Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02396 Brassica carinata HOM05D016122 ORTHO05D013210 1.2e-67 259.6 123 100.0
BolC3t16110H Brassica oleracea HOM05D016122 ORTHO05D013210 6.8e-63 243.8 135 88.9
BcaB01g02395 Brassica carinata HOM05D016122 ORTHO05D013210 4.9e-61 237.7 141 84.4
BcaB05g23124 Brassica carinata HOM05D016122 ORTHO05D013210 1.5e-30 136.3 77 81.8
BolC6t38258H Brassica oleracea HOM05D016122 ORTHO05D013210 4.5e-22 108.2 78 66.7
BraA07t30438Z Brassica rapa HOM05D016122 ORTHO05D013210 1.0e-21 107.1 78 65.4
C06p30940 Brassica napus HOM05D000517 ORTHO05D019904 1.7e-21 106.3 78 64.1
BraA03t13486Z Brassica rapa HOM05D017391 ORTHO05D013210 1.4e-18 96.7 82 51.2
BcaC01g03345 Brassica carinata HOM05D017391 ORTHO05D013210 1.9e-17 92.8 78 52.6
C03p53440 Brassica napus HOM05D017391 ORTHO05D013210 5.7e-17 91.3 81 51.9
A03p43490 Brassica napus HOM05D000517 ORTHO05D013210 4.1e-15 85.1 75 49.3
BcaB03g14600 Brassica carinata HOM05D017391 ORTHO05D013210 2.2e-13 79.3 84 48.8
Sc14g0006770 Simmondsia chinensis HOM05D000517 ORTHO05D000751 1.2e-11 73.6 55 58.2
Hund19496 Selenicereus undatus HOM05D000517 ORTHO05D000751 6.7e-10 67.8 55 52.7
EL10Ac2g03987 Beta vulgaris HOM05D000517 ORTHO05D000751 1.5e-09 66.6 53 56.6
BcaC06g31272 Brassica carinata HOM05D000517 ORTHO05D000751 2.0e-09 66.2 55 47.3
BcaC06g31274 Brassica carinata HOM05D000517 ORTHO05D000751 2.0e-09 66.2 55 47.3
Thhalv10009860m.g Eutrema salsugineum HOM05D000517 ORTHO05D000751 2.0e-09 66.2 56 53.6
Thhalv10027392m.g Eutrema salsugineum HOM05D000517 ORTHO05D011962 3.3e-09 65.5 73 41.1
BraA03t15309Z Brassica rapa HOM05D000517 ORTHO05D011962 7.4e-09 64.3 54 50.0
CANSAT78G1167 Cannabis sativa HOM05D000517 ORTHO05D000751 7.4e-09 64.3 51 47.1
C07p32570 Brassica napus HOM05D000517 ORTHO05D000751 9.7e-09 63.9 54 46.3
Glyma.14G212100 Glycine max HOM05D000517 ORTHO05D000751 9.7e-09 63.9 52 55.8
BcaC06g34130 Brassica carinata HOM05D000517 ORTHO05D000751 1.3e-08 63.5 67 40.3
A06p44140 Brassica napus HOM05D000517 ORTHO05D000751 1.3e-08 63.5 54 48.1
THA.LOC104825569 Tarenaya hassleriana HOM05D000517 ORTHO05D000751 1.3e-08 63.5 51 49.0
BraA06t27288Z Brassica rapa HOM05D000517 ORTHO05D000751 1.7e-08 63.2 54 48.1
Psat2g045000 Pisum sativum HOM05D000517 ORTHO05D000751 1.7e-08 63.2 53 52.8
Gohir.D13G026900 Gossypium hirsutum HOM05D000517 ORTHO05D000751 2.2e-08 62.8 52 50.0
Peaxi162Scf00205g00817 Petunia axillaris HOM05D000517 ORTHO05D000751 2.2e-08 62.8 53 49.1
MSTRG.2113 Avicennia marina HOM05D000517 ORTHO05D000751 2.8e-08 62.4 45 60.0
C07p32370 Brassica napus HOM05D000517 ORTHO05D000751 2.8e-08 62.4 65 47.7
BolC7t43773H Brassica oleracea HOM05D000517 ORTHO05D000751 2.8e-08 62.4 65 47.7
MD13G1017200 Malus domestica HOM05D000517 ORTHO05D000751 2.8e-08 62.4 52 48.1
Medtr5g077430 Medicago truncatula HOM05D000517 ORTHO05D000751 2.8e-08 62.4 52 53.8
BolC7t43771H Brassica oleracea HOM05D000517 ORTHO05D000751 3.7e-08 62.0 54 46.3
BraA03t15273Z Brassica rapa HOM05D000517 ORTHO05D011962 3.7e-08 62.0 49 55.1
MD16G1015000 Malus domestica HOM05D000517 ORTHO05D000751 3.7e-08 62.0 51 51.0
SGA_v2.0_scaffold3G01758 Striga asiatica HOM05D000517 ORTHO05D000751 3.7e-08 62.0 56 48.2
CARHR237440 Cardamine hirsuta HOM05D000517 ORTHO05D011962 4.8e-08 61.6 60 46.7
MD16G1015200 Malus domestica HOM05D000517 ORTHO05D000751 4.8e-08 61.6 51 51.0
Aa31LG7G9390 Aethionema arabicum HOM05D000517 ORTHO05D000751 6.3e-08 61.2 52 46.2
BraA03t15288Z Brassica rapa HOM05D000517 ORTHO05D011962 6.3e-08 61.2 49 55.1
Lalb_Chr08g0230511 Lupinus albus HOM05D000517 ORTHO05D000751 6.3e-08 61.2 56 44.6
QL03p038510 Quercus lobata HOM05D000517 ORTHO05D000751 6.3e-08 61.2 44 56.8
BcaC06g34110 Brassica carinata HOM05D000517 ORTHO05D000751 8.2e-08 60.8 54 44.4
A06p44000 Brassica napus HOM05D000517 ORTHO05D000751 8.2e-08 60.8 54 44.4
BraA06t27275Z Brassica rapa HOM05D000517 ORTHO05D000751 8.2e-08 60.8 54 44.4
CiPaw.05G188100 Carya illinoinensis HOM05D000517 ORTHO05D000751 1.1e-07 60.5 53 50.9
AUR62041964 Chenopodium quinoa HOM05D000517 ORTHO05D000751 1.1e-07 60.5 53 49.1
Glyma.02G242700 Glycine max HOM05D000517 ORTHO05D000751 1.1e-07 60.5 52 53.8
Ah.16g105980 Amaranthus hybridus HOM05D000517 ORTHO05D000751 1.4e-07 60.1 52 51.9
AL5G10940 Arabidopsis lyrata HOM05D000517 ORTHO05D000751 1.4e-07 60.1 55 49.1
arahy.Tifrunner.gnm1.ann1.BM213N Arachis hypogaea HOM05D000517 ORTHO05D000751 1.4e-07 60.1 53 49.1
C07p32550 Brassica napus HOM05D000517 ORTHO05D000751 1.4e-07 60.1 65 43.1
BolC7t43783H Brassica oleracea HOM05D000517 ORTHO05D000751 1.4e-07 60.1 65 43.1
Migut.E00505 Erythranthe guttata HOM05D000517 ORTHO05D000751 1.4e-07 60.1 51 51.0
Gohir.A13G028100 Gossypium hirsutum HOM05D000517 ORTHO05D000751 1.4e-07 60.1 52 48.1
Gorai.013G030200 Gossypium raimondii HOM05D000517 ORTHO05D000751 1.4e-07 60.1 52 48.1
AT1G24650 Arabidopsis thaliana HOM05D000517 ORTHO05D000751 1.8e-07 59.7 52 48.1
AT2G01820 Arabidopsis thaliana HOM05D000517 ORTHO05D000751 1.8e-07 59.7 50 50.0
arahy.Tifrunner.gnm1.ann1.5M0T8F Arachis hypogaea HOM05D000517 ORTHO05D000751 1.8e-07 59.7 53 49.1
C07p32350 Brassica napus HOM05D000517 ORTHO05D000751 1.8e-07 59.7 54 44.4
Duzib248G0475 Durio zibethinus HOM05D000517 ORTHO05D000751 1.8e-07 59.7 48 50.0
Hund03384 Selenicereus undatus HOM05D000517 ORTHO05D000751 1.8e-07 59.7 53 49.1
BcaC03g17078 Brassica carinata HOM05D000517 ORTHO05D000751 2.4e-07 59.3 54 46.3
A06p44020 Brassica napus HOM05D000517 ORTHO05D000751 2.4e-07 59.3 65 43.1
C02p49960 Brassica napus HOM05D000517 ORTHO05D000751 2.4e-07 59.3 54 46.3
BolC2t11075H Brassica oleracea HOM05D000517 ORTHO05D000751 2.4e-07 59.3 54 46.3
BraA06t27277Z Brassica rapa HOM05D000517 ORTHO05D000751 2.4e-07 59.3 65 43.1
Carub.0002s1214 Capsella rubella HOM05D000517 ORTHO05D000751 2.4e-07 59.3 56 50.0
CARHR144380 Cardamine hirsuta HOM05D000517 ORTHO05D000751 2.4e-07 59.3 52 51.9
TPR.G9987 Trifolium pratense HOM05D000517 ORTHO05D000751 2.4e-07 59.3 53 50.9
Actinidia12437 Actinidia chinensis HOM05D000517 ORTHO05D000751 3.1e-07 58.9 52 46.2
arahy.Tifrunner.gnm1.ann1.F5TB6F Arachis hypogaea HOM05D000072 ORTHO05D000026 3.1e-07 58.9 56 42.9
arahy.Tifrunner.gnm1.ann1.KQ7W38 Arachis hypogaea HOM05D000072 ORTHO05D000026 3.1e-07 58.9 56 42.9
BcaB07g30370 Brassica carinata HOM05D000517 ORTHO05D000751 3.1e-07 58.9 54 44.4
BraA02t08254Z Brassica rapa HOM05D000517 ORTHO05D000751 3.1e-07 58.9 54 46.3
Lalb_Chr10g0104191 Lupinus albus HOM05D000517 ORTHO05D000751 3.1e-07 58.9 46 50.0
Manes.01G121400 Manihot esculenta HOM05D000517 ORTHO05D000751 3.1e-07 58.9 52 50.0
Manes.17G086400 Manihot esculenta HOM05D000517 ORTHO05D000751 3.1e-07 58.9 46 52.2
Nitab4.5_0009512g0010 Nicotiana tabacum HOM05D000517 ORTHO05D000751 3.1e-07 58.9 50 52.0
Oeu059513.1 Olea europaea HOM05D000517 ORTHO05D000751 3.1e-07 58.9 53 50.9
SEGI_18171 Sequoiadendron giganteum HOM05D000517 ORTHO05D000751 3.1e-07 58.9 55 43.6
THA.LOC104805638 Tarenaya hassleriana HOM05D000517 ORTHO05D000751 3.1e-07 58.9 55 50.9
AL1G40250 Arabidopsis lyrata HOM05D000517 ORTHO05D000751 4.1e-07 58.5 52 46.2
BcaB03g15289 Brassica carinata HOM05D000517 ORTHO05D000751 4.1e-07 58.5 55 47.3
A02p32370 Brassica napus HOM05D000517 ORTHO05D000751 4.1e-07 58.5 54 46.3
CARHR026430 Cardamine hirsuta HOM05D000517 ORTHO05D000751 4.1e-07 58.5 45 57.8
BolC7t42342H Brassica oleracea HOM05D000517 ORTHO05D000751 5.3e-07 58.2 55 47.3
Duzib251G0267 Durio zibethinus HOM05D000517 ORTHO05D000751 5.3e-07 58.2 52 44.2
Duzib268G1173 Durio zibethinus HOM05D000517 ORTHO05D000751 5.3e-07 58.2 53 45.3
Medtr4g044393 Medicago truncatula HOM05D000072 ORTHO05D000026 5.3e-07 58.2 50 50.0
Nitab4.5_0003234g0020 Nicotiana tabacum HOM05D000517 ORTHO05D000751 5.3e-07 58.2 50 52.0
THA.LOC104822048 Tarenaya hassleriana HOM05D000517 ORTHO05D000751 5.3e-07 58.2 55 50.9
A01p31290 Brassica napus HOM05D000517 ORTHO05D000751 7.0e-07 57.8 50 42.0
BraA01t03254Z Brassica rapa HOM05D000517 ORTHO05D000751 7.0e-07 57.8 50 42.0
AUR62041961 Chenopodium quinoa HOM05D000517 ORTHO05D000751 7.0e-07 57.8 53 47.2
Duzib251G0733 Durio zibethinus HOM05D000517 ORTHO05D000751 7.0e-07 57.8 52 44.2
Phvul.001G265500 Phaseolus vulgaris HOM05D000517 ORTHO05D000751 7.0e-07 57.8 50 46.0
Prupe.1G336300 Prunus persica HOM05D000517 ORTHO05D000751 7.0e-07 57.8 46 50.0
Sp1g23130 Schrenkiella parvula HOM05D000517 ORTHO05D000751 7.0e-07 57.8 55 49.1
VMungo1383G3353 Vigna mungo HOM05D000517 ORTHO05D000751 7.0e-07 57.8 43 53.5
AT1G66150 Arabidopsis thaliana HOM05D000517 ORTHO05D000751 9.1e-07 57.4 56 48.2
A07p00990 Brassica napus HOM05D000517 ORTHO05D000751 9.1e-07 57.4 54 51.9
BraA07t27900Z Brassica rapa HOM05D000517 ORTHO05D000751 9.1e-07 57.4 54 51.9
Carub.0005s0079 Capsella rubella HOM05D000517 ORTHO05D000751 9.1e-07 57.4 54 48.1
COL.COLO4_05054 Corchorus olitorius HOM05D000517 ORTHO05D000751 9.1e-07 57.4 52 42.3
BcaC06g36614 Brassica carinata HOM05D000517 ORTHO05D000751 1.2e-06 57.0 54 51.9
C07p02140 Brassica napus HOM05D000517 ORTHO05D000751 1.2e-06 57.0 54 51.9
BolC7t40620H Brassica oleracea HOM05D000517 ORTHO05D000751 1.2e-06 57.0 54 51.9
Cc03_g09320 Coffea canephora HOM05D000517 ORTHO05D000751 1.2e-06 57.0 45 53.3
Lalb_Chr07g0186911 Lupinus albus HOM05D000517 ORTHO05D000751 1.2e-06 57.0 43 53.5
Medtr3g084510 Medicago truncatula HOM05D000517 ORTHO05D000751 1.2e-06 57.0 50 50.0
Sp5g21210 Schrenkiella parvula HOM05D000517 ORTHO05D000751 1.2e-06 57.0 55 45.5
SEGI_16951 Sequoiadendron giganteum HOM05D000517 ORTHO05D000751 1.2e-06 57.0 47 48.9
SGA_v2.0_scaffold23G10142 Striga asiatica HOM05D000517 ORTHO05D000751 1.2e-06 57.0 50 46.0
TWI77G0674 Tripterygium wilfordii HOM05D000517 ORTHO05D000751 1.2e-06 57.0 46 50.0
BcaC06g35243 Brassica carinata HOM05D000517 ORTHO05D000751 1.5e-06 56.6 55 47.3
C07p18320 Brassica napus HOM05D000517 ORTHO05D000751 1.5e-06 56.6 55 47.3
Cfa015055 Carpinus fangiana HOM05D000517 ORTHO05D000751 1.5e-06 56.6 43 55.8
AUR62009236 Chenopodium quinoa HOM05D000517 ORTHO05D000751 1.5e-06 56.6 53 47.2
Cc11_g06270 Coffea canephora HOM05D000517 ORTHO05D000751 1.5e-06 56.6 53 43.4
Glyma.18G003000 Glycine max HOM05D000517 ORTHO05D000751 1.5e-06 56.6 43 51.2
Phvul.003G015800 Phaseolus vulgaris HOM05D000517 ORTHO05D000751 1.5e-06 56.6 53 50.9
VMungo1215G1437 Vigna mungo HOM05D000517 ORTHO05D000751 1.5e-06 56.6 53 50.9
A07p12390 Brassica napus HOM05D000517 ORTHO05D000751 2.0e-06 56.2 55 47.3
BraA07t29019Z Brassica rapa HOM05D000517 ORTHO05D000751 2.0e-06 56.2 55 47.3
Ciclev10004322m.g Citrus clementina HOM05D000517 ORTHO05D000751 2.0e-06 56.2 52 48.1
Sc14g0007660 Simmondsia chinensis HOM05D000517 ORTHO05D000751 2.0e-06 56.2 53 43.4
VMungo0647G0682 Vigna mungo HOM05D000517 ORTHO05D000751 2.0e-06 56.2 53 47.2
Aqoxy2G03909 Aquilegia oxysepala HOM05D000517 ORTHO05D000751 2.6e-06 55.8 54 46.3
AL2G23780 Arabidopsis lyrata HOM05D000517 ORTHO05D000751 2.6e-06 55.8 49 49.0
BcaB03g14017 Brassica carinata HOM05D000517 ORTHO05D000751 2.6e-06 55.8 55 49.1
Sp2g13250 Schrenkiella parvula HOM05D000517 ORTHO05D000751 2.6e-06 55.8 52 46.2
BcaC06g31275 Brassica carinata HOM05D000517 ORTHO05D000751 3.4e-06 55.5 56 46.4
BcaC08g46076 Brassica carinata HOM05D000517 ORTHO05D000751 3.4e-06 55.5 55 47.3
A03p66850 Brassica napus HOM05D000517 ORTHO05D000751 3.4e-06 55.5 45 55.6
BolC6t39035H Brassica oleracea HOM05D000517 ORTHO05D000751 3.4e-06 55.5 55 47.3
BraA01t02794Z Brassica rapa HOM05D000517 ORTHO05D000751 3.4e-06 55.5 45 55.6
Ca_16427_v3 Cicer arietinum L. HOM05D000517 ORTHO05D000751 3.4e-06 55.5 50 46.0
Glyma.08G107700 Glycine max HOM05D000517 ORTHO05D000751 3.4e-06 55.5 49 49.0
Sabra17G0110800 Salix brachista HOM05D000517 ORTHO05D000751 3.4e-06 55.5 49 49.0
Sp3g21460 Schrenkiella parvula HOM05D000517 ORTHO05D000751 3.4e-06 55.5 53 43.4
CSS0043045 Camellia sinensis var. sinensis HOM05D000517 ORTHO05D000751 4.5e-06 55.1 50 44.0
Glyma.05G150800 Glycine max HOM05D000517 ORTHO05D000751 4.5e-06 55.1 49 49.0
Glyma.11G254000 Glycine max HOM05D000517 ORTHO05D000751 4.5e-06 55.1 43 51.2
Sabra17G0113800 Salix brachista HOM05D000517 ORTHO05D000751 4.5e-06 55.1 46 50.0
MSTRG.13639 Avicennia marina HOM05D000517 ORTHO05D000751 5.9e-06 54.7 54 44.4
A07p33150 Brassica napus HOM05D000517 ORTHO05D000751 5.9e-06 54.7 55 45.5
BolC1t03940H Brassica oleracea HOM05D000517 ORTHO05D000751 5.9e-06 54.7 50 40.0
BraA07t30943Z Brassica rapa HOM05D000517 ORTHO05D000751 5.9e-06 54.7 55 45.5
Carub.0001s2545 Capsella rubella HOM05D000517 ORTHO05D000751 5.9e-06 54.7 51 49.0
Cpa.g.sc2.144 Carica papaya HOM05D000517 ORTHO05D000751 5.9e-06 54.7 52 40.4
HanXRQChr17g0566051 Helianthus annuus HOM05D000517 ORTHO05D000751 5.9e-06 54.7 43 51.2
Manes.15G137200 Manihot esculenta HOM05D000517 ORTHO05D000751 5.9e-06 54.7 48 45.8
Medtr1g033010 Medicago truncatula HOM05D000517 ORTHO05D000751 5.9e-06 54.7 54 48.1
Sed0020781 Sechium edule HOM05D000517 ORTHO05D000751 5.9e-06 54.7 50 44.0
Aa31LG2G2860 Aethionema arabicum HOM05D000517 ORTHO05D000751 7.7e-06 54.3 55 45.5
Ca_05777_v3 Cicer arietinum L. HOM05D000517 ORTHO05D000751 7.7e-06 54.3 46 43.5
Peaxi162Scf00516g00424 Petunia axillaris HOM05D000517 ORTHO05D000751 7.7e-06 54.3 49 49.0
Phvul.008G238600 Phaseolus vulgaris HOM05D000517 ORTHO05D000751 7.7e-06 54.3 53 47.2
Potri.017G134900 Populus trichocarpa HOM05D000517 ORTHO05D000751 7.7e-06 54.3 46 50.0
Thecc.04G057400 Theobroma cacao HOM05D000517 ORTHO05D000751 7.7e-06 54.3 52 48.1
vmacro00558 Vaccinium macrocarpon HOM05D000517 ORTHO05D000751 7.7e-06 54.3 45 55.6


User provided reference genes

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