Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02393 Brassica carinata HOM05D006913 ORTHO05D008720 2.2e-67 258.8 133 100.0
BcaC01g06792 Brassica carinata HOM05D006913 ORTHO05D008720 3.2e-66 255.0 131 100.0
C03p38310 Brassica napus HOM05D006913 ORTHO05D008720 3.2e-66 255.0 131 100.0
BolC3t16112H Brassica oleracea HOM05D006913 ORTHO05D008720 3.2e-66 255.0 131 100.0
BraA03t12321Z Brassica rapa HOM05D006913 ORTHO05D008720 3.2e-66 255.0 131 100.0
A03p31400 Brassica napus HOM05D006913 ORTHO05D008720 1.2e-65 253.1 131 99.2
BcaB01g02398 Brassica carinata HOM05D006913 ORTHO05D008720 1.6e-65 252.7 131 99.2
Sp6g01770 Schrenkiella parvula HOM05D006913 ORTHO05D008720 6.7e-64 247.3 129 96.9
Thhalv10028983m.g Eutrema salsugineum HOM05D006913 ORTHO05D008720 1.5e-63 246.1 131 96.2
Carub.0006s3531 Capsella rubella HOM05D006913 ORTHO05D008720 2.5e-63 245.4 132 94.7
AT4G01900 Arabidopsis thaliana HOM05D006913 ORTHO05D008720 7.4e-63 243.8 132 94.7
AL6G51370 Arabidopsis lyrata HOM05D006913 ORTHO05D008720 6.3e-62 240.7 132 92.4
THA.LOC104801315 Tarenaya hassleriana HOM05D006913 ORTHO05D008720 2.4e-61 238.8 133 92.5
Aa31LG5G1440 Aethionema arabicum HOM05D006913 ORTHO05D008720 2.7e-57 225.3 124 91.1
MELO3C023629.2 Cucumis melo HOM05D006913 ORTHO05D008720 1.3e-54 216.5 124 84.7
MD09G1287900 Malus domestica HOM05D006913 ORTHO05D008720 1.7e-54 216.1 125 84.0
Thecc.01G320200 Theobroma cacao HOM05D006913 ORTHO05D008720 1.7e-54 216.1 124 86.3
CsaV3_7G030270 Cucumis sativus L. HOM05D006913 ORTHO05D008720 3.7e-54 214.9 124 83.9
Prupe.3G005300 Prunus persica HOM05D006913 ORTHO05D008720 3.7e-54 214.9 124 83.9
Manes.01G231800 Manihot esculenta HOM05D006913 ORTHO05D008720 6.3e-54 214.2 132 83.3
MD17G1280100 Malus domestica HOM05D006913 ORTHO05D008720 8.2e-54 213.8 132 81.8
Atru.chr5.924 Acer truncatum HOM05D006913 ORTHO05D008720 1.8e-53 212.6 123 87.0
Ciclev10022378m.g Citrus clementina HOM05D006913 ORTHO05D008720 1.8e-53 212.6 124 84.7
RcHm_v2.0_Chr3g0486731 Rosa chinensis HOM05D006913 ORTHO05D008720 4.1e-53 211.5 130 79.2
Nn3g21840 Nelumbo nucifera HOM05D006913 ORTHO05D008720 5.3e-53 211.1 134 80.6
Medtr7g109970 Medicago truncatula HOM05D006913 ORTHO05D008720 6.9e-53 210.7 128 79.7
Lj1g0024926 Lotus japonicus HOM05D006913 ORTHO05D008720 9.1e-53 210.3 133 79.7
Aqoxy5G02741 Aquilegia oxysepala HOM05D006913 ORTHO05D008720 1.2e-52 209.9 124 83.1
Duzib138G1774 Durio zibethinus HOM05D006913 ORTHO05D008720 1.2e-52 209.9 127 84.3
Glyma.19G219300 Glycine max HOM05D006913 ORTHO05D008720 1.5e-52 209.5 134 76.9
Potri.002G191300 Populus trichocarpa HOM05D006913 ORTHO05D008720 2.0e-52 209.1 126 80.2
TPR.G4038 Trifolium pratense HOM05D006913 ORTHO05D008720 2.0e-52 209.1 132 77.3
TWI59G1195 Tripterygium wilfordii HOM05D006913 ORTHO05D008720 2.6e-52 208.8 124 83.1
TAR362G1022 Trochodendron aralioides HOM05D006913 ORTHO05D008720 2.6e-52 208.8 131 80.9
FvH4_1g26590 Fragaria vesca HOM05D006913 ORTHO05D008720 3.4e-52 208.4 124 81.5
FAN28G1862 Fragaria x ananassa HOM05D006913 ORTHO05D008720 3.4e-52 208.4 124 81.5
Lalb_Chr04g0260061 Lupinus albus HOM05D006913 ORTHO05D008720 3.4e-52 208.4 123 83.7
Sed0005932 Sechium edule HOM05D006913 ORTHO05D008720 3.4e-52 208.4 124 83.9
QL12p018506 Quercus lobata HOM05D006913 ORTHO05D008720 4.5e-52 208.0 129 80.6
Cpa.g.c29544.2 Carica papaya HOM05D006913 ORTHO05D008720 7.7e-52 207.2 123 84.6
VMungo1383G0882 Vigna mungo HOM05D006913 ORTHO05D008720 1.3e-51 206.5 132 79.5
Haze_05096 Corylus avellana HOM05D006913 ORTHO05D008720 1.7e-51 206.1 124 82.3
Sed0008492 Sechium edule HOM05D006913 ORTHO05D008720 1.7e-51 206.1 125 82.4
HPP92_002654 Vanilla planifolia HOM05D006913 ORTHO05D008720 1.7e-51 206.1 124 81.5
Cfa004859 Carpinus fangiana HOM05D006913 ORTHO05D008720 2.2e-51 205.7 124 82.3
CiPaw.07G121500 Carya illinoinensis HOM05D006913 ORTHO05D008720 2.9e-51 205.3 124 83.1
Psat3g018680 Pisum sativum HOM05D006913 ORTHO05D008720 6.5e-51 204.1 124 79.0
GSVIVG01028181001 Vitis vinifera HOM05D006913 ORTHO05D008720 6.5e-51 204.1 124 82.3
Dinv12109 Davidia involucrata HOM05D006913 ORTHO05D008720 1.4e-50 203.0 134 76.9
PSO170G2504 Papaver somniferum HOM05D006913 ORTHO05D008720 1.9e-50 202.6 132 76.5
PSO724G1078 Papaver somniferum HOM05D006913 ORTHO05D008720 1.9e-50 202.6 132 76.5
SalBow3G0392 Salvia bowleyana HOM05D006913 ORTHO05D008720 1.9e-50 202.6 132 78.8
arahy.Tifrunner.gnm1.ann1.6PPK8V Arachis hypogaea HOM05D006913 ORTHO05D008720 5.5e-50 201.1 123 81.3
MSTRG.21716 Avicennia marina HOM05D006913 ORTHO05D008720 5.5e-50 201.1 133 76.7
MBI18_g09652_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 5.5e-50 201.1 133 75.9
CSS0007691 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 7.2e-50 200.7 124 79.8
CSS0013168 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 7.2e-50 200.7 124 79.8
MBI18_g11536_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 9.4e-50 200.3 128 78.9
Solyc06g009400.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 9.4e-50 200.3 124 80.6
Sopen06g004130 Solanum pennellii HOM05D006913 ORTHO05D008720 9.4e-50 200.3 124 80.6
PGSC0003DMG400007277 Solanum tuberosum HOM05D006913 ORTHO05D008720 9.4e-50 200.3 124 80.6
Hma1.2p1_0408F.1_g146440 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 1.2e-49 199.9 129 79.8
Sc05g0000220 Simmondsia chinensis HOM05D006913 ORTHO05D008720 1.2e-49 199.9 124 78.2
ClCG09G004810 Citrullus lanatus HOM05D006913 ORTHO05D008720 1.6e-49 199.5 151 68.9
Glyma.03G222100 Glycine max HOM05D006913 ORTHO05D008720 1.6e-49 199.5 152 68.4
ATR0693G068 Amborella trichopoda HOM05D006913 ORTHO05D008720 2.7e-49 198.7 133 72.9
CDE11G0810 Ceratophyllum demersum HOM05D006913 ORTHO05D008720 3.6e-49 198.4 126 75.4
CAN.G1280.40 Capsicum annuum HOM05D006913 ORTHO05D008720 7.9e-49 197.2 133 75.2
PGR083G1650 Punica granatum HOM05D006913 ORTHO05D008720 7.9e-49 197.2 148 70.9
Migut.D00043 Erythranthe guttata HOM05D006913 ORTHO05D008720 1.4e-48 196.4 131 77.1
Os05g0133100 Oryza sativa ssp. japonica HOM05D006913 ORTHO05D008720 3.9e-48 194.9 132 73.5
Nitab4.5_0000363g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 2.6e-47 192.2 138 72.5
Mapoly0061s0127 Marchantia polymorpha HOM05D006913 ORTHO05D008720 3.3e-47 191.8 123 72.4
Nitab4.5_0003324g0110 Nicotiana tabacum HOM05D006913 ORTHO05D008720 3.3e-47 191.8 138 71.0
Dinv33147 Davidia involucrata HOM05D006913 ORTHO05D008720 4.4e-47 191.4 137 73.7
DCAR_002917 Daucus carota HOM05D006913 ORTHO05D008720 2.2e-46 189.1 133 71.4
FAN19G0677 Fragaria x ananassa HOM05D006913 ORTHO05D008720 2.8e-46 188.7 156 65.4
FAN26G0114 Fragaria x ananassa HOM05D006913 ORTHO05D008720 2.8e-46 188.7 156 65.4
CiPaw.08G086000 Carya illinoinensis HOM05D006913 ORTHO05D008720 6.3e-46 187.6 124 79.0
Nitab4.5_0000222g0190 Nicotiana tabacum HOM05D006913 ORTHO05D008720 6.3e-46 187.6 124 75.0
unitig_578.g16634 Utricularia gibba HOM05D006913 ORTHO05D008720 8.2e-46 187.2 131 71.0
Cc01_g21970 Coffea canephora HOM05D006913 ORTHO05D008720 1.1e-45 186.8 117 79.5
arahy.Tifrunner.gnm1.ann1.IRZ7G5 Arachis hypogaea HOM05D006913 ORTHO05D008720 2.4e-45 185.7 124 77.4
Sabra02G0164300 Salix brachista HOM05D006913 ORTHO05D008720 2.4e-45 185.7 159 61.0
Pp3c4_15530 Physcomitrium patens HOM05D006913 ORTHO05D008720 7.0e-45 184.1 124 71.8
Rhsim01G0292800 Rhododendron simsii HOM05D006913 ORTHO05D008720 8.5e-43 177.2 131 72.5
Peaxi162Scf00058g00218 Petunia axillaris HOM05D006913 ORTHO05D008720 4.7e-41 171.4 124 73.4
AagrBONN_evm.TU.Sc2ySwM_228.182 Anthoceros agrestis HOM05D006913 ORTHO05D008720 2.6e-39 165.6 122 68.9
AUR62024592 Chenopodium quinoa HOM05D006913 ORTHO05D008720 8.2e-38 160.6 109 77.1
COL.COLO4_23180 Corchorus olitorius HOM05D006913 ORTHO05D008720 8.2e-38 160.6 104 79.8
vmacro15097 Vaccinium macrocarpon HOM05D006913 ORTHO05D008720 1.2e-36 156.8 99 80.8
CARHR249910 Cardamine hirsuta HOM05D006913 ORTHO05D008720 1.6e-36 156.4 84 94.0
SEGI_19322 Sequoiadendron giganteum HOM05D006913 ORTHO05D008720 2.0e-36 156.0 103 74.8
Ca_09230_v3 Cicer arietinum L. HOM05D006913 ORTHO05D008720 4.5e-36 154.8 95 80.0
Eucgr.H00899 Eucalyptus grandis HOM05D006913 ORTHO05D008720 5.0e-35 151.4 134 64.2
SMO364G0946 Selaginella moellendorffii HOM05D006913 ORTHO05D008720 6.5e-35 151.0 103 74.8
Solyc01g015000.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 2.5e-34 149.1 99 78.8
Lj1C13T3 Lonicera japonica HOM05D006913 ORTHO05D008720 1.6e-33 146.4 95 77.9
FAN23G2363 Fragaria x ananassa HOM05D000049 ORTHO05D000027 6.1e-33 144.4 99 75.8
SGA_v2.0_scaffold80G25710 Striga asiatica HOM05D006913 ORTHO05D008720 8.0e-33 144.1 101 74.3
Hund09668 Selenicereus undatus HOM05D006913 ORTHO05D008720 1.3e-30 136.7 91 78.0
Cre07.g357350 Chlamydomonas reinhardtii HOM05D006913 ORTHO05D008720 3.7e-30 135.2 123 52.8
Duzib211G0548 Durio zibethinus HOM05D006913 ORTHO05D008720 1.6e-28 129.8 106 64.2
MCO04G045 Micromonas commoda HOM05D006913 ORTHO05D008720 1.0e-27 127.1 128 52.3
Phvul.001G215500 Phaseolus vulgaris HOM05D006913 ORTHO05D008720 1.3e-27 126.7 77 79.2
Eucgr.L01805 Eucalyptus grandis HOM05D006913 ORTHO05D008720 1.5e-23 113.2 78 71.8
GSVIVG01010608001 Vitis vinifera HOM05D006913 ORTHO05D008720 1.5e-23 113.2 71 83.1
GSVIVG01037028001 Vitis vinifera HOM05D006913 ORTHO05D008720 1.5e-23 113.2 71 83.1
Oeu038057.1 Olea europaea HOM05D006913 ORTHO05D008720 7.5e-23 110.9 130 49.2
HPP92_027922 Vanilla planifolia HOM05D006913 ORTHO05D008720 1.0e-19 100.5 60 76.7
Nitab4.5_0001013g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 9.5e-18 94.0 55 78.2
HPP92_027923 Vanilla planifolia HOM05D006913 ORTHO05D008720 2.1e-17 92.8 63 74.6
Haze_27360 Corylus avellana HOM05D006913 ORTHO05D008720 6.1e-17 91.3 109 39.4
Hma1.2p1_3252F.1_g334540 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 2.3e-16 89.4 71 67.6
C09p01450 Brassica napus HOM05D006913 ORTHO05D008720 7.0e-13 77.8 39 92.3
BolC9t53077H Brassica oleracea HOM05D006913 ORTHO05D008720 7.0e-13 77.8 39 92.3


User provided reference genes

Program Settings