Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02392 Brassica carinata HOM05D007601 ORTHO05D009605 2.7e-67 258.5 123 100.0
A03p31410 Brassica napus HOM05D007601 ORTHO05D009605 8.1e-64 246.9 122 94.3
BraA03t12322Z Brassica rapa HOM05D007601 ORTHO05D009605 6.8e-63 243.8 122 92.6
C03p38320 Brassica napus HOM05D007601 ORTHO05D009605 5.8e-62 240.7 122 91.8
BcaC01g06793 Brassica carinata HOM05D007601 ORTHO05D009605 1.7e-61 239.2 123 91.1
BcaC01g06795 Brassica carinata HOM05D007601 ORTHO05D009605 1.7e-61 239.2 123 91.1
BolC3t16113H Brassica oleracea HOM05D007601 ORTHO05D009605 1.7e-61 239.2 123 91.1
Thhalv10029076m.g Eutrema salsugineum HOM05D007601 ORTHO05D009605 1.5e-57 226.1 123 86.2
Sp6g01760 Schrenkiella parvula HOM05D007601 ORTHO05D009605 4.3e-57 224.6 124 86.3
Aa31LG5G1450 Aethionema arabicum HOM05D007601 ORTHO05D009605 2.8e-56 221.9 123 84.6
CARHR249870 Cardamine hirsuta HOM05D007601 ORTHO05D009605 4.7e-56 221.1 123 82.9
AL6G51380 Arabidopsis lyrata HOM05D007601 ORTHO05D009605 2.6e-54 215.3 123 80.5
Carub.0006s3532 Capsella rubella HOM05D007601 ORTHO05D009605 5.8e-54 214.2 121 81.0
THA.LOC104815915 Tarenaya hassleriana HOM05D007601 ORTHO05D009605 1.3e-53 213.0 119 83.2
AT4G01897 Arabidopsis thaliana HOM05D007601 ORTHO05D009605 4.2e-52 208.0 123 77.2
Ciclev10022849m.g Citrus clementina HOM05D007601 ORTHO05D009605 2.4e-47 192.2 119 73.1
Atru.chr5.923 Acer truncatum HOM05D007601 ORTHO05D009605 4.0e-47 191.4 120 72.5
Cpa.g.c29544.1 Carica papaya HOM05D007601 ORTHO05D009605 6.9e-47 190.7 120 73.3
MSTRG.18076 Avicennia marina HOM05D007601 ORTHO05D009605 4.5e-46 188.0 119 72.3
Eucgr.H00897 Eucalyptus grandis HOM05D007601 ORTHO05D009605 7.6e-46 187.2 117 70.1
Potri.002G191200 Populus trichocarpa HOM05D007601 ORTHO05D009605 2.4e-44 182.2 121 67.8
QL12p018497 Quercus lobata HOM05D007601 ORTHO05D009605 2.4e-44 182.2 116 69.8
PSO210G6513 Papaver somniferum HOM05D007601 ORTHO05D009605 3.2e-44 181.8 116 69.8
TPR.G4122 Trifolium pratense HOM05D007601 ORTHO05D009605 4.2e-44 181.4 115 70.4
Migut.D00044 Erythranthe guttata HOM05D007601 ORTHO05D009605 5.4e-44 181.0 123 68.3
Medtr7g109980 Medicago truncatula HOM05D007601 ORTHO05D009605 1.2e-43 179.9 115 69.6
Glyma.03G222200 Glycine max HOM05D007601 ORTHO05D009605 2.1e-43 179.1 115 68.7
Glyma.19G219400 Glycine max HOM05D007601 ORTHO05D009605 2.1e-43 179.1 115 68.7
Psat3g018760 Pisum sativum HOM05D007601 ORTHO05D009605 3.5e-43 178.3 115 69.6
GSVIVG01028182001 Vitis vinifera HOM05D007601 ORTHO05D009605 3.5e-43 178.3 120 66.7
Duzib138G1106 Durio zibethinus HOM05D007601 ORTHO05D009605 4.6e-43 177.9 120 67.5
Sopen06g036000 Solanum pennellii HOM05D007601 ORTHO05D009605 4.6e-43 177.9 120 66.7
Hma1.2p1_0965F.1_g242190 Hydrangea macrophylla HOM05D007601 ORTHO05D009605 7.9e-43 177.2 117 67.5
Sabra02G0164400 Salix brachista HOM05D007601 ORTHO05D009605 7.9e-43 177.2 121 66.1
TAR633G2747 Trochodendron aralioides HOM05D007601 ORTHO05D009605 7.9e-43 177.2 120 67.5
Dinv33148 Davidia involucrata HOM05D007601 ORTHO05D009605 1.3e-42 176.4 120 66.7
arahy.Tifrunner.gnm1.ann1.UJ54IQ Arachis hypogaea HOM05D007601 ORTHO05D009605 1.8e-42 176.0 119 67.2
Ca_09231_v3 Cicer arietinum L. HOM05D007601 ORTHO05D009605 1.8e-42 176.0 115 68.7
Prupe.3G005400 Prunus persica HOM05D007601 ORTHO05D009605 1.8e-42 176.0 117 68.4
Gohir.A11G107400 Gossypium hirsutum HOM05D007601 ORTHO05D009605 2.3e-42 175.6 120 67.5
arahy.Tifrunner.gnm1.ann1.FU6CGW Arachis hypogaea HOM05D007601 ORTHO05D009605 3.0e-42 175.3 119 67.2
PSO761G0263 Papaver somniferum HOM05D007601 ORTHO05D009605 3.0e-42 175.3 116 69.0
Aqoxy2G02617 Aquilegia oxysepala HOM05D007601 ORTHO05D009605 8.7e-42 173.7 117 67.5
Gohir.D11G112200 Gossypium hirsutum HOM05D007601 ORTHO05D009605 1.5e-41 172.9 119 67.2
Sc14g0006440 Simmondsia chinensis HOM05D007601 ORTHO05D009605 1.5e-41 172.9 117 65.0
VMungo1383G2396 Vigna mungo HOM05D007601 ORTHO05D009605 2.5e-41 172.2 115 70.4
COL.COLO4_23178 Corchorus olitorius HOM05D007601 ORTHO05D009605 4.3e-41 171.4 120 65.8
Manes.01G231900 Manihot esculenta HOM05D007601 ORTHO05D009605 4.3e-41 171.4 120 65.0
Phvul.001G215600 Phaseolus vulgaris HOM05D007601 ORTHO05D009605 5.6e-41 171.0 115 68.7
TWI59G0276 Tripterygium wilfordii HOM05D007601 ORTHO05D009605 5.6e-41 171.0 109 72.5
CSS0043622 Camellia sinensis var. sinensis HOM05D007601 ORTHO05D009605 7.4e-41 170.6 120 64.2
CiPaw.07G121600 Carya illinoinensis HOM05D007601 ORTHO05D009605 7.4e-41 170.6 116 66.4
MD17G1280000 Malus domestica HOM05D007601 ORTHO05D009605 9.6e-41 170.2 116 66.4
MD09G1287800 Malus domestica HOM05D007601 ORTHO05D009605 1.3e-40 169.9 116 66.4
CSS0036648 Camellia sinensis var. sinensis HOM05D007601 ORTHO05D009605 1.6e-40 169.5 120 63.3
Hund09590 Selenicereus undatus HOM05D007601 ORTHO05D009605 1.6e-40 169.5 119 63.9
Thecc.01G320300 Theobroma cacao HOM05D007601 ORTHO05D009605 3.7e-40 168.3 120 65.8
CsaV3_3G031680 Cucumis sativus L. HOM05D007601 ORTHO05D009605 4.8e-40 167.9 116 62.9
Lj1g0003568 Lotus japonicus HOM05D007601 ORTHO05D009605 4.8e-40 167.9 113 65.5
EL10As5g23595 Beta vulgaris HOM05D007601 ORTHO05D009605 6.2e-40 167.5 116 65.5
DCAR_002918 Daucus carota HOM05D007601 ORTHO05D009605 8.1e-40 167.2 120 65.0
Sed0008912 Sechium edule HOM05D007601 ORTHO05D009605 1.1e-39 166.8 117 60.7
CANSAT25G0069 Cannabis sativa HOM05D007601 ORTHO05D009605 1.8e-39 166.0 116 62.1
RcHm_v2.0_Chr3g0486741 Rosa chinensis HOM05D007601 ORTHO05D009605 1.8e-39 166.0 107 70.1
Lalb_Chr04g0260071 Lupinus albus HOM05D007601 ORTHO05D009605 2.4e-39 165.6 115 64.3
ClCG10G011680 Citrullus lanatus HOM05D007601 ORTHO05D009605 3.1e-39 165.2 140 56.4
Oeu044742.1 Olea europaea HOM05D007601 ORTHO05D009605 4.0e-39 164.9 123 60.2
FvH4_1g26600 Fragaria vesca HOM05D007601 ORTHO05D009605 5.3e-39 164.5 117 65.0
FAN26G1400 Fragaria x ananassa HOM05D007601 ORTHO05D009605 5.3e-39 164.5 117 64.1
Rhsim01G0292900 Rhododendron simsii HOM05D007601 ORTHO05D009605 6.9e-39 164.1 107 68.2
AUR62011748 Chenopodium quinoa HOM05D007601 ORTHO05D009605 1.2e-38 163.3 117 62.4
ECA248G1243 Erigeron canadensis HOM05D007601 ORTHO05D009605 8.4e-37 157.1 121 60.3
HanXRQChr01g0010181 Helianthus annuus HOM05D007601 ORTHO05D009605 1.1e-36 156.8 120 60.0
Zm00001eb043090 Zea mays HOM05D007601 ORTHO05D009605 1.1e-36 156.8 113 63.7
Cc01_g21960 Coffea canephora HOM05D007601 ORTHO05D009605 1.9e-36 156.0 122 61.5
Os03g0564200 Oryza sativa ssp. japonica HOM05D007601 ORTHO05D009605 1.6e-35 152.9 111 64.0
Gorai.007G120500 Gossypium raimondii HOM05D007601 ORTHO05D009605 2.7e-35 152.1 99 70.7
MELO3C012921.2 Cucumis melo HOM05D007601 ORTHO05D009605 1.0e-34 150.2 104 63.5
FAN19G1881 Fragaria x ananassa HOM05D007601 ORTHO05D009605 1.3e-34 149.8 144 52.8
CAN.G1209.15 Capsicum annuum HOM05D007601 ORTHO05D009605 3.9e-34 148.3 120 58.3
FAN28G1650 Fragaria x ananassa HOM05D007601 ORTHO05D009605 9.6e-33 143.7 96 66.7
Nn4g25447 Nelumbo nucifera HOM05D007601 ORTHO05D009605 2.0e-30 136.0 120 54.2
AUR62024591 Chenopodium quinoa HOM05D007601 ORTHO05D009605 9.3e-28 127.1 117 51.3
Solyc06g084625.1 Solanum lycopersicum HOM05D007601 ORTHO05D009605 6.0e-27 124.4 80 70.0
SalBow6G1877 Salvia bowleyana HOM05D007601 ORTHO05D009605 1.3e-26 123.2 79 69.6
Pp3c1_30400 Physcomitrium patens HOM05D007601 ORTHO05D009605 7.4e-25 117.5 117 51.3
AagrBONN_evm.TU.Sc2ySwM_228.1634 Anthoceros agrestis HOM05D007601 ORTHO05D009605 1.4e-23 113.2 115 47.8
FAN23G1483 Fragaria x ananassa HOM05D007601 ORTHO05D009605 1.7e-21 106.3 76 64.5
CDE05G3673 Ceratophyllum demersum HOM05D007601 ORTHO05D009605 2.2e-21 105.9 79 64.6
Thhalv10009552m.g Eutrema salsugineum HOM05D007601 ORTHO05D009605 1.1e-20 103.6 90 57.8
MBI19_g32697_MAGBIO Magnolia biondii HOM05D007601 ORTHO05D009605 2.5e-20 102.4 76 63.2
vmacro15096 Vaccinium macrocarpon HOM05D007601 ORTHO05D009605 8.8e-18 94.0 59 69.5
Mapoly0105s0007 Marchantia polymorpha HOM05D007601 ORTHO05D009605 7.4e-17 90.9 107 43.0
SMO196G0166 Selaginella moellendorffii HOM05D007601 ORTHO05D009605 2.9e-13 79.0 102 44.1
Solyc04g150173.1 Solanum lycopersicum HOM05D007601 ORTHO05D009605 1.4e-07 60.1 41 61.0


User provided reference genes

Program Settings