Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 9.9e-115 416.8 206 100.0
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 4.4e-107 391.3 206 94.7
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 4.4e-107 391.3 206 94.7
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 3.2e-105 385.2 206 93.2
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 3.2e-105 385.2 206 93.2
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 1.4e-97 359.8 206 87.4
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.3e-93 346.7 208 82.7
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 5.3e-92 341.3 210 81.0
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 2.9e-90 335.5 210 79.0
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 4.2e-89 331.6 209 79.9
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 8.2e-85 317.4 210 74.3
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 4.9e-82 308.1 231 70.6
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 1.5e-78 296.6 200 72.0
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 1.5e-78 296.6 201 72.1
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 3.3e-78 295.4 188 75.0
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 4.3e-78 295.0 193 74.1
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.3e-77 293.5 197 72.6
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 8.2e-77 290.8 177 79.1
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 8.2e-77 290.8 197 71.6
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 1.4e-76 290.0 202 72.8
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 1.4e-76 290.0 202 72.8
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 1.4e-76 290.0 197 71.1
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 1.4e-76 290.0 201 71.1
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 1.8e-76 289.7 187 74.9
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 1.8e-76 289.7 199 70.9
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 2.4e-76 289.3 178 76.4
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 4.1e-76 288.5 200 70.0
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 4.5e-75 285.0 188 73.9
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 7.6e-75 284.3 199 70.9
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 1.0e-74 283.9 188 72.9
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 2.2e-74 282.7 214 67.3
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 2.2e-74 282.7 205 67.3
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 2.9e-74 282.3 178 77.0
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 2.9e-74 282.3 175 76.6
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 5.0e-74 281.6 214 66.8
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 5.0e-74 281.6 210 68.1
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 5.0e-74 281.6 177 75.7
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 6.5e-74 281.2 213 67.6
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 2.5e-73 279.3 203 67.5
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 3.2e-73 278.9 186 73.1
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 7.2e-73 277.7 191 68.6
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 2.1e-72 276.2 175 76.0
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 2.1e-72 276.2 174 74.7
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 2.7e-72 275.8 184 69.6
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 3.6e-72 275.4 203 67.5
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 6.1e-72 274.6 191 69.1
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 7.9e-72 274.2 184 71.2
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 1.0e-71 273.9 203 66.5
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.3e-71 273.5 191 68.1
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 1.8e-71 273.1 201 65.7
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.8e-71 273.1 205 64.4
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 2.3e-71 272.7 209 65.1
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 3.9e-71 271.9 188 70.7
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 5.1e-71 271.6 202 65.3
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 5.1e-71 271.6 175 72.6
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 1.9e-70 269.6 187 68.4
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 2.5e-70 269.2 176 71.0
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 9.7e-70 267.3 209 63.6
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 1.3e-69 266.9 179 70.9
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 1.6e-69 266.5 175 72.0
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 2.2e-69 266.2 176 71.0
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 8.2e-69 264.2 175 70.3
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 8.2e-69 264.2 184 67.9
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 8.2e-69 264.2 189 68.3
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 1.1e-68 263.8 175 69.1
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 1.1e-68 263.8 191 67.0
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.4e-68 263.5 200 66.0
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 2.4e-68 262.7 175 69.7
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 3.1e-68 262.3 175 69.7
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 2.0e-67 259.6 175 68.6
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 4.5e-67 258.5 177 70.6
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 7.7e-67 257.7 175 68.6
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.0e-66 257.3 199 66.3
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 1.1e-65 253.8 174 67.8
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 3.2e-65 252.3 144 80.6
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 5.5e-65 251.5 179 67.0
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 3.6e-64 248.8 176 68.2
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.4e-63 246.9 178 69.1
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 3.9e-63 245.4 232 54.3
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 1.5e-62 243.4 141 80.1
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 5.7e-62 241.5 221 63.3
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 2.2e-61 239.6 151 82.1
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 2.8e-61 239.2 141 79.4
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 2.9e-58 229.2 173 63.0
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 3.8e-58 228.8 152 75.7
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 1.1e-57 227.3 200 57.5
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 7.2e-57 224.6 197 55.8
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 1.6e-56 223.4 181 66.3
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 1.6e-56 223.4 191 60.2
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 2.7e-56 222.6 170 60.6
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 4.7e-56 221.9 159 67.3
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.4e-55 220.3 170 60.0
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 3.9e-55 218.8 170 60.6
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 9.7e-54 214.2 168 63.1
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 6.5e-50 201.4 148 67.6
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 2.5e-49 199.5 166 60.2
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 1.0e-47 194.1 164 57.9
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 4.4e-46 188.7 123 75.6
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 2.7e-43 179.5 134 67.2
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 2.5e-41 172.9 85 94.1
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 5.5e-41 171.8 120 71.7
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 7.2e-41 171.4 85 92.9
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 1.2e-40 170.6 170 56.5
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 1.4e-39 167.2 99 89.9
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 9.8e-38 161.0 184 46.2
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 6.3e-37 158.3 190 45.3
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 9.1e-36 154.5 123 61.0
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 1.9e-33 146.7 233 39.5
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 1.6e-27 127.1 175 42.3
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 3.4e-22 109.4 55 83.6
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 5.8e-22 108.6 63 87.3
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 4.1e-20 102.4 65 83.1
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 6.0e-19 98.6 112 50.0
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 3.0e-18 96.3 88 60.2
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 1.5e-17 94.0 82 56.1
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.1e-08 63.5 34 76.5
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 2.8e-08 63.2 54 59.3
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 3.6e-08 62.8 202 24.8
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 1.4e-07 60.8 188 28.2
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 6.8e-07 58.5 197 26.4
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 1.5e-06 57.4 162 28.4
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 2.6e-06 56.6 33 72.7


User provided reference genes

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