Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02407 Brassica carinata HOM05D001921 ORTHO05D001784 2.1e-71 272.3 141 100.0
BcaB01g02410 Brassica carinata HOM05D001921 ORTHO05D001784 2.1e-71 272.3 141 100.0
C03p38190 Brassica napus HOM05D001921 ORTHO05D001784 3.9e-54 214.9 143 84.6
A03p31290 Brassica napus HOM05D001921 ORTHO05D001784 3.6e-52 208.4 146 80.1
BraA03t12309Z Brassica rapa HOM05D001921 ORTHO05D001784 6.2e-52 207.6 146 80.1
BcaC01g06781 Brassica carinata HOM05D001921 ORTHO05D001784 1.1e-51 206.8 142 82.4
BolC3t16100H Brassica oleracea HOM05D001921 ORTHO05D001784 1.1e-51 206.8 142 82.4
Sp6g01920 Schrenkiella parvula HOM05D001921 ORTHO05D001784 3.1e-35 152.1 158 62.0
BcaC04g24030 Brassica carinata HOM05D001921 ORTHO05D001784 1.3e-33 146.7 154 61.0
BolC9t53094H Brassica oleracea HOM05D001921 ORTHO05D001784 3.8e-33 145.2 154 59.7
A09p01490 Brassica napus HOM05D001921 ORTHO05D001784 1.9e-32 142.9 153 58.8
C09p01610 Brassica napus HOM05D001921 ORTHO05D001784 1.9e-32 142.9 154 59.1
BraA09t35810Z Brassica rapa HOM05D001921 ORTHO05D001784 1.9e-32 142.9 153 58.8
Thhalv10029029m.g Eutrema salsugineum HOM05D001921 ORTHO05D001784 4.6e-31 138.3 168 56.0
BcaB01g02085 Brassica carinata HOM05D001921 ORTHO05D001784 1.8e-30 136.3 164 54.3
Carub.0006s3519 Capsella rubella HOM05D001921 ORTHO05D001784 1.3e-25 120.2 164 48.2
AL6G51210 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 6.5e-25 117.9 164 51.2
BcaC04g24029 Brassica carinata HOM05D000361 ORTHO05D004243 3.6e-23 112.1 134 58.2
CARHR249650 Cardamine hirsuta HOM05D001921 ORTHO05D001784 1.3e-20 103.6 160 45.0
AT4G02040 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 2.8e-20 102.4 155 46.5
BcaB01g02086 Brassica carinata HOM05D001921 ORTHO05D001784 3.2e-16 89.0 97 56.7
Cfa020875 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.8e-14 83.2 147 38.8
COL.COLO4_18732 Corchorus olitorius HOM05D001921 ORTHO05D001784 2.6e-13 79.3 168 40.5
CSS0005509 Camellia sinensis var. sinensis HOM05D001921 ORTHO05D001784 4.4e-13 78.6 154 41.6
Duzib187G0406 Durio zibethinus HOM05D001921 ORTHO05D001784 4.4e-13 78.6 168 41.7
Rhsim03G0253600 Rhododendron simsii HOM05D001921 ORTHO05D001784 7.4e-13 77.8 142 45.8
Haze_19306 Corylus avellana HOM05D001921 ORTHO05D001784 9.7e-13 77.4 148 37.2
TWI34G0586 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 2.2e-12 76.3 156 39.7
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 2.8e-12 75.9 155 41.3
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 2.8e-12 75.9 155 41.3
Lj6g0019201 Lotus japonicus HOM05D001921 ORTHO05D001784 2.8e-12 75.9 104 45.2
Phvul.003G175500 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 6.3e-12 74.7 160 38.1
Gohir.A06G095800 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.1e-11 73.9 147 41.5
Glyma.17G104300 Glycine max HOM05D001921 ORTHO05D001784 1.4e-11 73.6 161 34.2
Hma1.2p1_2976F.1_g331170 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.4e-11 73.6 96 52.1
Psat1g022640 Pisum sativum HOM05D001921 ORTHO05D001784 1.8e-11 73.2 145 35.2
Gohir.D06G096000 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.4e-11 72.8 124 43.5
Gorai.010G110500 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.4e-11 72.8 129 41.9
Hma1.2p1_0028F.1_g017215 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 2.4e-11 72.8 96 50.0
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.1e-11 72.4 133 39.1
Ca_03892_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 4.1e-11 72.0 121 38.8
Gohir.D06G095900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.1e-11 72.0 129 41.9
Gorai.010G110700 Gossypium raimondii HOM05D001921 ORTHO05D001784 4.1e-11 72.0 124 42.7
TWI63G1839 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 5.3e-11 71.6 98 48.0
Gohir.A06G095900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 7.0e-11 71.2 158 38.6
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 7.0e-11 71.2 155 34.8
Sed0017709 Sechium edule HOM05D001921 ORTHO05D001784 1.2e-10 70.5 124 41.9
TPR.G15777 Trifolium pratense HOM05D001921 ORTHO05D001784 1.2e-10 70.5 112 43.8
VMungo1215G2840 Vigna mungo HOM05D001921 ORTHO05D001784 1.2e-10 70.5 160 36.2
Dinv03420 Davidia involucrata HOM05D001921 ORTHO05D001784 1.6e-10 70.1 128 39.8
Psat4g034000 Pisum sativum HOM05D001921 ORTHO05D001784 1.6e-10 70.1 131 38.9
Dinv41418 Davidia involucrata HOM05D001921 ORTHO05D001784 2.0e-10 69.7 152 39.5
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 2.0e-10 69.7 116 42.2
DCAR_014829 Daucus carota HOM05D001921 ORTHO05D001784 2.6e-10 69.3 117 43.6
CiPaw.15G179300 Carya illinoinensis HOM05D001921 ORTHO05D001784 3.5e-10 68.9 156 37.2
CiPaw.16G117000 Carya illinoinensis HOM05D001921 ORTHO05D001784 3.5e-10 68.9 155 37.4
Prupe.7G253300 Prunus persica HOM05D001921 ORTHO05D001784 4.5e-10 68.6 132 40.2
CiPaw.07G227300 Carya illinoinensis HOM05D001921 ORTHO05D001784 5.9e-10 68.2 113 41.6
Manes.06G040800 Manihot esculenta HOM05D001921 ORTHO05D001784 5.9e-10 68.2 159 34.0
Cpa.g.sc46.103 Carica papaya HOM05D001921 ORTHO05D001784 7.7e-10 67.8 175 35.4
Medtr4g116830 Medicago truncatula HOM05D001921 ORTHO05D001784 7.7e-10 67.8 114 43.9
QL02p091546 Quercus lobata HOM05D001921 ORTHO05D001784 1.0e-09 67.4 130 38.5
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 1.7e-09 66.6 107 43.0
ClCG11G003650 Citrullus lanatus HOM05D001921 ORTHO05D001784 1.7e-09 66.6 151 35.1
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 2.9e-09 65.9 122 39.3
Ciclev10009542m.g Citrus clementina HOM05D001921 ORTHO05D001784 3.8e-09 65.5 103 40.8
DCAR_017895 Daucus carota HOM05D001921 ORTHO05D001784 5.0e-09 65.1 81 46.9
MD02G1012300 Malus domestica HOM05D001921 ORTHO05D001784 5.0e-09 65.1 169 34.9
MD15G1158100 Malus domestica HOM05D001921 ORTHO05D001784 5.0e-09 65.1 169 35.5
Nn2g12262 Nelumbo nucifera HOM05D001921 ORTHO05D001784 5.0e-09 65.1 161 33.5
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 6.5e-09 64.7 120 40.0
Ca_21607_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 8.5e-09 64.3 124 35.5
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 8.5e-09 64.3 124 37.9
FAN23G0500 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.1e-08 63.9 170 35.9
FAN26G0252 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.5e-08 63.5 171 35.7
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 1.5e-08 63.5 93 41.9
MELO3C004451.2 Cucumis melo HOM05D001921 ORTHO05D001784 1.9e-08 63.2 153 35.9
Thecc.09G037400 Theobroma cacao HOM05D001921 ORTHO05D001784 1.9e-08 63.2 134 38.1
Actinidia23087 Actinidia chinensis HOM05D001921 ORTHO05D001784 2.5e-08 62.8 98 41.8
FvH4_1g01550 Fragaria vesca HOM05D001921 ORTHO05D001784 2.5e-08 62.8 172 36.6
Lalb_Chr11g0072831 Lupinus albus HOM05D001921 ORTHO05D001784 2.5e-08 62.8 112 40.2
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 2.5e-08 62.8 153 32.7
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 2.5e-08 62.8 153 34.6
PGSC0003DMG400029898 Solanum tuberosum HOM05D001921 ORTHO05D001784 2.5e-08 62.8 147 34.0
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 3.2e-08 62.4 94 43.6
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.2e-08 62.4 138 38.4
Medtr2g461300 Medicago truncatula HOM05D001921 ORTHO05D001784 4.2e-08 62.0 105 43.8
PGR102G2943 Punica granatum HOM05D001921 ORTHO05D001784 4.2e-08 62.0 101 43.6
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 5.5e-08 61.6 94 44.7
TPR.G22804 Trifolium pratense HOM05D001921 ORTHO05D001784 5.5e-08 61.6 80 46.2
EL10Ac6g15007 Beta vulgaris HOM05D001921 ORTHO05D001784 7.2e-08 61.2 128 37.5
Prupe.1G486700 Prunus persica HOM05D001921 ORTHO05D001784 9.4e-08 60.8 117 37.6
Prupe.1G486800 Prunus persica HOM05D001921 ORTHO05D001784 9.4e-08 60.8 123 38.2
TWI63G0810 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 9.4e-08 60.8 118 38.1
AUR62041439 Chenopodium quinoa HOM05D001921 ORTHO05D001784 1.2e-07 60.5 156 36.5
AUR62042019 Chenopodium quinoa HOM05D001921 ORTHO05D001784 1.2e-07 60.5 156 36.5
AUR62043765 Chenopodium quinoa HOM05D001921 ORTHO05D001784 1.2e-07 60.5 156 36.5
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.2e-07 60.5 98 36.7
Sopen08g012070 Solanum pennellii HOM05D001921 ORTHO05D001784 1.2e-07 60.5 146 32.9
AUR62011266 Chenopodium quinoa HOM05D001921 ORTHO05D001784 1.6e-07 60.1 154 37.0
FAN28G2602 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.6e-07 60.1 171 36.3
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.6e-07 60.1 94 41.5
FAN19G1379 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.1e-07 59.7 172 36.0
Oeu012641.1 Olea europaea HOM05D001921 ORTHO05D001784 2.1e-07 59.7 116 39.7
Peaxi162Scf00116g00043 Petunia axillaris HOM05D001921 ORTHO05D001784 2.1e-07 59.7 114 36.8
Solyc08g041860.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 2.1e-07 59.7 148 34.5
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 2.7e-07 59.3 121 36.4
Glyma.04G063200 Glycine max HOM05D001921 ORTHO05D001784 2.7e-07 59.3 138 32.6
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 2.7e-07 59.3 88 42.0
Lj4g0015946 Lotus japonicus HOM05D001921 ORTHO05D001784 2.7e-07 59.3 100 38.0
TAR383G0606 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.7e-07 59.3 167 32.9
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 3.6e-07 58.9 135 36.3
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.6e-07 58.9 120 40.0
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 4.7e-07 58.5 94 39.4
THA.LOC104826571 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 4.7e-07 58.5 164 33.5
CANSAT11G0699 Cannabis sativa HOM05D001921 ORTHO05D001784 6.1e-07 58.2 177 31.1
RcHm_v2.0_Chr2g0086511 Rosa chinensis HOM05D001921 ORTHO05D001784 6.1e-07 58.2 178 34.8
Glyma.13G156700 Glycine max HOM05D001921 ORTHO05D001784 8.0e-07 57.8 167 35.3
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 8.0e-07 57.8 122 37.7
TWI32G1277 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 8.0e-07 57.8 122 36.1
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 1.0e-06 57.4 78 42.3
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 1.0e-06 57.4 134 38.1
CsaV3_2G003470 Cucumis sativus L. HOM05D001921 ORTHO05D001784 1.0e-06 57.4 149 36.9
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.0e-06 57.4 121 36.4
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 1.0e-06 57.4 112 34.8
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 1.4e-06 57.0 133 36.1
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.4e-06 57.0 99 38.4
Sc14g0000060 Simmondsia chinensis HOM05D001921 ORTHO05D001784 1.4e-06 57.0 137 35.8
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 1.8e-06 56.6 81 38.3
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 1.8e-06 56.6 81 38.3
CiPaw.08G008000 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.8e-06 56.6 141 36.9
Glyma.06G064500 Glycine max HOM05D001921 ORTHO05D001784 1.8e-06 56.6 122 36.9
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.8e-06 56.6 122 36.1
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.3e-06 56.2 168 30.4
Potri.018G022400 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.3e-06 56.2 97 40.2
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 3.0e-06 55.8 117 35.9
MD15G1131400 Malus domestica HOM05D001921 ORTHO05D001784 3.0e-06 55.8 125 36.0
COL.COLO4_18922 Corchorus olitorius HOM05D001921 ORTHO05D001784 4.0e-06 55.5 122 36.1
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 4.0e-06 55.5 111 37.8
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 4.0e-06 55.5 152 33.6
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 4.0e-06 55.5 100 36.0
Aqoxy7G03512 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 5.2e-06 55.1 178 32.6
CAN.G142.1 Capsicum annuum HOM05D001921 ORTHO05D001784 5.2e-06 55.1 164 33.5
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 5.2e-06 55.1 158 31.6
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 5.2e-06 55.1 106 34.9
Actinidia38704 Actinidia chinensis HOM05D001921 ORTHO05D001784 6.7e-06 54.7 160 34.4
Sabra06G0203000 Salix brachista HOM05D001921 ORTHO05D001784 6.7e-06 54.7 117 36.8
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 8.8e-06 54.3 112 41.1
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 8.8e-06 54.3 130 34.6
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 8.8e-06 54.3 130 34.6
Manes.03G011300 Manihot esculenta HOM05D001921 ORTHO05D001784 8.8e-06 54.3 114 37.7
SabraUnG0005100 Salix brachista HOM05D001921 ORTHO05D001784 8.8e-06 54.3 117 36.8


User provided reference genes

Program Settings