Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 5.1e-226 787.3 379 100.0
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.9e-220 768.8 386 96.1
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 9.3e-220 766.5 386 95.9
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-214 749.6 389 93.6
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 5.5e-212 740.7 385 93.5
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 5.5e-212 740.7 385 93.5
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.5e-209 732.6 385 92.2
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 2.0e-209 732.3 385 92.5
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 2.8e-208 728.4 388 91.8
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 4.8e-208 727.6 390 91.5
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 2.2e-205 718.8 392 89.0
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.1e-204 716.5 393 89.1
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.0e-202 709.9 397 86.9
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.8e-202 709.1 394 88.8
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 9.1e-199 696.8 379 88.9
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 9.1e-199 696.8 379 88.9
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 5.9e-198 694.1 385 88.1
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.5e-188 662.9 379 85.8
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 2.5e-188 662.1 393 83.0
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 2.9e-173 612.1 377 77.5
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 4.7e-171 604.7 376 76.6
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 8.9e-170 600.5 393 75.1
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 8.9e-170 600.5 392 74.7
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 7.0e-167 590.9 364 77.2
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.6e-166 589.7 373 74.5
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 2.7e-166 589.0 383 73.6
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 2.7e-166 589.0 369 76.2
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 4.6e-166 588.2 394 72.6
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 4.6e-166 588.2 387 73.4
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 5.9e-166 587.8 363 77.1
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.0e-165 587.0 371 75.7
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 1.7e-165 586.3 381 74.3
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.9e-165 585.1 387 72.9
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.6e-165 584.3 387 73.1
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 2.5e-164 582.4 368 76.4
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 3.3e-164 582.0 368 74.5
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 4.3e-164 581.6 366 75.7
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 7.3e-164 580.9 373 74.0
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 7.3e-164 580.9 394 72.8
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 1.8e-162 576.2 360 76.1
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 4.0e-162 575.1 373 73.5
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 6.8e-162 574.3 380 72.9
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.9e-160 568.9 367 74.7
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 8.3e-160 567.4 342 77.8
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.1e-159 567.0 379 73.9
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.4e-159 566.6 366 74.3
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.4e-159 566.6 378 74.1
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.9e-159 566.2 343 78.7
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 2.4e-159 565.8 362 74.6
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 3.2e-159 565.5 378 72.8
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 4.1e-159 565.1 371 73.3
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.1e-159 565.1 371 73.3
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 7.0e-159 564.3 364 74.5
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 7.0e-159 564.3 339 79.1
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.6e-158 563.1 343 77.3
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 2.7e-158 562.4 347 75.8
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 7.8e-158 560.8 350 76.6
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.9e-157 558.5 339 78.2
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 3.9e-157 558.5 381 70.3
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 5.0e-157 558.1 377 70.3
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.9e-156 556.2 344 76.2
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 3.3e-156 555.4 360 73.3
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 5.6e-156 554.7 363 74.1
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 9.5e-156 553.9 380 69.5
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.2e-155 553.5 364 73.4
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 8.1e-155 550.8 391 68.0
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 3.1e-154 548.9 363 70.5
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 5.2e-154 548.1 380 68.7
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 5.2e-154 548.1 378 71.7
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 6.8e-154 547.7 362 72.4
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.0e-153 546.2 380 71.1
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.4e-153 545.4 377 68.2
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.3e-152 543.5 340 75.6
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 2.2e-152 542.7 372 70.2
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 7.1e-151 537.7 382 72.0
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.6e-150 536.6 355 71.8
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.6e-150 536.6 378 66.7
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 1.6e-150 536.6 385 67.3
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 3.5e-150 535.4 387 65.6
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 4.6e-150 535.0 378 66.7
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.3e-149 533.5 355 71.8
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.7e-149 533.1 321 76.3
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 2.3e-149 532.7 340 73.2
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 3.0e-149 532.3 387 67.4
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 5.1e-149 531.6 356 71.1
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.1e-148 530.4 382 65.4
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 2.5e-148 529.3 390 65.4
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 5.6e-148 528.1 342 74.0
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 9.5e-148 527.3 390 64.9
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.8e-147 525.8 369 69.4
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 6.2e-147 524.6 334 72.2
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 6.2e-147 524.6 364 68.4
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.1e-146 523.9 364 68.7
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.4e-146 523.5 392 66.1
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 4.0e-146 521.9 380 66.1
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.2e-145 520.4 388 66.2
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.2e-145 520.4 360 67.8
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.5e-145 520.0 343 72.6
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.9e-143 513.1 363 66.7
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 4.1e-143 511.9 367 67.8
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.6e-142 510.0 330 73.9
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 2.7e-142 509.2 371 67.7
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.5e-142 508.8 310 75.5
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.0e-141 507.3 345 68.4
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 3.0e-141 505.8 367 65.7
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 5.1e-141 505.0 307 75.6
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.1e-140 503.8 374 66.0
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 1.1e-140 503.8 361 65.9
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.9e-140 503.1 367 65.4
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 9.6e-140 500.7 344 68.6
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 8.1e-139 497.7 376 64.6
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.1e-138 495.7 368 65.5
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 8.4e-136 487.6 336 69.9
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 1.5e-132 476.9 367 62.7
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 5.6e-132 474.9 379 62.5
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 1.4e-130 470.3 369 61.8
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.8e-130 469.9 348 65.5
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 1.2e-126 457.2 382 59.7
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 1.2e-126 457.2 363 62.0
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 5.1e-125 451.8 322 66.5
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.8e-122 443.4 342 61.7
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.5e-121 440.3 361 59.8
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.4e-120 434.9 283 72.8
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 8.4e-120 434.5 337 61.4
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.2e-118 430.6 348 60.3
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.8e-117 426.8 232 83.6
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.6e-113 412.9 305 66.2
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 4.9e-112 408.7 391 55.8
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.2e-110 404.1 327 57.2
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 4.8e-107 392.1 316 61.4
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.4e-106 390.6 378 54.5
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.9e-100 370.2 194 87.1
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 1.8e-98 363.6 207 81.6
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.1e-95 354.4 220 78.6
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 1.0e-93 347.8 177 91.5
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 2.3e-93 346.7 202 79.2
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.2e-88 330.1 289 57.8
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.2e-87 326.2 235 69.4
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 8.2e-83 311.6 228 64.9
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.7e-80 303.9 401 40.9
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.5e-72 275.0 230 59.1
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 9.4e-71 271.6 304 43.8
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.7e-70 269.2 233 59.7
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 4.0e-69 266.2 345 39.7
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.7e-64 250.8 222 56.3
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 6.8e-61 238.8 373 37.3
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 4.5e-57 226.1 198 57.6
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 4.7e-54 216.1 351 37.0
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.9e-48 196.4 125 76.0
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.2e-35 154.1 148 54.1
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 4.6e-33 146.4 142 55.6
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.5e-31 138.7 116 62.9
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.9e-24 116.7 65 80.0
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.1e-21 108.6 57 86.0
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 8.1e-06 55.8 43 62.8


User provided reference genes

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