Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 1.3e-140 503.1 262 100.0
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 8.1e-138 493.8 262 98.1
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 8.1e-138 493.8 262 98.1
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 2.4e-137 492.3 262 97.7
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 1.3e-132 476.5 262 95.4
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.7e-132 476.1 262 94.7
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 7.3e-131 470.7 266 93.6
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 1.1e-129 466.8 265 92.1
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 2.4e-129 465.7 266 92.5
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 3.4e-128 461.8 265 90.9
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 8.4e-127 457.2 261 90.8
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 3.5e-125 451.8 247 96.0
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 4.6e-125 451.4 269 88.8
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 1.0e-124 450.3 247 95.5
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.5e-120 436.4 247 93.9
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.5e-120 436.4 247 93.9
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 2.9e-111 405.6 245 86.5
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 1.4e-110 403.3 271 76.8
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 1.1e-105 387.1 271 74.5
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 3.4e-104 382.1 269 73.2
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 2.9e-103 379.0 272 73.5
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 8.4e-103 377.5 267 71.5
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 2.7e-101 372.5 267 70.0
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 1.0e-100 370.5 267 71.9
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 1.8e-100 369.8 266 72.6
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 2.3e-100 369.4 270 72.6
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 5.1e-100 368.2 267 71.5
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 5.1e-100 368.2 269 71.4
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 8.7e-100 367.5 265 71.3
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 1.5e-99 366.7 266 72.2
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 1.9e-99 366.3 266 71.1
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 3.3e-99 365.5 266 72.9
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 4.3e-99 365.2 268 73.5
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 4.3e-99 365.2 269 70.6
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 7.4e-99 364.4 265 69.4
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 4.8e-98 361.7 263 71.9
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 6.3e-98 361.3 268 69.8
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 6.3e-98 361.3 261 72.8
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 6.3e-98 361.3 261 72.8
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 8.2e-98 360.9 269 70.6
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-97 360.5 259 72.6
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 1.1e-97 360.5 266 71.8
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 1.4e-97 360.1 261 72.4
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.1e-97 359.0 259 72.2
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.1e-97 359.0 259 72.2
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.1e-97 358.6 267 70.4
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 4.1e-97 358.6 266 69.9
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 6.9e-97 357.8 264 70.8
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 1.2e-96 357.1 259 71.8
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 1.5e-96 356.7 267 70.8
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 2.0e-96 356.3 197 95.4
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 2.0e-96 356.3 197 95.4
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.4e-96 355.5 264 70.5
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 5.9e-96 354.8 265 72.8
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 1.3e-95 353.6 261 69.7
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.7e-95 353.2 270 70.0
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 1.7e-95 353.2 270 70.0
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 1.7e-95 353.2 267 68.5
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 2.9e-95 352.4 261 69.7
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.9e-95 352.4 264 70.1
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 3.8e-95 352.1 272 68.4
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 3.8e-95 352.1 274 68.6
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 5.0e-95 351.7 260 69.6
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 6.5e-95 351.3 272 70.2
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 8.5e-95 350.9 268 66.8
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 8.5e-95 350.9 263 68.1
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 1.4e-94 350.1 270 66.3
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 1.4e-94 350.1 274 67.9
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 1.4e-94 350.1 263 69.2
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 1.4e-94 350.1 264 71.2
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 1.9e-94 349.7 267 67.8
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 4.2e-94 348.6 266 68.8
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 5.5e-94 348.2 265 69.1
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.2e-93 347.1 265 68.3
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 3.6e-93 345.5 266 69.9
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 4.6e-93 345.1 263 68.4
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 1.0e-92 344.0 268 69.4
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 1.4e-92 343.6 261 67.8
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 1.8e-92 343.2 268 70.1
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 3.9e-92 342.0 263 67.7
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 5.1e-92 341.7 266 66.9
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 1.1e-91 340.5 265 67.5
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 1.5e-91 340.1 272 65.8
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 2.0e-91 339.7 270 67.0
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 4.3e-91 338.6 264 65.2
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 7.4e-91 337.8 266 66.2
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.7e-90 336.7 259 68.7
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 8.2e-90 334.3 262 68.3
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 4.1e-89 332.0 258 67.4
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 6.9e-89 331.3 262 66.8
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.2e-88 330.5 268 64.9
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.5e-88 330.1 221 73.3
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.5e-88 330.1 265 64.2
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 8.5e-87 324.3 256 66.8
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 1.4e-86 323.6 266 62.4
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 4.2e-86 322.0 237 68.4
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 6.7e-84 314.7 303 57.4
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 6.3e-82 308.1 266 62.4
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 1.8e-81 306.6 238 68.9
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 4.1e-81 305.4 223 67.7
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 5.3e-81 305.1 211 72.0
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 2.7e-77 292.7 259 61.4
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 9.7e-75 284.3 224 62.5
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 1.8e-73 280.0 225 61.8
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 1.8e-73 280.0 184 73.9
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 7.0e-73 278.1 190 74.7
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 1.3e-71 273.9 265 56.6
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 7.2e-70 268.1 244 55.3
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 3.0e-68 262.7 217 57.1
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 8.8e-68 261.2 231 56.3
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 9.7e-67 257.7 237 58.2
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.3e-66 257.3 180 65.6
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 4.8e-66 255.4 214 58.4
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 5.3e-65 251.9 225 59.6
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 5.5e-62 241.9 262 58.8
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 5.5e-62 241.9 262 58.8
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 1.6e-61 240.4 262 58.4
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 3.7e-58 229.2 174 71.3
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 5.7e-51 205.3 141 67.4
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 1.0e-47 194.5 132 74.2
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 1.2e-43 181.0 153 52.9
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 1.1e-38 164.5 154 48.7
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 9.5e-38 161.4 119 70.6
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.8e-37 159.8 155 56.1
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 1.2e-35 154.5 115 65.2
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 6.8e-28 128.6 179 37.4
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 1.5e-27 127.5 98 69.4
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.0e-23 114.8 68 80.9
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.7e-18 97.4 70 67.1
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.8e-18 96.3 69 63.8
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 5.1e-15 85.9 58 69.0
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 8.7e-15 85.1 161 28.6
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 9.0e-12 75.1 60 63.3
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 7.6e-11 72.0 83 50.6
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 3.2e-09 66.6 39 79.5
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 2.5e-06 57.0 113 33.6
Cfa027004 Carpinus fangiana HOM05D001556 ORTHO05D001505 5.6e-06 55.8 124 26.6
CDE10G0560 Ceratophyllum demersum HOM05D000487 ORTHO05D001505 7.3e-06 55.5 135 25.9
Cre01.g027000 Chlamydomonas reinhardtii HOM05D001556 ORTHO05D001505 9.6e-06 55.1 129 27.9
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 9.6e-06 55.1 55 54.5


User provided reference genes

Program Settings