814 Tarenaya hassleriana HOM05D005426 ORTHO05D006996 2.4e-13 80.5 42 92.9
CSS0022114 Camellia sinensis var. sinensis HOM05D005426 ORTHO05D006996 3.1e-13 80.1 42 90.5
CAN.G217.1 Capsicum annuum HOM05D005426 ORTHO05D006996 3.1e-13 80.1 50 82.0
Dinv02954 Davidia involucrata HOM05D005426 ORTHO05D006996 3.1e-13 80.1 45 84.4
TAR362G1314 Trochodendron aralioides HOM05D005426 ORTHO05D006996 3.1e-13 80.1 45 84.4
unitig_736.g22805 Utricularia gibba HOM05D005426 ORTHO05D006996 3.1e-13 80.1 47 78.7
Atru.chr12.1803 Acer truncatum HOM05D005426 ORTHO05D006996 4.1e-13 79.7 44 84.1
Atru.chr12.1804 Acer truncatum HOM05D005426 ORTHO05D006996 4.1e-13 79.7 44 84.1
FAN05G3082 Fragaria x ananassa HOM05D005426 ORTHO05D006996 4.1e-13 79.7 45 84.4
Sabra19G0062300 Salix brachista HOM05D005426 ORTHO05D006996 4.1e-13 79.7 48 79.2
arahy.Tifrunner.gnm1.ann1.UZF72T Arachis hypogaea HOM05D005426 ORTHO05D006996 5.3e-13 79.3 46 80.4
arahy.Tifrunner.gnm1.ann1.V3Q9UL Arachis hypogaea HOM05D005426 ORTHO05D006996 5.3e-13 79.3 46 80.4
BcaNung05687 Brassica carinata HOM05D000353 ORTHO05D013242 5.3e-13 79.3 53 75.5
FAN02G2606 Fragaria x ananassa HOM05D005426 ORTHO05D006996 5.3e-13 79.3 45 82.2
MBI07_g22285_MAGBIO Magnolia biondii HOM05D005426 ORTHO05D006996 6.9e-13 79.0 42 90.5
RcHm_v2.0_Chr3g0448131 Rosa chinensis HOM05D005426 ORTHO05D006996 6.9e-13 79.0 45 84.4
SalBow6G7075 Salvia bowleyana HOM05D005426 ORTHO05D006996 6.9e-13 79.0 42 90.5
DCAR_023850 Daucus carota HOM05D005426 ORTHO05D006996 9.0e-13 78.6 43 86.0
Oeu062056.1 Olea europaea HOM05D005426 ORTHO05D006996 9.0e-13 78.6 45 82.2
Potri.013G087100 Populus trichocarpa HOM05D005426 ORTHO05D006996 9.0e-13 78.6 43 86.0
PGR119G1058 Punica granatum HOM05D005426 ORTHO05D006996 9.0e-13 78.6 45 84.4
Sabra13G0076900 Salix brachista HOM05D005426 ORTHO05D006996 9.0e-13 78.6 43 86.0
ATR0561G270 Amborella trichopoda HOM05D005426 ORTHO05D006996 1.2e-12 78.2 45 82.2
Duzib177G1068 Durio zibethinus HOM05D005426 ORTHO05D006996 1.2e-12 78.2 42 90.5
Eucgr.B01402 Eucalyptus grandis HOM05D005426 ORTHO05D006996 1.2e-12 78.2 49 77.6
Gohir.A13G154600 Gossypium hirsutum HOM05D005426 ORTHO05D006996 1.2e-12 78.2 42 90.5
Gohir.D13G159300 Gossypium hirsutum HOM05D005426 ORTHO05D006996 1.2e-12 78.2 42 90.5
Gorai.013G180000 Gossypium raimondii HOM05D005426 ORTHO05D006996 1.2e-12 78.2 42 90.5
Peaxi162Scf00156g00415 Petunia axillaris HOM05D005426 ORTHO05D006996 1.2e-12 78.2 43 81.4
Potri.019G052650 Populus trichocarpa HOM05D005426 ORTHO05D006996 1.2e-12 78.2 45 82.2
Thecc.05G201400 Theobroma cacao HOM05D005426 ORTHO05D006996 1.2e-12 78.2 42 90.5
TWI36G0998 Tripterygium wilfordii HOM05D005426 ORTHO05D006996 1.2e-12 78.2 45 82.2
Cfa006272 Carpinus fangiana HOM05D005426 ORTHO05D006996 1.5e-12 77.8 45 84.4
CiPaw.07G079000 Carya illinoinensis HOM05D005426 ORTHO05D006996 1.5e-12 77.8 45 84.4
THA.LOC104805695 Tarenaya hassleriana HOM05D005426 ORTHO05D006996 1.5e-12 77.8 42 88.1
Ah.06g195530 Amaranthus hybridus HOM05D005426 ORTHO05D006996 2.0e-12 77.4 45 80.0
Duzib128G0943 Durio zibethinus HOM05D005426 ORTHO05D006996 2.0e-12 77.4 42 88.1
Manes.08G104500 Manihot esculenta HOM05D005426 ORTHO05D006996 2.0e-12 77.4 43 81.4
Lsat_1_v5_gn_8_2121 Lactuca sativa HOM05D005426 ORTHO05D006996 2.6e-12 77.0 42 88.1
PSO170G2522 Papaver somniferum HOM05D005426 ORTHO05D006996 2.6e-12 77.0 42 88.1
MSTRG.322 Avicennia marina HOM05D005426 ORTHO05D006996 3.4e-12 76.6 42 88.1
AUR62000325 Chenopodium quinoa HOM05D005426 ORTHO05D006996 3.4e-12 76.6 42 85.7
Haze_04540 Corylus avellana HOM05D005426 ORTHO05D006996 3.4e-12 76.6 45 82.2
HPP92_003199 Vanilla planifolia HOM05D005426 ORTHO05D006996 3.4e-12 76.6 48 75.0
AUR62006669 Chenopodium quinoa HOM05D005426 ORTHO05D006996 4.5e-12 76.3 42 83.3
COL.COLO4_27401 Corchorus olitorius HOM05D005426 ORTHO05D006996 4.5e-12 76.3 42 88.1
Nn3g20159 Nelumbo nucifera HOM05D005426 ORTHO05D006996 4.5e-12 76.3 42 83.3
Prupe.6G359700 Prunus persica HOM05D005426 ORTHO05D006996 4.5e-12 76.3 45 77.8
SGA_v2.0_scaffold122G33173 Striga asiatica HOM05D005426 ORTHO05D006996 4.5e-12 76.3 45 77.8
GSVIVG01019128001 Vitis vinifera HOM05D005426 ORTHO05D006996 4.5e-12 76.3 42 85.7
MSTRG.8218 Avicennia marina HOM05D005426 ORTHO05D006996 5.9e-12 75.9 42 85.7
Aqoxy2G04057 Aquilegia oxysepala HOM05D005426 ORTHO05D006996 7.6e-12 75.5 47 76.6
Medtr7g079680 Medicago truncatula HOM05D005426 ORTHO05D006996 7.6e-12 75.5 45 73.3
ECA233G3371 Erigeron canadensis HOM05D005426 ORTHO05D006996 1.0e-11 75.1 42 85.7
Glyma.09G251700 Glycine max HOM05D005426 ORTHO05D006996 1.0e-11 75.1 45 75.6
HanXRQChr05g0156971 Helianthus annuus HOM05D005426 ORTHO05D006996 1.0e-11 75.1 42 85.7
MD12G1259100 Malus domestica HOM05D005426 ORTHO05D006996 1.0e-11 75.1 55 69.1
BcaB04g18091 Brassica carinata HOM05D000353 ORTHO05D013242 1.3e-11 74.7 53 71.7
Glyma.18G240900 Glycine max HOM05D005426 ORTHO05D006996 1.3e-11 74.7 45 73.3
PSO357G0677 Papaver somniferum HOM05D005426 ORTHO05D006996 1.3e-11 74.7 42 85.7
Migut.F01881 Erythranthe guttata HOM05D005426 ORTHO05D006996 1.7e-11 74.3 43 79.1
Psat3g103920 Pisum sativum HOM05D005426 ORTHO05D006996 1.7e-11 74.3 45 73.3
EL10Ac4g09981 Beta vulgaris HOM05D005426 ORTHO05D006996 2.2e-11 73.9 45 75.6
Lj1g0020299 Lotus japonicus HOM05D005426 ORTHO05D006996 2.2e-11 73.9 45 73.3
Manes.09G184500 Manihot esculenta HOM05D005426 ORTHO05D006996 2.2e-11 73.9 42 78.6
TPR.G28454 Trifolium pratense HOM05D005426 ORTHO05D006996 2.2e-11 73.9 45 73.3
Phvul.008G055300 Phaseolus vulgaris HOM05D005426 ORTHO05D006996 3.8e-11 73.2 43 76.7
BcaB06g26938 Brassica carinata HOM05D000353 ORTHO05D013242 1.1e-10 71.6 54 68.5
MD04G1243500 Malus domestica HOM05D005426 ORTHO05D006996 1.4e-10 71.2 57 64.9
Cpa.g.sc123.5 Carica papaya HOM05D005426 ORTHO05D006996 1.9e-10 70.9 38 86.8
SEGI_22479 Sequoiadendron giganteum HOM05D005426 ORTHO05D006996 2.5e-10 70.5 43 76.7
Cc09_g03460 Coffea canephora HOM05D005426 ORTHO05D006996 3.2e-10 70.1 45 75.6
Dinv29116 Davidia involucrata HOM05D005426 ORTHO05D006996 4.2e-10 69.7 74 55.4
Os01g0920000 Oryza sativa ssp. japonica HOM05D005426 ORTHO05D006996 4.2e-10 69.7 42 73.8
Ca_07968_v3 Cicer arietinum L. HOM05D005426 ORTHO05D006996 5.5e-10 69.3 74 48.6
Lalb_Chr01g0020331 Lupinus albus HOM05D005426 ORTHO05D006996 5.5e-10 69.3 45 71.1
Sc09g0001540 Simmondsia chinensis HOM05D005426 ORTHO05D006996 5.5e-10 69.3 45 73.3
VMungo1383G1630 Vigna mungo HOM05D005426 ORTHO05D006996 7.2e-10 68.9 43 74.4
Zm00001eb143290 Zea mays HOM05D005426 ORTHO05D006996 9.3e-10 68.6 71 49.3
Hund07333 Selenicereus undatus HOM05D005426 ORTHO05D006996 1.2e-09 68.2 45 71.1
BcaB01g01538 Brassica carinata HOM05D011453 ORTHO05D014511 6.1e-09 65.9 46 73.9
BcaB05g22477 Brassica carinata HOM05D012466 ORTHO05D012988 6.1e-09 65.9 158 34.8
AUR62000324 Chenopodium quinoa HOM05D005426 ORTHO05D006996 6.1e-09 65.9 35 85.7
Lalb_Chr19g0126721 Lupinus albus HOM05D005426 ORTHO05D006996 7.9e-09 65.5 96 45.8
BcaB06g26826 Brassica carinata HOM05D000589 ORTHO05D013242 1.3e-08 64.7 38 84.2
Lj1C584T2 Lonicera japonica HOM05D005426 ORTHO05D006996 2.3e-08 63.9 35 85.7
BcaB01g00737 Brassica carinata HOM05D009963 ORTHO05D013780 6.7e-08 62.4 34 88.2
AT5G59230 Arabidopsis thaliana HOM05D003218 ORTHO05D012988 1.5e-07 61.2 145 33.8
Carub.0008s1972 Capsella rubella HOM05D003218 ORTHO05D012988 1.5e-07 61.2 156 35.3
Hund21893 Selenicereus undatus HOM05D005426 ORTHO05D006996 1.5e-07 61.2 41 68.3
Hund27503 Selenicereus undatus HOM05D005426 ORTHO05D006996 1.5e-07 61.2 41 68.3
SpUn0001_0840 Schrenkiella parvula HOM05D012466 ORTHO05D012988 1.9e-07 60.8 86 48.8


User provided reference genes

Program Settings