Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 6.5e-185 650.6 328 100.0
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.1e-165 586.6 331 92.4
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 2.6e-165 585.5 331 92.1
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 7.4e-165 583.9 331 92.1
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 4.1e-163 578.2 330 91.5
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 3.5e-162 575.1 343 88.9
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 5.4e-147 524.6 326 80.4
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 6.5e-145 517.7 318 84.3
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 1.1e-144 516.9 325 80.9
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.2e-141 506.9 331 80.4
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 1.4e-139 500.0 327 80.1
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 5.6e-136 488.0 321 78.5
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 1.8e-134 483.0 321 77.6
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 4.3e-128 461.8 325 74.2
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 2.4e-123 446.0 325 72.9
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 2.0e-122 443.0 326 71.8
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.5e-122 442.2 318 72.6
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 1.0e-121 440.7 318 72.3
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 2.3e-121 439.5 318 71.4
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 8.6e-121 437.6 319 72.4
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 2.5e-120 436.0 323 70.0
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 2.5e-120 436.0 317 70.7
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 4.7e-119 431.8 320 69.7
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 6.2e-119 431.4 323 68.7
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.1e-118 430.6 332 68.4
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 1.1e-118 430.6 320 70.3
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.8e-118 429.9 315 69.5
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 3.1e-118 429.1 332 68.1
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.1e-118 429.1 315 69.2
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.1e-118 429.1 315 69.2
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.0e-118 428.7 315 68.9
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 1.2e-117 427.2 324 70.4
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-117 427.2 315 69.2
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.5e-117 426.8 315 68.9
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.6e-117 426.0 315 69.2
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 3.4e-117 425.6 319 70.5
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 5.8e-117 424.9 323 67.2
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 2.2e-116 422.9 324 67.9
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 2.2e-116 422.9 328 68.6
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 3.7e-116 422.2 324 69.8
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 8.3e-116 421.0 322 68.0
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 1.1e-115 420.6 322 68.0
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 1.4e-115 420.2 328 66.8
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 2.4e-115 419.5 323 66.6
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 4.1e-115 418.7 324 69.1
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 5.4e-115 418.3 322 67.4
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 7.1e-115 417.9 329 67.5
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 9.2e-115 417.5 318 68.9
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 1.6e-114 416.8 316 68.0
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 1.6e-114 416.8 313 68.7
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 2.7e-114 416.0 324 68.2
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 2.7e-114 416.0 322 66.8
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 3.5e-114 415.6 356 63.5
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 3.5e-114 415.6 321 66.7
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 3.5e-114 415.6 325 68.3
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 4.6e-114 415.2 322 68.0
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 7.8e-114 414.5 324 66.7
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.0e-113 414.1 325 68.3
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 1.3e-113 413.7 312 69.6
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.3e-113 412.9 328 66.8
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 3.0e-113 412.5 321 67.3
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 5.1e-113 411.8 328 66.8
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 5.1e-113 411.8 317 67.2
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 1.5e-112 410.2 324 66.7
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 4.3e-112 408.7 242 85.1
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 5.6e-112 408.3 327 63.9
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 4.7e-111 405.2 320 65.9
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 8.1e-111 404.4 322 65.2
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.1e-110 404.1 328 66.8
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 1.4e-110 403.7 314 66.9
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 1.8e-110 403.3 350 62.3
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 1.8e-110 403.3 328 64.3
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 3.1e-110 402.5 318 65.1
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 3.1e-110 402.5 326 66.0
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 6.8e-110 401.4 320 66.9
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 1.2e-109 400.6 319 66.1
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 2.0e-109 399.8 317 66.2
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 7.6e-109 397.9 326 65.0
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 9.9e-109 397.5 325 64.0
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 1.3e-108 397.1 328 64.0
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.7e-108 396.7 319 63.6
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 3.2e-107 392.5 324 63.3
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 7.1e-107 391.3 313 64.9
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 7.1e-107 391.3 376 57.4
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 2.7e-106 389.4 311 64.3
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 1.3e-105 387.1 279 72.4
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 1.7e-105 386.7 324 63.3
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 3.0e-105 386.0 325 62.5
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 2.5e-104 382.9 326 63.5
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 9.6e-104 380.9 320 62.5
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.2e-103 380.6 324 63.3
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 3.1e-102 375.9 342 59.9
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 3.1e-102 375.9 263 72.2
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.7e-100 370.2 290 65.9
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.3e-97 360.5 319 59.2
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 4.3e-96 355.5 244 73.8
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 2.8e-95 352.8 315 61.0
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 9.9e-93 344.4 295 62.0
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.7e-92 343.6 282 62.4
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 4.9e-92 342.0 282 63.8
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 6.4e-92 341.7 249 70.3
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 1.9e-88 330.1 234 72.6
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 1.8e-86 323.6 313 55.9
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 3.8e-84 315.8 324 52.2
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 5.6e-80 302.0 234 66.2
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 8.1e-79 298.1 243 65.0
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.4e-78 297.4 310 54.5
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 2.6e-77 293.1 231 67.1
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 7.1e-75 285.0 244 64.8
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 1.8e-73 280.4 249 60.6
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 3.0e-73 279.6 239 61.5
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 3.1e-70 269.6 243 59.7
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 5.3e-62 242.3 191 66.5
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 4.5e-61 239.2 307 44.6
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.0e-52 211.5 189 60.8
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 1.3e-52 211.1 185 60.0
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 1.8e-46 190.7 321 40.2
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 2.2e-44 183.7 310 38.4
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 2.7e-42 176.8 134 66.4
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 5.5e-35 152.5 326 36.2
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.2e-34 151.4 133 60.2
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 4.7e-34 149.4 126 66.7
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.5e-32 144.4 109 68.8
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 5.9e-29 132.5 113 58.4
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 5.9e-29 132.5 113 58.4
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 5.9e-29 132.5 113 58.4
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 1.7e-28 131.0 112 61.6
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 6.1e-26 122.5 82 78.0
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 6.8e-25 119.0 126 53.2
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.3e-23 114.8 91 62.6
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 6.3e-23 112.5 80 73.8
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 5.4e-22 109.4 104 52.9
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-15 87.8 54 74.1
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 4.6e-13 79.7 71 54.9
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 1.1e-11 75.1 83 50.6
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 8.0e-10 68.9 58 56.9
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 1.3e-07 61.6 43 67.4
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 6.4e-07 59.3 56 55.4
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 6.4e-07 59.3 56 55.4


User provided reference genes

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