Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02050 Brassica carinata HOM05D006737 ORTHO05D008418 2.4e-44 181.8 92 100.0
BolC3t16077H Brassica oleracea HOM05D006737 ORTHO05D008418 1.2e-32 142.9 97 77.3
BcaB01g02446 Brassica carinata HOM05D006737 ORTHO05D008418 3.6e-32 141.4 97 76.3
C03p37890 Brassica napus HOM05D006737 ORTHO05D008418 4.0e-31 137.9 97 75.3
BcaC01g06761 Brassica carinata HOM05D006737 ORTHO05D008418 5.2e-31 137.5 97 75.3
Sp6g02290 Schrenkiella parvula HOM05D006737 ORTHO05D008418 6.7e-31 137.1 97 74.2
CARHR250600 Cardamine hirsuta HOM05D006737 ORTHO05D008418 2.0e-30 135.6 97 75.3
AL6G50710 Arabidopsis lyrata HOM05D006737 ORTHO05D008418 4.4e-30 134.4 97 72.2
Thhalv10028823m.g Eutrema salsugineum HOM05D006737 ORTHO05D008418 7.5e-30 133.7 97 72.2
A03p31080 Brassica napus HOM05D006737 ORTHO05D008418 1.3e-29 132.9 97 72.2
BraA03t12285Z Brassica rapa HOM05D006737 ORTHO05D008418 1.3e-29 132.9 97 72.2
Carub.0006s3475 Capsella rubella HOM05D006737 ORTHO05D008418 3.5e-27 124.8 98 69.4
Aa31LG5G2050 Aethionema arabicum HOM05D006737 ORTHO05D008418 2.5e-25 118.6 106 61.3
AT4G02405 Arabidopsis thaliana HOM05D006737 ORTHO05D008418 6.8e-23 110.5 74 77.0
Manes.01G219800 Manihot esculenta HOM05D006737 ORTHO05D008418 4.7e-16 87.8 102 47.1
Atru.chr5.1140 Acer truncatum HOM05D006737 ORTHO05D008418 8.0e-16 87.0 102 47.1
PGR119G0152 Punica granatum HOM05D006737 ORTHO05D008418 8.0e-16 87.0 102 49.0
COL.COLO4_23338 Corchorus olitorius HOM05D006737 ORTHO05D008418 1.8e-15 85.9 102 48.0
vmacro02447 Vaccinium macrocarpon HOM05D006737 ORTHO05D008418 1.8e-15 85.9 102 45.1
Ciclev10021225m.g Citrus clementina HOM05D006737 ORTHO05D008418 2.3e-15 85.5 102 47.1
Cpa.g.sc9.256 Carica papaya HOM05D006737 ORTHO05D008418 3.0e-15 85.1 96 47.9
Cfa005906 Carpinus fangiana HOM05D006737 ORTHO05D008418 3.0e-15 85.1 102 45.1
Prupe.8G262100 Prunus persica HOM05D006737 ORTHO05D008418 3.0e-15 85.1 102 47.1
CiPaw.07G109800 Carya illinoinensis HOM05D006737 ORTHO05D008418 4.0e-15 84.7 101 47.5
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 4.0e-15 84.7 102 45.1
CiPaw.07G109600 Carya illinoinensis HOM05D006737 ORTHO05D008418 8.8e-15 83.6 101 46.5
Haze_04944 Corylus avellana HOM05D006737 ORTHO05D008418 1.2e-14 83.2 101 44.6
Gorai.008G144900 Gossypium raimondii HOM05D006737 ORTHO05D008418 2.0e-14 82.4 102 46.1
MD03G1288800 Malus domestica HOM05D006737 ORTHO05D008418 2.0e-14 82.4 102 45.1
Gohir.A12G130100 Gossypium hirsutum HOM05D006737 ORTHO05D008418 4.4e-14 81.3 102 46.1
Nn3g21504 Nelumbo nucifera HOM05D006737 ORTHO05D008418 4.4e-14 81.3 102 43.1
Thecc.01G301300 Theobroma cacao HOM05D006737 ORTHO05D008418 4.4e-14 81.3 82 56.1
CANSAT25G2451 Cannabis sativa HOM05D006737 ORTHO05D008418 9.8e-14 80.1 85 47.1
Gohir.D12G133900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 9.8e-14 80.1 102 45.1
Sopen06g035940 Solanum pennellii HOM05D006737 ORTHO05D008418 1.3e-13 79.7 104 43.3
Hund05430 Selenicereus undatus HOM05D006737 ORTHO05D008418 1.7e-13 79.3 100 45.0
FvH4_2g25800 Fragaria vesca HOM05D006737 ORTHO05D008418 2.2e-13 79.0 102 44.1
FAN24G1027 Fragaria x ananassa HOM05D006737 ORTHO05D008418 2.2e-13 79.0 102 44.1
FAN27G1696 Fragaria x ananassa HOM05D006737 ORTHO05D008418 3.7e-13 78.2 102 43.1
TWI14G0449 Tripterygium wilfordii HOM05D006737 ORTHO05D008418 3.7e-13 78.2 102 44.1
FAN15G3576 Fragaria x ananassa HOM05D006737 ORTHO05D008418 4.9e-13 77.8 102 43.1
Eucgr.H01107 Eucalyptus grandis HOM05D006737 ORTHO05D008418 6.3e-13 77.4 102 45.1
arahy.Tifrunner.gnm1.ann1.B4PCIP Arachis hypogaea HOM05D006737 ORTHO05D008418 1.1e-12 76.6 98 39.8
Lj2A1195G25 Lonicera japonica HOM05D006737 ORTHO05D008418 1.1e-12 76.6 91 46.2
RcHm_v2.0_Chr6g0294111 Rosa chinensis HOM05D006737 ORTHO05D008418 1.1e-12 76.6 102 43.1
TAR365G0544 Trochodendron aralioides HOM05D006737 ORTHO05D008418 1.1e-12 76.6 102 41.2
Actinidia01489 Actinidia chinensis HOM05D006737 ORTHO05D008418 1.8e-12 75.9 102 43.1
Aqoxy2G02933 Aquilegia oxysepala HOM05D006737 ORTHO05D008418 1.8e-12 75.9 102 42.2
DCAR_002840 Daucus carota HOM05D006737 ORTHO05D008418 1.8e-12 75.9 103 41.7
Lj6g0001904 Lotus japonicus HOM05D006737 ORTHO05D008418 1.8e-12 75.9 102 39.2
CAN.G1209.24 Capsicum annuum HOM05D006737 ORTHO05D008418 2.4e-12 75.5 104 44.2
Potri.002G203900 Populus trichocarpa HOM05D006737 ORTHO05D008418 2.4e-12 75.5 102 42.2
Sc05g0003760 Simmondsia chinensis HOM05D006737 ORTHO05D008418 2.4e-12 75.5 100 42.0
Sabra02G0155300 Salix brachista HOM05D006737 ORTHO05D008418 3.1e-12 75.1 81 49.4
Solyc06g084570.4 Solanum lycopersicum HOM05D006737 ORTHO05D008418 3.1e-12 75.1 108 41.7
MBI19_g25361_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 5.4e-12 74.3 101 37.6
Phvul.001G207600 Phaseolus vulgaris HOM05D006737 ORTHO05D008418 5.4e-12 74.3 102 42.2
arahy.Tifrunner.gnm1.ann1.AY1VU4 Arachis hypogaea HOM05D006737 ORTHO05D008418 7.0e-12 73.9 102 39.2
CSS0030900 Camellia sinensis var. sinensis HOM05D006737 ORTHO05D008418 9.2e-12 73.6 101 43.6
Nitab4.5_0002820g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 9.2e-12 73.6 104 40.4
Oeu048335.1 Olea europaea HOM05D006737 ORTHO05D008418 1.2e-11 73.2 101 40.6
Peaxi162Scf00140g01213 Petunia axillaris HOM05D006737 ORTHO05D008418 1.6e-11 72.8 104 40.4
Rhsim13G0009900 Rhododendron simsii HOM05D006737 ORTHO05D008418 1.6e-11 72.8 113 39.8
MBI19_g26092_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 2.0e-11 72.4 97 38.1
Nitab4.5_0004367g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 2.0e-11 72.4 104 42.3
arahy.Tifrunner.gnm1.ann1.MB1A81 Arachis hypogaea HOM05D006737 ORTHO05D008418 2.7e-11 72.0 102 40.2
FAN20G1602 Fragaria x ananassa HOM05D006737 ORTHO05D008418 2.7e-11 72.0 97 41.2
SalBow2G2271 Salvia bowleyana HOM05D006737 ORTHO05D008418 2.7e-11 72.0 102 39.2
VMungo1383G2597 Vigna mungo HOM05D006737 ORTHO05D008418 2.7e-11 72.0 102 39.2
Lsat_1_v5_gn_8_164261 Lactuca sativa HOM05D006737 ORTHO05D008418 3.5e-11 71.6 106 40.6
EL10Ac7g17513 Beta vulgaris HOM05D006737 ORTHO05D008418 4.5e-11 71.2 99 40.4
Migut.N01508 Erythranthe guttata HOM05D006737 ORTHO05D008418 4.5e-11 71.2 98 40.8
Migut.O00484 Erythranthe guttata HOM05D006737 ORTHO05D008418 4.5e-11 71.2 98 40.8
MELO3C024580.2 Cucumis melo HOM05D006737 ORTHO05D008418 5.9e-11 70.9 101 41.6
ECA236G1530 Erigeron canadensis HOM05D006737 ORTHO05D008418 7.8e-11 70.5 98 43.9
Glyma.19G211400 Glycine max HOM05D006737 ORTHO05D008418 7.8e-11 70.5 102 40.2
PSO407G0435 Papaver somniferum HOM05D006737 ORTHO05D008418 7.8e-11 70.5 100 42.0
AUR62008669 Chenopodium quinoa HOM05D006737 ORTHO05D008418 1.0e-10 70.1 102 36.3
QL12p028401 Quercus lobata HOM05D006737 ORTHO05D008418 1.0e-10 70.1 101 40.6
AUR62025575 Chenopodium quinoa HOM05D006737 ORTHO05D008418 1.3e-10 69.7 102 37.3
MD11G1309100 Malus domestica HOM05D006737 ORTHO05D008418 1.3e-10 69.7 102 40.2
Gohir.A08G076400 Gossypium hirsutum HOM05D006737 ORTHO05D008418 1.7e-10 69.3 95 42.1
SGA_v2.0_scaffold198G41142 Striga asiatica HOM05D006737 ORTHO05D008418 1.7e-10 69.3 103 38.8
Migut.J01135 Erythranthe guttata HOM05D006737 ORTHO05D008418 2.3e-10 68.9 95 40.0
ClCG01G014930 Citrullus lanatus HOM05D006737 ORTHO05D008418 2.9e-10 68.6 104 40.4
CsaV3_6G041030 Cucumis sativus L. HOM05D006737 ORTHO05D008418 2.9e-10 68.6 101 40.6
Gohir.D08G085900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 2.9e-10 68.6 95 42.1
MSTRG.12607 Avicennia marina HOM05D006737 ORTHO05D008418 3.8e-10 68.2 105 39.0
PSO170G1161 Papaver somniferum HOM05D006737 ORTHO05D008418 3.8e-10 68.2 100 40.0
CDE01G0235 Ceratophyllum demersum HOM05D006737 ORTHO05D008418 5.0e-10 67.8 96 41.7
Cc01_g20900 Coffea canephora HOM05D006737 ORTHO05D008418 5.0e-10 67.8 99 41.4
Gorai.004G090400 Gossypium raimondii HOM05D006737 ORTHO05D008418 5.0e-10 67.8 95 42.1
Os07g0247100 Oryza sativa ssp. japonica HOM05D006737 ORTHO05D008418 6.1e-08 60.8 103 39.8
Zm00001eb097030 Zea mays HOM05D006737 ORTHO05D008418 6.1e-08 60.8 103 40.8
Hma1.2p1_0491F.1_g164620 Hydrangea macrophylla HOM05D006737 ORTHO05D008418 1.2e-06 56.6 79 39.2
Lalb_Chr02g0146391 Lupinus albus HOM05D006737 ORTHO05D008418 5.7e-06 54.3 80 38.8
arahy.Tifrunner.gnm1.ann1.MU6BTE Arachis hypogaea HOM05D006737 ORTHO05D008418 9.8e-06 53.5 98 33.7


User provided reference genes

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