Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 9.5e-65 250.0 123 100.0
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.6e-32 142.9 106 72.6
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.0e-31 138.3 107 70.1
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 4.0e-31 138.3 107 71.0
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 6.9e-31 137.5 114 65.8
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 6.9e-31 137.5 107 71.0
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.4e-30 135.2 107 69.2
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 4.5e-30 134.8 108 67.6
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 2.2e-29 132.5 105 68.6
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 2.2e-29 132.5 105 68.6
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 4.9e-29 131.3 107 67.3
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.6e-27 126.3 104 67.3
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 4.6e-27 124.8 113 64.6
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 4.6e-27 124.8 113 64.6
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 8.7e-26 120.6 117 64.1
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 3.3e-25 118.6 117 62.4
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 4.3e-25 118.2 117 63.2
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 2.4e-23 112.5 124 52.4
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 3.2e-20 102.1 97 53.6
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 7.2e-20 100.9 95 50.5
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.2e-19 100.1 102 51.0
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 3.6e-19 98.6 113 46.9
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 2.3e-18 95.9 102 50.0
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 2.3e-18 95.9 119 46.2
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 2.3e-18 95.9 89 52.8
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 3.9e-18 95.1 89 52.8
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 5.1e-18 94.7 102 49.0
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 5.1e-18 94.7 99 47.5
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 6.7e-18 94.4 89 50.6
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 8.8e-18 94.0 89 50.6
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 8.8e-18 94.0 89 51.7
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.1e-17 93.6 89 50.6
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.9e-17 92.8 88 54.5
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.9e-17 92.8 88 54.5
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 2.5e-17 92.4 102 46.1
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 3.3e-17 92.0 91 52.7
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 4.3e-17 91.7 101 46.5
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 9.7e-17 90.5 101 46.5
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 9.7e-17 90.5 115 45.2
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 9.7e-17 90.5 115 46.1
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.3e-16 90.1 89 48.3
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.7e-16 89.7 107 42.1
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 2.8e-16 89.0 97 52.6
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 2.8e-16 89.0 86 51.2
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.8e-16 89.0 99 48.5
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 3.7e-16 88.6 103 44.7
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 4.8e-16 88.2 78 59.0
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 4.8e-16 88.2 107 47.7
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 8.2e-16 87.4 104 44.2
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 8.2e-16 87.4 109 43.1
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 8.2e-16 87.4 100 48.0
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 8.2e-16 87.4 99 48.5
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.1e-15 87.0 102 44.1
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.1e-15 87.0 91 50.5
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.1e-15 87.0 91 52.7
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.1e-15 87.0 91 52.7
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 1.1e-15 87.0 102 47.1
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.8e-15 86.3 97 47.4
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.8e-15 86.3 111 41.4
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 2.4e-15 85.9 105 47.6
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 3.1e-15 85.5 108 42.6
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 3.1e-15 85.5 101 49.5
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 3.1e-15 85.5 96 47.9
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 4.1e-15 85.1 89 48.3
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 4.1e-15 85.1 101 45.5
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 6.9e-15 84.3 99 47.5
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 6.9e-15 84.3 102 46.1
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.2e-14 83.6 96 46.9
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 1.2e-14 83.6 97 48.5
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.2e-14 83.6 86 50.0
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.2e-14 83.6 86 50.0
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 1.5e-14 83.2 85 48.2
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 1.5e-14 83.2 89 47.2
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 1.5e-14 83.2 89 48.3
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 2.0e-14 82.8 90 45.6
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 2.0e-14 82.8 93 47.3
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 4.5e-14 81.6 93 45.2
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 7.7e-14 80.9 93 46.2
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.0e-13 80.5 86 51.2
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.7e-13 79.7 95 50.5
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.7e-13 79.7 97 45.4
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.2e-13 79.3 115 44.3
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 2.2e-13 79.3 96 46.9
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 2.9e-13 79.0 94 46.8
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 5.0e-13 78.2 106 38.7
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 5.0e-13 78.2 106 38.7
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 5.0e-13 78.2 93 46.2
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 5.0e-13 78.2 97 46.4
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 6.5e-13 77.8 101 45.5
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.1e-12 77.0 106 47.2
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.1e-12 77.0 90 42.2
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.4e-12 76.6 92 46.7
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.4e-12 76.6 92 46.7
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.4e-12 76.6 92 46.7
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 1.4e-12 76.6 78 51.3
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.4e-12 76.6 95 42.1
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 1.9e-12 76.3 88 45.5
BcaB01g01142 Brassica carinata HOM05D004453 ORTHO05D005375 2.5e-12 75.9 45 73.3
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 2.5e-12 75.9 89 40.4
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 3.2e-12 75.5 101 40.6
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.2e-12 75.5 92 45.7
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 3.2e-12 75.5 97 45.4
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 4.2e-12 75.1 107 40.2
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 4.2e-12 75.1 54 72.2
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.2e-12 75.1 92 45.7
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 5.5e-12 74.7 93 44.1
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 5.5e-12 74.7 93 44.1
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 5.5e-12 74.7 90 45.6
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 7.2e-12 74.3 86 44.2
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 9.4e-12 73.9 60 63.3
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 9.4e-12 73.9 88 40.9
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.2e-11 73.6 113 39.8
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.6e-11 72.0 54 68.5
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.7e-11 71.6 54 68.5
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 4.7e-11 71.6 54 66.7
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 4.7e-11 71.6 54 66.7
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 4.7e-11 71.6 54 66.7
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 7.9e-11 70.9 85 43.5
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.0e-10 70.5 54 66.7
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 1.4e-10 70.1 81 42.0
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.3e-10 69.3 100 40.0
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 3.0e-10 68.9 100 40.0
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 3.0e-10 68.9 103 41.7
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 5.1e-10 68.2 86 41.9
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 6.7e-10 67.8 89 40.4
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 6.7e-10 67.8 93 37.6
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 6.7e-10 67.8 93 37.6
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.5e-09 66.6 100 39.0
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 1.5e-09 66.6 89 39.3
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 2.0e-09 66.2 88 38.6
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 2.0e-09 66.2 90 44.4
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.4e-09 65.1 88 36.4
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.4e-09 65.1 88 36.4
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 7.4e-09 64.3 58 56.9
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 7.4e-09 64.3 84 40.5
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 9.7e-09 63.9 40 77.5
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.7e-08 63.2 99 37.4
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.7e-08 63.2 84 39.3
C01p32960 Brassica napus HOM05D000459 ORTHO05D000798 4.1e-07 58.5 38 68.4
BcaC09g49784 Brassica carinata HOM05D063838 ORTHO05D039665 7.0e-07 57.8 35 74.3
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 9.1e-07 57.4 37 75.7


User provided reference genes

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