Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02085 Brassica carinata HOM05D001921 ORTHO05D001784 7.1e-87 323.9 168 100.0
BcaC04g24030 Brassica carinata HOM05D001921 ORTHO05D001784 1.3e-56 223.4 168 76.2
A09p01490 Brassica napus HOM05D001921 ORTHO05D001784 1.7e-56 223.0 168 76.2
BraA09t35810Z Brassica rapa HOM05D001921 ORTHO05D001784 1.7e-56 223.0 168 76.2
C09p01610 Brassica napus HOM05D001921 ORTHO05D001784 1.4e-55 219.9 168 75.0
BolC9t53094H Brassica oleracea HOM05D001921 ORTHO05D001784 2.5e-55 219.2 166 75.3
Sp6g01920 Schrenkiella parvula HOM05D001921 ORTHO05D001784 2.5e-52 209.1 164 73.2
BcaB01g02086 Brassica carinata HOM05D001921 ORTHO05D001784 1.4e-50 203.4 101 100.0
Thhalv10029029m.g Eutrema salsugineum HOM05D001921 ORTHO05D001784 5.5e-47 191.4 171 66.7
BcaC04g24029 Brassica carinata HOM05D000361 ORTHO05D004243 6.3e-43 177.9 145 73.1
CARHR249650 Cardamine hirsuta HOM05D001921 ORTHO05D001784 2.6e-41 172.6 168 59.5
Carub.0006s3519 Capsella rubella HOM05D001921 ORTHO05D001784 1.0e-40 170.6 165 60.6
AL6G51210 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 2.2e-40 169.5 164 60.4
AT4G02040 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 6.3e-35 151.4 167 57.5
BolC3t16100H Brassica oleracea HOM05D001921 ORTHO05D001784 4.1e-34 148.7 164 57.3
BcaC01g06781 Brassica carinata HOM05D001921 ORTHO05D001784 7.0e-34 147.9 164 56.7
C03p38190 Brassica napus HOM05D001921 ORTHO05D001784 7.0e-34 147.9 164 56.7
BcaB01g02407 Brassica carinata HOM05D001921 ORTHO05D001784 8.0e-30 134.4 164 54.3
BcaB01g02410 Brassica carinata HOM05D001921 ORTHO05D001784 8.0e-30 134.4 164 54.3
A03p31290 Brassica napus HOM05D001921 ORTHO05D001784 8.0e-30 134.4 166 52.4
BraA03t12309Z Brassica rapa HOM05D001921 ORTHO05D001784 1.4e-29 133.7 166 52.4
Cpa.g.sc46.103 Carica papaya HOM05D001921 ORTHO05D001784 1.4e-21 107.1 181 43.6
COL.COLO4_18732 Corchorus olitorius HOM05D001921 ORTHO05D001784 1.3e-19 100.5 180 42.2
Duzib187G0406 Durio zibethinus HOM05D001921 ORTHO05D001784 4.9e-19 98.6 178 42.1
Cfa020875 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.8e-18 96.7 171 42.1
QL02p091546 Quercus lobata HOM05D001921 ORTHO05D001784 2.0e-17 93.2 184 40.8
Manes.06G040800 Manihot esculenta HOM05D001921 ORTHO05D001784 7.7e-17 91.3 185 37.3
Haze_19306 Corylus avellana HOM05D001921 ORTHO05D001784 3.8e-16 89.0 173 39.9
FAN26G0252 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.8e-16 89.0 180 40.0
Thecc.09G037400 Theobroma cacao HOM05D001921 ORTHO05D001784 3.8e-16 89.0 179 40.8
MD15G1158100 Malus domestica HOM05D001921 ORTHO05D001784 5.0e-16 88.6 195 39.5
FvH4_1g01550 Fragaria vesca HOM05D001921 ORTHO05D001784 6.6e-16 88.2 180 40.6
Gohir.D06G096000 Gossypium hirsutum HOM05D001921 ORTHO05D001784 6.6e-16 88.2 174 43.1
CiPaw.16G117000 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.1e-15 87.4 170 40.0
Gorai.010G110700 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.1e-15 87.4 174 42.5
FAN19G1379 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.9e-15 86.7 180 40.6
THA.LOC104826571 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 1.9e-15 86.7 124 45.2
FAN23G0500 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.5e-15 86.3 179 40.2
CiPaw.15G179300 Carya illinoinensis HOM05D001921 ORTHO05D001784 9.5e-15 84.3 175 40.6
FAN28G2602 Fragaria x ananassa HOM05D001921 ORTHO05D001784 9.5e-15 84.3 180 40.0
MD02G1012300 Malus domestica HOM05D001921 ORTHO05D001784 1.2e-14 84.0 192 38.5
Dinv41418 Davidia involucrata HOM05D001921 ORTHO05D001784 2.1e-14 83.2 171 40.4
RcHm_v2.0_Chr2g0086511 Rosa chinensis HOM05D001921 ORTHO05D001784 2.1e-14 83.2 186 38.7
ClCG11G003650 Citrullus lanatus HOM05D001921 ORTHO05D001784 2.8e-14 82.8 195 36.4
TAR383G0606 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.8e-14 82.8 179 38.0
TWI34G0586 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 1.0e-13 80.9 175 38.9
Gohir.A06G095900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.4e-13 80.5 176 41.5
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 1.8e-13 80.1 181 39.8
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 1.8e-13 80.1 181 39.8
Lalb_Chr11g0072831 Lupinus albus HOM05D001921 ORTHO05D001784 1.8e-13 80.1 114 43.9
CSS0005509 Camellia sinensis var. sinensis HOM05D001921 ORTHO05D001784 4.0e-13 79.0 170 39.4
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 5.2e-13 78.6 166 38.0
Nn2g12262 Nelumbo nucifera HOM05D001921 ORTHO05D001784 6.8e-13 78.2 174 37.9
Prupe.7G253300 Prunus persica HOM05D001921 ORTHO05D001784 6.8e-13 78.2 191 36.1
Dinv03420 Davidia involucrata HOM05D001921 ORTHO05D001784 8.9e-13 77.8 143 39.9
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 1.5e-12 77.0 168 34.5
Gohir.D06G095900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.6e-12 76.3 164 39.6
Glyma.17G104300 Glycine max HOM05D001921 ORTHO05D001784 5.7e-12 75.1 173 36.4
Gorai.010G110500 Gossypium raimondii HOM05D001921 ORTHO05D001784 5.7e-12 75.1 164 39.0
Gohir.A06G095800 Gossypium hirsutum HOM05D001921 ORTHO05D001784 7.5e-12 74.7 164 40.9
Lj6g0019201 Lotus japonicus HOM05D001921 ORTHO05D001784 1.3e-11 73.9 100 46.0
Medtr4g116830 Medicago truncatula HOM05D001921 ORTHO05D001784 2.9e-11 72.8 181 36.5
PGR102G2943 Punica granatum HOM05D001921 ORTHO05D001784 2.9e-11 72.8 148 38.5
Actinidia23087 Actinidia chinensis HOM05D001921 ORTHO05D001784 3.7e-11 72.4 105 42.9
MELO3C004451.2 Cucumis melo HOM05D001921 ORTHO05D001784 3.7e-11 72.4 193 34.2
Psat1g022640 Pisum sativum HOM05D001921 ORTHO05D001784 3.7e-11 72.4 167 35.3
Rhsim03G0253600 Rhododendron simsii HOM05D001921 ORTHO05D001784 3.7e-11 72.4 169 37.9
Aqoxy7G03512 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 4.9e-11 72.0 178 35.4
Ca_03892_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 4.9e-11 72.0 164 37.2
Ca_21607_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 6.4e-11 71.6 133 40.6
Ciclev10009542m.g Citrus clementina HOM05D001921 ORTHO05D001784 8.3e-11 71.2 104 45.2
Hma1.2p1_0028F.1_g017215 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 8.3e-11 71.2 174 37.9
Phvul.003G175500 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 8.3e-11 71.2 162 39.5
TPR.G22804 Trifolium pratense HOM05D001921 ORTHO05D001784 1.1e-10 70.9 143 39.9
CsaV3_2G003470 Cucumis sativus L. HOM05D001921 ORTHO05D001784 1.4e-10 70.5 194 35.1
Hma1.2p1_2976F.1_g331170 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.4e-10 70.5 174 39.1
TAR625G0682 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.4e-10 70.5 174 33.3
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 1.8e-10 70.1 171 36.3
Medtr2g461300 Medicago truncatula HOM05D001921 ORTHO05D001784 2.4e-10 69.7 145 37.9
TAR625G1323 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.2e-10 69.3 175 32.6
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 7.0e-10 68.2 127 41.7
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 7.0e-10 68.2 163 31.9
DCAR_017895 Daucus carota HOM05D001921 ORTHO05D001784 9.2e-10 67.8 119 40.3
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 9.2e-10 67.8 144 37.5
TPR.G15777 Trifolium pratense HOM05D001921 ORTHO05D001784 1.2e-09 67.4 179 36.3
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 1.6e-09 67.0 120 40.8
CAN.G142.1 Capsicum annuum HOM05D001921 ORTHO05D001784 1.6e-09 67.0 141 37.6
Psat4g034000 Pisum sativum HOM05D001921 ORTHO05D001784 1.6e-09 67.0 183 33.9
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 2.0e-09 66.6 169 30.8
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 2.0e-09 66.6 106 42.5
Cpa.g.sc127.3 Carica papaya HOM05D001921 ORTHO05D001784 2.7e-09 66.2 172 34.9
DCAR_014829 Daucus carota HOM05D001921 ORTHO05D001784 2.7e-09 66.2 169 36.1
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 2.7e-09 66.2 168 33.9
Potri.018G022400 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.7e-09 66.2 105 41.0
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 2.7e-09 66.2 146 37.0
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.7e-09 66.2 134 38.1
VMungo1215G2840 Vigna mungo HOM05D001921 ORTHO05D001784 2.7e-09 66.2 177 36.2
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 3.5e-09 65.9 158 35.4
CANSAT11G0699 Cannabis sativa HOM05D001921 ORTHO05D001784 4.6e-09 65.5 188 31.9
CiPaw.07G227300 Carya illinoinensis HOM05D001921 ORTHO05D001784 4.6e-09 65.5 166 34.3
Glyma.13G156700 Glycine max HOM05D001921 ORTHO05D001784 4.6e-09 65.5 171 35.1
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.6e-09 65.5 151 35.1
Oeu012641.1 Olea europaea HOM05D001921 ORTHO05D001784 4.6e-09 65.5 174 33.9
Sed0017709 Sechium edule HOM05D001921 ORTHO05D001784 4.6e-09 65.5 150 35.3
Sopen08g012070 Solanum pennellii HOM05D001921 ORTHO05D001784 4.6e-09 65.5 104 38.5
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.9e-09 65.1 144 36.1
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 5.9e-09 65.1 142 36.6
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 5.9e-09 65.1 166 33.7
Sc14g0000060 Simmondsia chinensis HOM05D001921 ORTHO05D001784 5.9e-09 65.1 166 33.1
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 7.8e-09 64.7 141 36.2
AUR62011266 Chenopodium quinoa HOM05D001921 ORTHO05D001784 7.8e-09 64.7 167 38.3
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 7.8e-09 64.7 150 34.0
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 1.0e-08 64.3 165 33.3
Solyc08g041860.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 1.0e-08 64.3 102 38.2
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 1.3e-08 63.9 143 35.0
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 1.3e-08 63.9 144 37.5
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 1.3e-08 63.9 165 34.5
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.3e-08 63.9 149 34.2
Lj4g0015946 Lotus japonicus HOM05D001921 ORTHO05D001784 1.3e-08 63.9 188 34.0
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 1.7e-08 63.5 131 40.5
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.7e-08 63.5 149 32.9
TWI63G1839 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 1.7e-08 63.5 179 35.8
EL10Ac6g15007 Beta vulgaris HOM05D001921 ORTHO05D001784 2.3e-08 63.2 150 34.7
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 2.3e-08 63.2 158 33.5
TWI32G1277 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 2.3e-08 63.2 193 30.6
Gohir.D07G034600 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.0e-08 62.0 144 36.1
Prupe.1G486800 Prunus persica HOM05D001921 ORTHO05D001784 5.0e-08 62.0 168 35.7
Eucgr.C04063 Eucalyptus grandis HOM05D001921 ORTHO05D001784 6.6e-08 61.6 116 41.4
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 6.6e-08 61.6 119 37.0
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.6e-08 61.2 119 37.0
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.6e-08 61.2 119 37.0
Peaxi162Scf00116g00043 Petunia axillaris HOM05D001921 ORTHO05D001784 8.6e-08 61.2 133 36.8
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 8.6e-08 61.2 174 33.3
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.1e-07 60.8 106 39.6
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.9e-07 60.1 121 36.4
TWI63G0810 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 1.9e-07 60.1 179 32.4
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.9e-07 60.1 150 34.0
Actinidia38704 Actinidia chinensis HOM05D001921 ORTHO05D001784 3.3e-07 59.3 142 38.0
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 3.3e-07 59.3 145 37.2
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 3.3e-07 59.3 153 35.3
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 4.3e-07 58.9 125 35.2
COL.COLO4_18922 Corchorus olitorius HOM05D001921 ORTHO05D001784 5.6e-07 58.5 146 35.6
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 5.6e-07 58.5 144 36.8
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 5.6e-07 58.5 103 39.8
Gorai.001G036300 Gossypium raimondii HOM05D001921 ORTHO05D001784 5.6e-07 58.5 144 35.4
Sabra18G0025100 Salix brachista HOM05D001921 ORTHO05D001784 5.6e-07 58.5 144 35.4
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 7.3e-07 58.2 124 33.1
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 9.5e-07 57.8 126 35.7
THA.LOC104803850 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 9.5e-07 57.8 101 34.7
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 1.2e-06 57.4 148 36.5
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 1.2e-06 57.4 134 35.1
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 1.2e-06 57.4 134 35.1
Prupe.1G486700 Prunus persica HOM05D001921 ORTHO05D001784 1.2e-06 57.4 168 32.7
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 1.6e-06 57.0 109 37.6
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.6e-06 57.0 148 36.5
AUR62041439 Chenopodium quinoa HOM05D001921 ORTHO05D001784 2.1e-06 56.6 164 34.1
AUR62042019 Chenopodium quinoa HOM05D001921 ORTHO05D001784 2.1e-06 56.6 164 34.1
AUR62043765 Chenopodium quinoa HOM05D001921 ORTHO05D001784 2.1e-06 56.6 164 34.1
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 2.1e-06 56.6 144 33.3
A01p06280 Brassica napus HOM05D001921 ORTHO05D001784 2.8e-06 56.2 136 31.6
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 2.8e-06 56.2 108 38.9
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 3.6e-06 55.8 104 37.5
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 3.6e-06 55.8 108 38.0
PGSC0003DMG400029898 Solanum tuberosum HOM05D001921 ORTHO05D001784 3.6e-06 55.8 166 31.3
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 3.6e-06 55.8 111 36.9
MD15G1131400 Malus domestica HOM05D001921 ORTHO05D001784 4.7e-06 55.5 172 30.8
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 4.7e-06 55.5 149 32.2
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 6.2e-06 55.1 79 39.2
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 8.0e-06 54.7 96 38.5
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 8.0e-06 54.7 96 38.5
A03p61190 Brassica napus HOM05D001921 ORTHO05D001784 8.0e-06 54.7 177 30.5
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 8.0e-06 54.7 146 34.9
Lsat_1_v5_gn_6_115320 Lactuca sativa HOM05D001921 ORTHO05D001784 8.0e-06 54.7 186 29.0
Oeu030377.1 Olea europaea HOM05D001921 ORTHO05D001784 8.0e-06 54.7 146 31.5
Potri.006G260000 Populus trichocarpa HOM05D001921 ORTHO05D001784 8.0e-06 54.7 102 38.2


User provided reference genes

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