Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02376 Brassica carinata HOM05D004916 ORTHO05D006147 5.1e-134 481.1 245 100.0
Thhalv10028918m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 1.3e-110 403.3 246 85.0
Sp6g01560 Schrenkiella parvula HOM05D004916 ORTHO05D006147 4.0e-107 391.7 246 82.9
A03p31520 Brassica napus HOM05D004916 ORTHO05D006147 5.3e-107 391.3 241 84.6
BraA03t12331Z Brassica rapa HOM05D004916 ORTHO05D006147 5.3e-107 391.3 241 84.6
BcaC01g06807 Brassica carinata HOM05D004916 ORTHO05D006147 1.2e-106 390.2 241 84.6
BolC3t16124H Brassica oleracea HOM05D004916 ORTHO05D006147 1.2e-106 390.2 241 84.6
C03p38500 Brassica napus HOM05D004916 ORTHO05D006147 4.5e-106 388.3 242 84.7
A09p01200 Brassica napus HOM05D004916 ORTHO05D006147 8.5e-97 357.5 246 78.0
BraA09t35790Z Brassica rapa HOM05D004916 ORTHO05D006147 8.5e-97 357.5 246 78.0
AT4G01670 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 1.0e-94 350.5 256 77.7
C09p01290 Brassica napus HOM05D004916 ORTHO05D006147 2.5e-93 345.9 240 76.2
AL6G51680 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 7.4e-93 344.4 252 77.0
Carub.0006s3554 Capsella rubella HOM05D004916 ORTHO05D006147 9.7e-93 344.0 253 77.5
BcaC04g24078 Brassica carinata HOM05D004916 ORTHO05D006147 8.2e-92 340.9 239 75.7
BolC9t53063H Brassica oleracea HOM05D004916 ORTHO05D006147 9.1e-91 337.4 245 76.3
CARHR250000 Cardamine hirsuta HOM05D004916 ORTHO05D006147 1.4e-88 330.1 244 75.4
Aa31LG5G1380 Aethionema arabicum HOM05D004916 ORTHO05D006147 3.5e-74 282.3 259 65.3
THA.LOC104815913 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 4.7e-63 245.4 272 60.7
THA.LOC104825924 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 3.2e-56 222.6 260 55.8
Manes.01G235900 Manihot esculenta HOM05D004916 ORTHO05D006147 2.0e-37 160.2 250 44.0
Manes.05G007300 Manihot esculenta HOM05D004916 ORTHO05D006147 5.8e-37 158.7 259 43.6
Potri.014G111000 Populus trichocarpa HOM05D004916 ORTHO05D006147 1.7e-36 157.1 292 40.4
Sabra14G0081700 Salix brachista HOM05D004916 ORTHO05D006147 3.7e-36 156.0 292 40.4
Eucgr.A00995 Eucalyptus grandis HOM05D004916 ORTHO05D006147 4.9e-36 155.6 232 46.6
Cpa.g.sc57.33 Carica papaya HOM05D004916 ORTHO05D006147 2.4e-35 153.3 250 46.0
Lj1g0011620 Lotus japonicus HOM05D004916 ORTHO05D006147 3.5e-34 149.4 272 41.5
Duzib138G0475 Durio zibethinus HOM05D004916 ORTHO05D006147 1.0e-33 147.9 291 40.9
Ca_09253_v3 Cicer arietinum L. HOM05D004916 ORTHO05D006147 2.3e-33 146.7 264 42.4
Thecc.01G327100 Theobroma cacao HOM05D004916 ORTHO05D006147 2.3e-33 146.7 295 40.3
Duzib133G0180 Durio zibethinus HOM05D004916 ORTHO05D006147 3.9e-33 146.0 293 40.3
Gorai.007G118300 Gossypium raimondii HOM05D004916 ORTHO05D006147 5.0e-33 145.6 293 41.6
TPR.G8393 Trifolium pratense HOM05D004916 ORTHO05D006147 6.6e-33 145.2 233 42.1
TAR636G0286 Trochodendron aralioides HOM05D004916 ORTHO05D006147 8.6e-33 144.8 247 44.9
Medtr7g110880 Medicago truncatula HOM05D004916 ORTHO05D006147 1.5e-32 144.1 285 39.3
Potri.002G185700 Populus trichocarpa HOM05D004916 ORTHO05D006147 1.5e-32 144.1 261 43.3
Ciclev10021551m.g Citrus clementina HOM05D004916 ORTHO05D006147 1.9e-32 143.7 284 41.5
PSO210G3767 Papaver somniferum HOM05D004916 ORTHO05D006147 9.5e-32 141.4 231 44.6
TAR362G0875 Trochodendron aralioides HOM05D004916 ORTHO05D006147 9.5e-32 141.4 184 48.9
PSO761G0152 Papaver somniferum HOM05D004916 ORTHO05D006147 1.2e-31 141.0 231 44.6
TWI23G0103 Tripterygium wilfordii HOM05D004916 ORTHO05D006147 2.1e-31 140.2 206 48.1
QL12p035219 Quercus lobata HOM05D004916 ORTHO05D006147 2.8e-31 139.8 246 43.1
Gohir.A12G119000 Gossypium hirsutum HOM05D004916 ORTHO05D006147 3.6e-31 139.4 274 41.2
Gohir.D11G110600 Gossypium hirsutum HOM05D004916 ORTHO05D006147 3.6e-31 139.4 293 41.0
Cfa004923 Carpinus fangiana HOM05D004916 ORTHO05D006147 1.1e-30 137.9 268 41.4
COL.COLO4_23106 Corchorus olitorius HOM05D004916 ORTHO05D006147 1.1e-30 137.9 307 39.7
Atru.chr5.842 Acer truncatum HOM05D004916 ORTHO05D006147 1.4e-30 137.5 249 41.8
CiPaw.08G082200 Carya illinoinensis HOM05D004916 ORTHO05D006147 1.4e-30 137.5 322 37.0
Gohir.D12G122800 Gossypium hirsutum HOM05D004916 ORTHO05D006147 1.8e-30 137.1 274 40.9
Gorai.008G133600 Gossypium raimondii HOM05D004916 ORTHO05D006147 1.8e-30 137.1 274 40.9
TAR362G0057 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.8e-30 137.1 252 42.1
Sabra02G0148800 Salix brachista HOM05D004916 ORTHO05D006147 2.3e-30 136.7 227 45.8
TAR553G0002 Trochodendron aralioides HOM05D004916 ORTHO05D006147 2.3e-30 136.7 285 41.1
PGR042G3904 Punica granatum HOM05D004916 ORTHO05D006147 3.1e-30 136.3 256 42.6
Haze_05162 Corylus avellana HOM05D004916 ORTHO05D006147 6.8e-30 135.2 316 38.9
Nn4g25313 Nelumbo nucifera HOM05D004916 ORTHO05D006147 6.8e-30 135.2 265 41.5
Gohir.A11G105700 Gossypium hirsutum HOM05D004916 ORTHO05D006147 8.9e-30 134.8 289 39.8
TAR365G1046 Trochodendron aralioides HOM05D004916 ORTHO05D006147 8.9e-30 134.8 286 40.6
Psat3g016360 Pisum sativum HOM05D004916 ORTHO05D006147 7.5e-29 131.7 256 41.4
CiPaw.07G126700 Carya illinoinensis HOM05D004916 ORTHO05D006147 1.3e-28 131.0 260 40.0
TAR633G1842 Trochodendron aralioides HOM05D004916 ORTHO05D006147 6.4e-28 128.6 231 43.7
Gorai.001G148600 Gossypium raimondii HOM05D004916 ORTHO05D006147 8.3e-28 128.3 278 39.6
Lalb_Chr18g0046341 Lupinus albus HOM05D004916 ORTHO05D006147 8.3e-28 128.3 289 38.1
Carub.0005s2882 Capsella rubella HOM05D004916 ORTHO05D006147 1.1e-27 127.9 269 41.6
Glyma.03G225300 Glycine max HOM05D004916 ORTHO05D006147 1.1e-27 127.9 257 40.1
Gohir.A07G132300 Gossypium hirsutum HOM05D004916 ORTHO05D006147 2.4e-27 126.7 282 39.4
Sp5g01300 Schrenkiella parvula HOM05D004916 ORTHO05D006147 2.4e-27 126.7 276 40.9
AL5G44750 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 3.2e-27 126.3 269 41.6
TWI14G0993 Tripterygium wilfordii HOM05D004916 ORTHO05D006147 3.2e-27 126.3 293 38.2
AT3G62070 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 9.2e-27 124.8 267 42.7
Glyma.19G222300 Glycine max HOM05D004916 ORTHO05D006147 9.2e-27 124.8 235 40.0
GSVIVG01028232001 Vitis vinifera HOM05D004916 ORTHO05D006147 2.1e-26 123.6 98 64.3
A09p54150 Brassica napus HOM05D004916 ORTHO05D006147 2.7e-26 123.2 252 41.3
Gohir.D07G136500 Gossypium hirsutum HOM05D004916 ORTHO05D006147 2.7e-26 123.2 284 37.7
Thhalv10006193m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 3.5e-26 122.9 268 42.2
Prupe.3G001400 Prunus persica HOM05D004916 ORTHO05D006147 1.0e-25 121.3 242 40.1
CSS0009622 Camellia sinensis var. sinensis HOM05D004916 ORTHO05D006147 2.3e-25 120.2 271 37.6
Lalb_Chr15g0077851 Lupinus albus HOM05D004916 ORTHO05D006147 3.9e-25 119.4 223 41.3
VMungo1383G1740 Vigna mungo HOM05D004916 ORTHO05D006147 5.1e-25 119.0 248 37.5
C08p37030 Brassica napus HOM05D004916 ORTHO05D006147 6.6e-25 118.6 263 41.1
BolC8t51280H Brassica oleracea HOM05D004916 ORTHO05D006147 8.6e-25 118.2 263 40.7
Phvul.001G219100 Phaseolus vulgaris HOM05D004916 ORTHO05D006147 1.5e-24 117.5 277 36.5
BraA09t40829Z Brassica rapa HOM05D004916 ORTHO05D006147 2.5e-24 116.7 269 40.9
MD00G1137300 Malus domestica HOM05D004916 ORTHO05D006147 4.3e-24 115.9 329 34.7
THA.LOC104827649 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 4.3e-24 115.9 263 38.8
Aqoxy5G02859 Aquilegia oxysepala HOM05D004916 ORTHO05D006147 5.6e-24 115.5 274 36.5
CSS0004254 Camellia sinensis var. sinensis HOM05D004916 ORTHO05D006147 1.6e-23 114.0 100 61.0
PSO170G5346 Papaver somniferum HOM05D004916 ORTHO05D006147 2.1e-23 113.6 233 39.1
PSO357G0289 Papaver somniferum HOM05D004916 ORTHO05D006147 2.1e-23 113.6 233 39.1
FAN19G1053 Fragaria x ananassa HOM05D004916 ORTHO05D006147 3.6e-23 112.8 279 35.1
CANSAT25G0633 Cannabis sativa HOM05D004916 ORTHO05D006147 8.1e-23 111.7 240 41.2
FvH4_1g26130 Fragaria vesca HOM05D004916 ORTHO05D006147 8.1e-23 111.7 279 35.1
FAN23G1874 Fragaria x ananassa HOM05D004916 ORTHO05D006147 8.1e-23 111.7 285 36.1
Lj5g0005115 Lotus japonicus HOM05D004916 ORTHO05D006147 1.8e-22 110.5 229 40.2
AT2G46940 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 4.0e-22 109.4 242 39.3
Carub.0004s2967 Capsella rubella HOM05D004916 ORTHO05D006147 4.0e-22 109.4 240 40.8
FAN26G2369 Fragaria x ananassa HOM05D004916 ORTHO05D006147 6.8e-22 108.6 282 35.8
RcHm_v2.0_Chr3g0485631 Rosa chinensis HOM05D004916 ORTHO05D006147 1.2e-21 107.8 241 38.2
DCAR_005711 Daucus carota HOM05D004916 ORTHO05D006147 2.0e-21 107.1 101 58.4
Aa31LG10G16040 Aethionema arabicum HOM05D004916 ORTHO05D006147 7.6e-21 105.1 229 40.6
FAN28G2008 Fragaria x ananassa HOM05D004916 ORTHO05D006147 9.9e-21 104.8 284 34.9
AL4G46410 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 3.8e-20 102.8 235 38.3
DCAR_002943 Daucus carota HOM05D004916 ORTHO05D006147 4.9e-20 102.4 100 56.0
MBI18_g03855_MAGBIO Magnolia biondii HOM05D004916 ORTHO05D006147 1.1e-19 101.3 233 36.9
BcaC01g05053 Brassica carinata HOM05D004916 ORTHO05D006147 4.1e-19 99.4 241 39.0
C03p30740 Brassica napus HOM05D004916 ORTHO05D006147 4.1e-19 99.4 241 39.0
BolC3t15423H Brassica oleracea HOM05D004916 ORTHO05D006147 5.4e-19 99.0 268 36.6
C04p01040 Brassica napus HOM05D004916 ORTHO05D006147 7.1e-19 98.6 266 36.8
BolC4t21757H Brassica oleracea HOM05D004916 ORTHO05D006147 7.1e-19 98.6 266 36.8
BcaC02g12625 Brassica carinata HOM05D004916 ORTHO05D006147 1.2e-18 97.8 266 36.5
BcaB01g03195 Brassica carinata HOM05D004916 ORTHO05D006147 2.1e-18 97.1 269 35.7
BcaC02g12821 Brassica carinata HOM05D004916 ORTHO05D006147 2.1e-18 97.1 271 34.3
BcaB01g03196 Brassica carinata HOM05D004916 ORTHO05D006147 2.7e-18 96.7 252 36.9
BcaC07g40699 Brassica carinata HOM05D004916 ORTHO05D006147 2.7e-18 96.7 236 37.7
A05p00890 Brassica napus HOM05D004916 ORTHO05D006147 3.5e-18 96.3 265 35.5
BraA05t19090Z Brassica rapa HOM05D004916 ORTHO05D006147 4.6e-18 95.9 265 35.5
CARHR142290 Cardamine hirsuta HOM05D004916 ORTHO05D006147 3.9e-17 92.8 235 36.2
Thhalv10001588m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 3.9e-17 92.8 239 36.8
arahy.Tifrunner.gnm1.ann1.Y1689U Arachis hypogaea HOM05D004916 ORTHO05D006147 5.1e-17 92.4 216 39.4
Os01g0284900 Oryza sativa ssp. japonica HOM05D004916 ORTHO05D006147 5.6e-16 89.0 223 35.9
Phvul.007G208300 Phaseolus vulgaris HOM05D004916 ORTHO05D006147 1.6e-15 87.4 252 35.7
A03p25790 Brassica napus HOM05D004916 ORTHO05D006147 2.1e-15 87.0 264 34.8
CDE11G0113 Ceratophyllum demersum HOM05D004916 ORTHO05D006147 2.1e-15 87.0 223 35.4
BraA03t11793Z Brassica rapa HOM05D004916 ORTHO05D006147 8.1e-15 85.1 264 34.1
Glyma.02G006700 Glycine max HOM05D004916 ORTHO05D006147 8.1e-15 85.1 79 60.8
Zm00001eb129480 Zea mays HOM05D004916 ORTHO05D006147 4.4e-13 79.3 178 37.1
MBI18_g28911_MAGBIO Magnolia biondii HOM05D004916 ORTHO05D006147 2.2e-12 77.0 223 34.5
CARHR172410 Cardamine hirsuta HOM05D004916 ORTHO05D006147 1.4e-11 74.3 240 35.8
Gorai.004G147700 Gossypium raimondii HOM05D004916 ORTHO05D006147 2.1e-10 70.5 231 36.8
ATR0796G037 Amborella trichopoda HOM05D004916 ORTHO05D006147 2.7e-10 70.1 250 34.8
HPP92_012762 Vanilla planifolia HOM05D004916 ORTHO05D006147 2.7e-10 70.1 138 39.9
Gohir.A08G121950 Gossypium hirsutum HOM05D004916 ORTHO05D006147 5.1e-09 65.9 152 40.1
Aa31LG1G28300 Aethionema arabicum HOM05D004916 ORTHO05D006147 8.7e-09 65.1 61 63.9
Rhsim01G0293600 Rhododendron simsii HOM05D004916 ORTHO05D006147 1.1e-08 64.7 234 32.9
Zm00001eb417630 Zea mays HOM05D004916 ORTHO05D037121 5.6e-08 62.4 84 44.0
Actinidia25874 Actinidia chinensis HOM05D004916 ORTHO05D006147 7.3e-08 62.0 199 33.2
arahy.Tifrunner.gnm1.ann1.GVI4HJ Arachis hypogaea HOM05D004916 ORTHO05D006147 1.3e-07 61.2 81 46.9
BcaC02g09022 Brassica carinata HOM05D004916 ORTHO05D006147 2.8e-07 60.1 208 31.7
BcaC02g12602 Brassica carinata HOM05D004916 ORTHO05D006147 3.6e-07 59.7 208 31.2
FvH4_1g16050 Fragaria vesca HOM05D000925 ORTHO05D002746 4.0e-06 56.2 96 40.6
FAN19G2065 Fragaria x ananassa HOM05D000925 ORTHO05D002746 4.0e-06 56.2 96 40.6
FAN26G2013 Fragaria x ananassa HOM05D000925 ORTHO05D002746 4.0e-06 56.2 96 40.6
FAN28G2874 Fragaria x ananassa HOM05D000925 ORTHO05D002746 4.0e-06 56.2 96 40.6
RcHm_v2.0_Chr2g0105661 Rosa chinensis HOM05D000925 ORTHO05D002746 9.0e-06 55.1 96 40.6


User provided reference genes

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