Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02155 Brassica carinata HOM05D002977 ORTHO05D003225 2.1e-225 785.4 404 100.0
A03p32000 Brassica napus HOM05D002977 ORTHO05D003225 3.5e-188 661.8 405 87.2
BcaC01g06858 Brassica carinata HOM05D002977 ORTHO05D003225 4.5e-188 661.4 408 86.8
C03p39020 Brassica napus HOM05D002977 ORTHO05D003225 8.5e-187 657.1 408 86.0
BolC3t16174H Brassica oleracea HOM05D002977 ORTHO05D003225 8.5e-187 657.1 408 86.0
BraA03t12372Z Brassica rapa HOM05D002977 ORTHO05D003225 5.7e-183 644.4 405 85.9
Sp6g00770 Schrenkiella parvula HOM05D002977 ORTHO05D003225 5.0e-163 578.2 432 76.9
Thhalv10029270m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 3.5e-156 555.4 431 73.5
Carub.0006s3643 Capsella rubella HOM05D002977 ORTHO05D003225 1.9e-146 523.1 429 70.9
AL6G52680 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 2.1e-145 519.6 433 70.4
AT4G00770 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 2.2e-142 509.6 430 69.3
CARHR248960 Cardamine hirsuta HOM05D002977 ORTHO05D003225 2.5e-138 496.1 434 67.5
Aa31LG5G240 Aethionema arabicum HOM05D002977 ORTHO05D003225 3.2e-117 426.0 479 58.0
THA.LOC104801463 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 1.2e-100 370.9 449 55.5
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 2.6e-50 203.8 452 37.8
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 2.8e-49 200.3 420 40.7
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 2.8e-49 200.3 435 41.1
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 2.4e-48 197.2 442 36.7
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 1.6e-47 194.5 445 38.2
MD01G1047600 Malus domestica HOM05D002977 ORTHO05D003225 7.3e-45 185.7 465 36.8
TWI59G0633 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 2.8e-44 183.7 446 38.6
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 3.6e-44 183.3 465 36.3
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 4.7e-44 183.0 471 35.5
MD07G1125600 Malus domestica HOM05D002977 ORTHO05D003225 2.6e-42 177.2 471 35.9
Haze_15232 Corylus avellana HOM05D002977 ORTHO05D003225 2.4e-40 170.6 420 38.8
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 9.2e-40 168.7 482 34.4
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 2.7e-39 167.2 436 36.2
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 1.0e-38 165.2 438 37.4
FAN06G3334 Fragaria x ananassa HOM05D002977 ORTHO05D003225 5.0e-38 162.9 437 36.2
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 6.6e-38 162.5 437 35.2
Potri.014G077400 Populus trichocarpa HOM05D002977 ORTHO05D003225 8.6e-38 162.2 468 34.4
Cfa004177 Carpinus fangiana HOM05D002977 ORTHO05D003225 3.3e-37 160.2 421 37.5
Glyma.07G079500 Glycine max HOM05D002977 ORTHO05D003225 5.6e-37 159.5 428 34.6
Sabra14G0054900 Salix brachista HOM05D002977 ORTHO05D003225 9.5e-37 158.7 467 35.1
FvH4_7g12980 Fragaria vesca HOM05D002977 ORTHO05D003225 4.7e-36 156.4 440 35.9
FAN06G4128 Fragaria x ananassa HOM05D002977 ORTHO05D003225 4.0e-35 153.3 446 35.9
VMungo0331G1467 Vigna mungo HOM05D002977 ORTHO05D003225 4.0e-35 153.3 426 32.9
Glyma.03G017800 Glycine max HOM05D002977 ORTHO05D003225 1.7e-33 147.9 433 32.8
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 8.3e-33 145.6 434 33.9
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 8.3e-33 145.6 465 35.3
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 1.2e-31 141.7 415 33.0
Gohir.D08G150500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.1e-31 141.0 431 31.8
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 3.5e-31 140.2 434 33.6
Gorai.004G156200 Gossypium raimondii HOM05D002977 ORTHO05D003225 6.0e-31 139.4 431 31.8
Gohir.A08G129200 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.0e-30 138.7 431 32.5
Phvul.010G089700 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 1.0e-30 138.7 340 36.5
FAN01G0110 Fragaria x ananassa HOM05D002977 ORTHO05D003225 2.3e-30 137.5 457 32.4
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 3.0e-30 137.1 493 32.7
CANSAT56G0238 Cannabis sativa HOM05D002977 ORTHO05D003225 3.9e-30 136.7 449 32.5
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 4.3e-29 133.3 461 33.0
Ca_23758_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 6.2e-28 129.4 431 31.1
Medtr8g032770 Medicago truncatula HOM05D002977 ORTHO05D003225 6.8e-27 125.9 442 31.7
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 8.9e-27 125.6 462 33.8
Lalb_Chr10g0097561 Lupinus albus HOM05D002977 ORTHO05D003225 8.9e-27 125.6 425 31.3
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 1.5e-26 124.8 457 30.4
Psat4g151680 Pisum sativum HOM05D002977 ORTHO05D003225 5.8e-26 122.9 434 31.1
Lj3g0026127 Lotus japonicus HOM05D002977 ORTHO05D003225 7.5e-26 122.5 430 32.3
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 1.7e-25 121.3 471 31.8
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 2.2e-25 120.9 479 29.4
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 1.4e-24 118.2 435 33.1
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 1.4e-24 118.2 426 32.4
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.9e-24 117.9 426 31.2
arahy.Tifrunner.gnm1.ann1.XNH79U Arachis hypogaea HOM05D002977 ORTHO05D003225 2.4e-24 117.5 446 29.4
arahy.Tifrunner.gnm1.ann1.YQQF81 Arachis hypogaea HOM05D002977 ORTHO05D003225 2.4e-24 117.5 446 29.1
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 9.2e-24 115.5 484 31.4
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 1.6e-23 114.8 420 33.1
Lsat_1_v5_gn_7_8261 Lactuca sativa HOM05D002977 ORTHO05D003225 4.6e-23 113.2 421 30.9
Oeu059228.1 Olea europaea HOM05D002977 ORTHO05D003225 7.8e-23 112.5 411 32.1
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 1.0e-22 112.1 468 30.6
Oeu059227.1 Olea europaea HOM05D002977 ORTHO05D003225 1.3e-22 111.7 409 32.0
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 1.7e-22 111.3 394 32.7
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 2.3e-22 110.9 461 29.1
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 3.0e-22 110.5 434 30.0
Manes.05G040400 Manihot esculenta HOM05D002977 ORTHO05D003225 6.6e-22 109.4 442 30.8
CAN.G170.54 Capsicum annuum HOM05D002977 ORTHO05D003225 2.5e-21 107.5 449 30.3
A02p24230 Brassica napus HOM05D002977 ORTHO05D040183 3.3e-21 107.1 120 61.7
Manes.01G262800 Manihot esculenta HOM05D002977 ORTHO05D003225 4.3e-21 106.7 421 30.6
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 4.3e-21 106.7 433 30.0
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 2.1e-20 104.4 479 29.4
TWI14G0163 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 3.6e-20 103.6 436 30.3
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 4.7e-20 103.2 479 29.9
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 1.1e-19 102.1 429 29.6
Duzib133G0091 Durio zibethinus HOM05D002977 ORTHO05D003225 2.4e-19 100.9 225 33.3
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 3.1e-19 100.5 465 27.3
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 4.0e-19 100.1 448 29.0
Nitab4.5_0000134g0230 Nicotiana tabacum HOM05D002977 ORTHO05D003225 4.0e-19 100.1 431 31.1
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 3.4e-18 97.1 451 30.2
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 7.6e-18 95.9 470 28.7
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 7.6e-18 95.9 484 30.4
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 9.9e-18 95.5 475 26.7
HanXRQChr06g0168991 Helianthus annuus HOM05D002977 ORTHO05D003225 1.3e-17 95.1 343 30.9
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 1.3e-17 95.1 496 29.6
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.7e-17 94.7 444 27.3
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 2.9e-17 94.0 466 29.4
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 3.8e-17 93.6 465 27.3
MSTRG.20788 Avicennia marina HOM05D002977 ORTHO05D003225 4.9e-17 93.2 402 31.8
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 4.9e-17 93.2 464 28.4
Oeu024421.1 Olea europaea HOM05D002977 ORTHO05D003225 1.1e-16 92.0 414 31.4
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 1.4e-16 91.7 465 26.2
Cc02_g37200 Coffea canephora HOM05D002977 ORTHO05D003225 1.9e-16 91.3 429 28.7
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 3.2e-16 90.5 481 29.9
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 5.4e-16 89.7 428 30.8
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 1.2e-15 88.6 465 29.2
Oeu024422.1 Olea europaea HOM05D002977 ORTHO05D003225 1.2e-15 88.6 416 31.2
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 1.6e-15 88.2 484 29.5
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.6e-15 88.2 459 29.2
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 6.0e-15 86.3 485 28.9
Actinidia14518 Actinidia chinensis HOM05D000078 ORTHO05D003225 1.0e-14 85.5 317 32.2
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 1.0e-14 85.5 454 28.9
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 1.3e-14 85.1 482 27.6
DCAR_008585 Daucus carota HOM05D002977 ORTHO05D003225 1.3e-14 85.1 404 30.0
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.3e-14 85.1 494 28.3
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.3e-14 85.1 465 26.7
Ah.16g108930 Amaranthus hybridus HOM05D002977 ORTHO05D003225 1.7e-14 84.7 300 33.3
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 1.7e-14 84.7 480 27.3
Nitab4.5_0004550g0040 Nicotiana tabacum HOM05D002977 ORTHO05D003225 5.1e-14 83.2 446 29.6
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 1.5e-13 81.6 493 27.8
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.9e-13 81.3 481 28.3
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 3.3e-13 80.5 452 29.4
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 7.3e-13 79.3 473 29.0
Nitab4.5_0003356g0060 Nicotiana tabacum HOM05D002977 ORTHO05D003225 9.6e-13 79.0 423 29.3
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.2e-12 78.6 507 26.6
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 1.2e-12 78.6 475 25.7
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 2.1e-12 77.8 502 27.7
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 2.1e-12 77.8 471 26.8
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 3.6e-12 77.0 460 27.6
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 3.6e-12 77.0 486 27.2
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 4.7e-12 76.6 466 26.2
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 6.2e-12 76.3 482 25.7
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 1.1e-11 75.5 446 27.8
EL10Ac1g00967 Beta vulgaris HOM05D002977 ORTHO05D003225 1.8e-11 74.7 307 30.6
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.8e-11 74.7 366 26.2
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.4e-11 74.3 502 28.3
Hund16963 Selenicereus undatus HOM05D002977 ORTHO05D003225 3.1e-11 73.9 313 28.4
CiPaw.02G024700 Carya illinoinensis HOM05D002977 ORTHO05D003225 5.3e-11 73.2 227 33.0
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 5.3e-11 73.2 469 26.4
PGR042G2435 Punica granatum HOM05D002977 ORTHO05D003225 6.9e-11 72.8 451 28.2
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 3.4e-10 70.5 356 29.2
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 3.4e-10 70.5 449 27.4
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 3.4e-10 70.5 437 25.9
Nitab4.5_0010430g0070 Nicotiana tabacum HOM05D002977 ORTHO05D003225 9.9e-10 68.9 199 36.7
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 9.9e-10 68.9 415 25.3
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 2.9e-09 67.4 467 25.9
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 3.8e-09 67.0 419 26.7
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 3.8e-09 67.0 419 26.7
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 6.4e-09 66.2 435 26.0
Migut.B01683 Erythranthe guttata HOM05D002977 ORTHO05D003225 1.1e-08 65.5 344 28.8
Aa31LG9G10650 Aethionema arabicum HOM05D002977 ORTHO05D003225 1.4e-08 65.1 457 25.6
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 1.4e-08 65.1 423 25.3
Sp7g21110 Schrenkiella parvula HOM05D002977 ORTHO05D003225 1.4e-08 65.1 461 26.7
MELO3C006152.2 Cucumis melo HOM05D002977 ORTHO05D003225 3.2e-08 63.9 240 32.9
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 4.2e-08 63.5 202 29.2
GSVIVG01019863001 Vitis vinifera HOM05D002977 ORTHO05D003225 4.2e-08 63.5 193 34.2
AUR62033369 Chenopodium quinoa HOM05D049868 ORTHO05D003225 9.3e-08 62.4 286 31.1
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 9.3e-08 62.4 450 27.8
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 9.3e-08 62.4 489 25.2
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 1.6e-07 61.6 471 25.9
Glyma.17G132000 Glycine max HOM05D002977 ORTHO05D003225 1.6e-07 61.6 458 26.2
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 2.1e-07 61.2 459 24.6
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.1e-07 61.2 503 26.4
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 2.7e-07 60.8 455 25.3
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.7e-07 60.8 450 27.1
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 2.7e-07 60.8 449 27.6
BolC2t09827H Brassica oleracea HOM05D002977 ORTHO05D040183 3.5e-07 60.5 51 72.5
CsaV3_3G009320 Cucumis sativus L. HOM05D002977 ORTHO05D003225 3.5e-07 60.5 245 32.2
MD04G1068300 Malus domestica HOM05D002977 ORTHO05D003225 3.5e-07 60.5 240 30.8
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 7.8e-07 59.3 466 24.9
SalBow3G1388 Salvia bowleyana HOM05D002977 ORTHO05D003225 7.8e-07 59.3 413 25.9
Thhalv10025169m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 1.3e-06 58.5 447 24.4
DCAR_006904 Daucus carota HOM05D002977 ORTHO05D003225 3.0e-06 57.4 397 26.4
ATR0757G071 Amborella trichopoda HOM05D003485 ORTHO05D004004 3.9e-06 57.0 377 26.5
Lj2A196T48 Lonicera japonica HOM05D002977 ORTHO05D003225 3.9e-06 57.0 345 29.6
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 6.6e-06 56.2 291 27.5


User provided reference genes

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