Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02293 Brassica carinata HOM05D002242 ORTHO05D002275 1.3e-154 549.7 280 100.0
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 4.0e-135 485.0 287 88.9
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 1.5e-134 483.0 287 88.5
BcaC04g24107 Brassica carinata HOM05D002242 ORTHO05D002275 7.6e-134 480.7 289 88.2
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 4.9e-133 478.0 287 88.2
Sp6g01185 Schrenkiella parvula HOM05D002242 ORTHO05D002275 1.9e-121 439.5 285 82.1
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 1.1e-119 433.7 287 82.9
Thhalv10028866m.g Eutrema salsugineum HOM05D002242 ORTHO05D002275 9.3e-116 420.6 290 79.7
AT4G00950 Arabidopsis thaliana HOM05D002242 ORTHO05D002275 6.9e-111 404.4 290 76.6
AL6G52440 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 1.1e-108 397.1 293 75.8
Carub.0006s3599 Capsella rubella HOM05D002242 ORTHO05D002275 3.2e-108 395.6 297 74.4
CARHR249390 Cardamine hirsuta HOM05D002242 ORTHO05D002275 3.4e-102 375.6 291 73.9
Aa31LG5G990 Aethionema arabicum HOM05D002242 ORTHO05D002275 1.7e-80 303.5 288 63.5
THA.LOC104825883 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 2.3e-66 256.5 282 56.0
THA.LOC104817057 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 2.6e-57 226.5 275 53.8
Atru.chr5.685 Acer truncatum HOM05D002242 ORTHO05D002275 7.0e-39 165.2 279 43.4
Thecc.01G340500 Theobroma cacao HOM05D002242 ORTHO05D002275 2.9e-32 143.3 289 40.5
Duzib138G1576 Durio zibethinus HOM05D002242 ORTHO05D002275 3.7e-32 142.9 285 40.0
Cpa.g.sc96.41 Carica papaya HOM05D002242 ORTHO05D002275 5.4e-31 139.0 286 40.6
Ciclev10021650m.g Citrus clementina HOM05D002242 ORTHO05D002275 2.1e-30 137.1 288 37.5
FAN01G2189 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.5e-28 130.2 283 40.6
Haze_15674 Corylus avellana HOM05D002242 ORTHO05D002275 3.3e-28 129.8 282 38.3
FAN10G2930 Fragaria x ananassa HOM05D002242 ORTHO05D002275 4.3e-28 129.4 283 40.6
CiPaw.01G077500 Carya illinoinensis HOM05D002242 ORTHO05D002275 7.3e-28 128.6 279 40.5
FAN10G3865 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.2e-27 127.9 283 40.3
Gohir.D11G102500 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.6e-27 127.5 283 36.7
Potri.002G172900 Populus trichocarpa HOM05D002242 ORTHO05D002275 4.7e-27 125.9 285 38.2
COL.COLO4_06225 Corchorus olitorius HOM05D002242 ORTHO05D002275 6.2e-27 125.6 287 39.7
FvH4_7g16850 Fragaria vesca HOM05D002242 ORTHO05D002275 2.3e-26 123.6 283 40.3
Sabra02G0140300 Salix brachista HOM05D002242 ORTHO05D002275 3.1e-26 123.2 285 37.2
Gohir.A11G097800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 6.8e-26 122.1 283 36.7
FAN03G2616 Fragaria x ananassa HOM05D002242 ORTHO05D002275 8.9e-26 121.7 280 40.0
Glyma.16G023500 Glycine max HOM05D002242 ORTHO05D002275 2.0e-25 120.6 278 35.6
Gorai.007G109600 Gossypium raimondii HOM05D002242 ORTHO05D002275 2.0e-25 120.6 253 37.9
Manes.01G244900 Manihot esculenta HOM05D002242 ORTHO05D002275 2.0e-25 120.6 290 36.9
Prupe.2G190500 Prunus persica HOM05D002242 ORTHO05D002275 1.3e-24 117.9 280 38.2
FAN06G0152 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.2e-24 117.1 289 39.4
FAN06G1161 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.7e-24 116.3 289 39.4
Gohir.A07G136800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 8.4e-24 115.2 288 36.1
MD01G1083500 Malus domestica HOM05D002242 ORTHO05D002275 1.9e-23 114.0 276 37.3
RcHm_v2.0_Chr1g0360071 Rosa chinensis HOM05D002242 ORTHO05D002275 1.2e-22 111.3 280 38.6
Manes.05G021600 Manihot esculenta HOM05D002242 ORTHO05D002275 1.6e-22 110.9 286 36.0
Sabra14G0073600 Salix brachista HOM05D002242 ORTHO05D002275 2.1e-22 110.5 262 34.7
TWI59G0079 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 4.6e-22 109.4 254 38.2
Glyma.07G054700 Glycine max HOM05D002242 ORTHO05D002275 1.7e-21 107.5 282 34.8
CANSAT56G1040 Cannabis sativa HOM05D002242 ORTHO05D002275 8.6e-21 105.1 289 36.3
Gohir.D07G142066 Gossypium hirsutum HOM05D002242 ORTHO05D002275 8.6e-21 105.1 291 34.4
MD07G1152200 Malus domestica HOM05D002242 ORTHO05D002275 3.3e-20 103.2 276 36.2
Potri.014G100200 Populus trichocarpa HOM05D002242 ORTHO05D002275 7.3e-20 102.1 276 33.3
Actinidia20250 Actinidia chinensis HOM05D002242 ORTHO05D002275 2.8e-19 100.1 289 34.3
Cc02_g39550 Coffea canephora HOM05D002242 ORTHO05D002275 1.4e-18 97.8 279 33.0
QL08p045696 Quercus lobata HOM05D002242 ORTHO05D002275 4.0e-18 96.3 287 33.8
Gorai.008G126300 Gossypium raimondii HOM05D002242 ORTHO05D002275 3.4e-17 93.2 282 35.1
Gohir.D12G116600 Gossypium hirsutum HOM05D002242 ORTHO05D002275 5.8e-17 92.4 282 35.1
Actinidia07972 Actinidia chinensis HOM05D002242 ORTHO05D002275 2.9e-16 90.1 286 33.9
TWI23G0291 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 2.9e-16 90.1 268 32.8
AUR62004507 Chenopodium quinoa HOM05D002242 ORTHO05D002275 1.4e-15 87.8 286 31.1
Hma1.2p1_0101F.1_g049310 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.9e-15 87.4 286 36.4
Nitab4.5_0010712g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 4.2e-15 86.3 282 31.2
Peaxi162Scf00345g00124 Petunia axillaris HOM05D002242 ORTHO05D002275 5.4e-15 85.9 277 28.9
Dinv34219 Davidia involucrata HOM05D002242 ORTHO05D002275 7.1e-15 85.5 283 31.4
Manes.02G144300 Manihot esculenta HOM05D002242 ORTHO05D002275 1.6e-14 84.3 270 31.9
TWI14G0218 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 2.1e-14 84.0 272 34.2
TAR636G3588 Trochodendron aralioides HOM05D002242 ORTHO05D002275 2.1e-14 84.0 267 32.6
Peaxi162Scf00087g02228 Petunia axillaris HOM05D002242 ORTHO05D002275 2.7e-14 83.6 278 31.7
DCAR_025263 Daucus carota HOM05D002242 ORTHO05D002275 3.5e-14 83.2 280 31.4
Nitab4.5_0001763g0050 Nicotiana tabacum HOM05D002242 ORTHO05D002275 7.8e-14 82.0 281 29.9
TAR425G0001 Trochodendron aralioides HOM05D002242 ORTHO05D002275 1.0e-13 81.6 241 30.7
Hund27189 Selenicereus undatus HOM05D002242 ORTHO05D002275 1.3e-13 81.3 265 31.3
Gorai.001G153800 Gossypium raimondii HOM05D002242 ORTHO05D002275 1.7e-13 80.9 271 32.8
Gohir.A12G113100 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.3e-13 80.5 283 33.2
Oeu043226.1 Olea europaea HOM05D002242 ORTHO05D002275 6.6e-13 79.0 265 29.8
MSTRG.17354 Avicennia marina HOM05D002242 ORTHO05D002275 1.1e-12 78.2 278 30.2
EL10Ac1g00249 Beta vulgaris HOM05D002242 ORTHO05D002275 1.1e-12 78.2 255 32.9
Oeu004983.1 Olea europaea HOM05D002242 ORTHO05D002275 1.9e-12 77.4 272 31.2
CAN.G1415.21 Capsicum annuum HOM05D002242 ORTHO05D002275 2.5e-12 77.0 274 27.7
CSS0021112 Camellia sinensis var. sinensis HOM05D002242 ORTHO05D002275 4.3e-12 76.3 294 29.9
DCAR_005401 Daucus carota HOM05D002242 ORTHO05D002275 5.6e-12 75.9 282 30.9
BraA10t43133Z Brassica rapa HOM05D002242 ORTHO05D002275 1.3e-11 74.7 245 30.2
Lalb_Chr10g0100621 Lupinus albus HOM05D002242 ORTHO05D002275 1.3e-11 74.7 270 30.7
Solyc01g096080.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 2.1e-11 73.9 276 28.6
Sopen01g039800 Solanum pennellii HOM05D002242 ORTHO05D002275 2.1e-11 73.9 276 28.6
Lsat_1_v5_gn_4_33660 Lactuca sativa HOM05D002242 ORTHO05D002275 2.8e-11 73.6 273 28.9
Rhsim01G0174300 Rhododendron simsii HOM05D002242 ORTHO05D002275 3.6e-11 73.2 279 29.7
arahy.Tifrunner.gnm1.ann1.QL2KDB Arachis hypogaea HOM05D002242 ORTHO05D002275 4.8e-11 72.8 287 28.6
Nn1g00284 Nelumbo nucifera HOM05D002242 ORTHO05D002275 4.8e-11 72.8 253 31.2
BcaC04g20515 Brassica carinata HOM05D002242 ORTHO05D002275 8.1e-11 72.0 245 29.8
GSVIVG01027167001 Vitis vinifera HOM05D002242 ORTHO05D002275 1.1e-10 71.6 270 31.1
Oeu060992.1 Olea europaea HOM05D002242 ORTHO05D002275 1.8e-10 70.9 262 27.9
Migut.O00897 Erythranthe guttata HOM05D002242 ORTHO05D002275 2.4e-10 70.5 283 29.0
A10p10510 Brassica napus HOM05D002242 ORTHO05D002275 4.0e-10 69.7 245 29.4
Sc01g0002560 Simmondsia chinensis HOM05D002242 ORTHO05D002275 4.0e-10 69.7 266 30.1
PGR142G4389 Punica granatum HOM05D002242 ORTHO05D002275 6.9e-10 68.9 280 27.9
Sp6g15180 Schrenkiella parvula HOM05D002242 ORTHO05D002275 6.9e-10 68.9 245 28.2
MSTRG.28269 Avicennia marina HOM05D002242 ORTHO05D002275 9.0e-10 68.6 284 29.9
QL09p008666 Quercus lobata HOM05D002242 ORTHO05D002275 2.0e-09 67.4 284 28.9
Lj3g0010764 Lotus japonicus HOM05D002242 ORTHO05D002275 2.6e-09 67.0 276 30.1
MBI06_g38007_MAGBIO Magnolia biondii HOM05D002242 ORTHO05D002275 2.6e-09 67.0 279 25.4
Actinidia28112 Actinidia chinensis HOM05D002242 ORTHO05D002275 3.4e-09 66.6 201 37.3
AL8G27650 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 3.4e-09 66.6 278 27.7
arahy.Tifrunner.gnm1.ann1.P3SJ11 Arachis hypogaea HOM05D002242 ORTHO05D002275 3.4e-09 66.6 288 28.8
Migut.N01536 Erythranthe guttata HOM05D002242 ORTHO05D002275 4.4e-09 66.2 166 34.3
Lj1g0020065 Lotus japonicus HOM05D002242 ORTHO05D002275 4.4e-09 66.2 281 30.6
Rhsim03G0209500 Rhododendron simsii HOM05D002242 ORTHO05D002275 4.4e-09 66.2 250 29.2
BcaB05g22000 Brassica carinata HOM05D002242 ORTHO05D002275 5.8e-09 65.9 251 28.7
Actinidia08657 Actinidia chinensis HOM05D002242 ORTHO05D002275 7.6e-09 65.5 286 25.9
PGSC0003DMG400000119 Solanum tuberosum HOM05D002242 ORTHO05D002275 9.9e-09 65.1 264 28.4
Dinv32603 Davidia involucrata HOM05D002242 ORTHO05D002275 1.3e-08 64.7 262 30.5
Oeu007879.1 Olea europaea HOM05D002242 ORTHO05D002275 1.3e-08 64.7 271 27.7
FAN01G0248 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.2e-08 63.9 265 27.2
Hma1.2p1_0390F.1_g142630 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 2.2e-08 63.9 267 29.6
arahy.Tifrunner.gnm1.ann1.EWV5Y4 Arachis hypogaea HOM05D002242 ORTHO05D002275 2.9e-08 63.5 210 31.9
BcaB08g35662 Brassica carinata HOM05D002242 ORTHO05D002275 3.8e-08 63.2 245 29.4
Cfa016239 Carpinus fangiana HOM05D002242 ORTHO05D002275 3.8e-08 63.2 263 28.9
FAN03G3456 Fragaria x ananassa HOM05D002242 ORTHO05D002275 4.9e-08 62.8 265 27.2
Lj4g0010373 Lotus japonicus HOM05D002242 ORTHO05D002275 6.4e-08 62.4 270 30.0
Medtr1g007905 Medicago truncatula HOM05D002242 ORTHO05D002275 6.4e-08 62.4 277 26.4
Potri.015G011900 Populus trichocarpa HOM05D002242 ORTHO05D002275 6.4e-08 62.4 250 29.2
TPR.G18779 Trifolium pratense HOM05D002242 ORTHO05D002275 6.4e-08 62.4 253 28.5
Atru.chr12.2237 Acer truncatum HOM05D002242 ORTHO05D002275 8.4e-08 62.0 268 29.5
Ca_09517_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 8.4e-08 62.0 194 32.0
Glyma.03G258400 Glycine max HOM05D002242 ORTHO05D002275 8.4e-08 62.0 198 33.8
SalBow3G1264 Salvia bowleyana HOM05D002242 ORTHO05D002275 8.4e-08 62.0 211 29.4
Sopen03g022850 Solanum pennellii HOM05D002242 ORTHO05D002275 8.4e-08 62.0 174 30.5
Nitab4.5_0003046g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 1.1e-07 61.6 117 39.3
PGSC0003DMG400007035 Solanum tuberosum HOM05D002242 ORTHO05D002275 1.1e-07 61.6 113 38.1
vmacro06390 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 1.4e-07 61.2 295 26.1
Eucgr.H01540 Eucalyptus grandis HOM05D002242 ORTHO05D002275 1.9e-07 60.8 267 31.5
Eucgr.H01594 Eucalyptus grandis HOM05D002242 ORTHO05D002275 1.9e-07 60.8 267 31.5
FvH4_7g31360 Fragaria vesca HOM05D002242 ORTHO05D002275 1.9e-07 60.8 281 27.8
FAN06G3788 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.9e-07 60.8 281 27.8
Solyc03g083050.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 1.9e-07 60.8 176 31.2
A02p11370 Brassica napus HOM05D002242 ORTHO05D002275 2.4e-07 60.5 246 28.5
Thhalv10014570m.g Eutrema salsugineum HOM05D002242 ORTHO05D002275 2.4e-07 60.5 245 28.2
Psat4g214600 Pisum sativum HOM05D002242 ORTHO05D002275 2.4e-07 60.5 111 45.0
Manes.01G184600 Manihot esculenta HOM05D002242 ORTHO05D002275 3.2e-07 60.1 269 27.1
arahy.Tifrunner.gnm1.ann1.73LR1S Arachis hypogaea HOM05D002242 ORTHO05D002275 4.2e-07 59.7 120 38.3
Nitab4.5_0004497g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 4.2e-07 59.7 113 39.8
Sabra15G0009600 Salix brachista HOM05D002242 ORTHO05D002275 4.2e-07 59.7 250 31.2
Ah.05g179410 Amaranthus hybridus HOM05D002242 ORTHO05D002275 5.4e-07 59.3 126 38.1
C09p42730 Brassica napus HOM05D002242 ORTHO05D002275 5.4e-07 59.3 250 28.0
BolC9t57149H Brassica oleracea HOM05D002242 ORTHO05D002275 5.4e-07 59.3 250 28.0
Aa31LG3G9450 Aethionema arabicum HOM05D002242 ORTHO05D002275 7.1e-07 58.9 105 40.0
Ca_12786_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 7.1e-07 58.9 270 27.8
Haze_00202 Corylus avellana HOM05D002242 ORTHO05D002275 7.1e-07 58.9 264 28.8
PSO478G1176 Papaver somniferum HOM05D002242 ORTHO05D002275 7.1e-07 58.9 241 27.4
Dinv29268 Davidia involucrata HOM05D002242 ORTHO05D002275 9.3e-07 58.5 274 28.1
Duzib084G0563 Durio zibethinus HOM05D002242 ORTHO05D002275 9.3e-07 58.5 273 28.6
Glyma.06G129800 Glycine max HOM05D002242 ORTHO05D002275 9.3e-07 58.5 271 27.3
Rhsim07G0003200 Rhododendron simsii HOM05D002242 ORTHO05D002275 1.2e-06 58.2 115 39.1
BcaC03g14465 Brassica carinata HOM05D002242 ORTHO05D002275 1.6e-06 57.8 251 27.9
Migut.B01887 Erythranthe guttata HOM05D002242 ORTHO05D002275 1.6e-06 57.8 278 28.8
Glyma.04G234700 Glycine max HOM05D002242 ORTHO05D002275 1.6e-06 57.8 243 27.2
THA.LOC104811912 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 1.6e-06 57.8 249 27.7
FAN06G4446 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.1e-06 57.4 281 27.0
Prupe.2G309000 Prunus persica HOM05D002242 ORTHO05D002275 2.1e-06 57.4 262 26.7
HanXRQChr16g0524311 Helianthus annuus HOM05D002242 ORTHO05D002275 2.7e-06 57.0 270 27.4
Psat3g001920 Pisum sativum HOM05D002242 ORTHO05D002275 2.7e-06 57.0 193 33.7
Medtr8g027435 Medicago truncatula HOM05D002242 ORTHO05D002275 3.5e-06 56.6 116 40.5
Phvul.009G051700 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 3.5e-06 56.6 271 26.6
BraA02t06201Z Brassica rapa HOM05D002242 ORTHO05D002275 4.6e-06 56.2 246 27.6
MELO3C008501.2 Cucumis melo HOM05D002242 ORTHO05D002275 4.6e-06 56.2 262 27.9
Medtr7g117695 Medicago truncatula HOM05D002242 ORTHO05D002275 4.6e-06 56.2 205 31.7
vmacro13169 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 4.6e-06 56.2 124 36.3
MSTRG.8647 Avicennia marina HOM05D002242 ORTHO05D002275 6.0e-06 55.8 97 39.2
Oeu004958.1 Olea europaea HOM05D002242 ORTHO05D002275 6.0e-06 55.8 275 29.1
RcHm_v2.0_Chr1g0380431 Rosa chinensis HOM05D002242 ORTHO05D002275 7.9e-06 55.5 145 33.8
THA.LOC104817373 Tarenaya hassleriana HOM05D010353 ORTHO05D011141 7.9e-06 55.5 271 28.0


User provided reference genes

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