Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 2.4e-107 392.1 193 100.0
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 9.4e-75 283.9 206 78.2
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 1.2e-74 283.5 206 77.2
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 4.6e-74 281.6 208 77.4
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 5.1e-73 278.1 208 76.9
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 4.8e-71 271.6 199 76.9
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 5.3e-70 268.1 208 75.0
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 4.5e-69 265.0 202 74.3
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 5.7e-64 248.1 209 69.9
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 1.8e-62 243.0 199 71.4
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 1.8e-62 243.0 199 71.4
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 2.9e-60 235.7 193 70.5
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 1.9e-59 233.0 197 70.6
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 5.5e-59 231.5 193 69.4
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.1e-56 223.8 186 69.9
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 1.8e-54 216.5 196 68.4
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 1.0e-52 210.7 196 67.3
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 2.9e-44 182.6 185 62.2
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 1.5e-43 180.3 185 61.6
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.6e-42 176.8 219 55.7
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.8e-41 173.3 214 55.1
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 4.9e-39 165.2 214 50.9
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.9e-39 165.2 212 51.4
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-38 164.1 212 50.9
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 9.1e-38 161.0 216 50.5
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 9.1e-38 161.0 212 50.5
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 3.5e-37 159.1 215 49.3
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 1.7e-36 156.8 217 49.3
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 5.0e-36 155.2 219 47.0
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 1.1e-35 154.1 199 48.7
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 5.5e-35 151.8 217 47.0
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.2e-34 150.6 210 47.6
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.6e-34 150.2 210 47.1
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 6.1e-34 148.3 212 46.7
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 6.1e-34 148.3 205 48.8
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 8.0e-34 147.9 221 46.2
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 8.0e-34 147.9 202 49.0
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 8.0e-34 147.9 216 46.8
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 8.0e-34 147.9 214 45.8
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 1.0e-33 147.5 216 47.2
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 4.0e-33 145.6 212 46.2
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 8.9e-33 144.4 214 45.8
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 8.9e-33 144.4 206 45.1
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 8.9e-33 144.4 210 46.2
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 8.9e-33 144.4 217 44.7
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.2e-32 144.1 203 47.8
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 1.2e-32 144.1 216 46.8
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.5e-32 143.7 212 43.9
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 2.0e-32 143.3 208 46.2
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 2.0e-32 143.3 215 47.4
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 2.0e-32 143.3 217 44.7
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 3.4e-32 142.5 199 45.7
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 4.4e-32 142.1 209 43.5
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.4e-32 142.1 222 45.5
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.7e-32 141.7 202 47.0
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 7.5e-32 141.4 212 46.7
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 7.5e-32 141.4 228 42.5
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 7.5e-32 141.4 216 44.9
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 9.8e-32 141.0 209 44.5
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 1.7e-31 140.2 213 45.1
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 2.2e-31 139.8 243 41.6
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.7e-31 139.0 214 46.3
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 3.7e-31 139.0 222 43.2
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 4.9e-31 138.7 192 47.4
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 6.3e-31 138.3 219 43.8
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 6.3e-31 138.3 223 43.9
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 6.3e-31 138.3 217 43.3
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 8.3e-31 137.9 224 41.5
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.1e-30 137.5 197 46.2
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.1e-30 137.5 224 42.9
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.4e-30 137.1 214 43.9
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.8e-30 136.7 214 46.7
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 4.1e-30 135.6 215 45.1
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 4.1e-30 135.6 223 43.5
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 4.1e-30 135.6 206 44.7
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 4.1e-30 135.6 217 44.2
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 4.1e-30 135.6 209 45.9
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 5.4e-30 135.2 86 83.7
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 5.4e-30 135.2 212 43.4
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 7.0e-30 134.8 212 42.0
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 7.0e-30 134.8 218 43.1
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 9.2e-30 134.4 209 45.0
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.2e-29 134.0 202 45.0
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 2.0e-29 133.3 204 45.1
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 2.7e-29 132.9 225 43.6
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 2.7e-29 132.9 206 44.7
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 3.5e-29 132.5 212 45.3
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 4.6e-29 132.1 222 41.9
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 4.6e-29 132.1 202 45.0
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 5.9e-29 131.7 212 44.3
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 5.9e-29 131.7 211 44.5
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 5.9e-29 131.7 202 44.6
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 7.8e-29 131.3 208 42.8
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.3e-28 130.6 213 42.7
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 2.3e-28 129.8 205 45.9
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 2.3e-28 129.8 201 44.8
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 2.9e-28 129.4 202 45.5
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 3.9e-28 129.0 212 42.9
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 3.9e-28 129.0 201 45.8
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 5.0e-28 128.6 221 42.5
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 5.0e-28 128.6 211 43.6
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 6.6e-28 128.3 213 42.3
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.1e-27 127.5 212 43.4
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 1.5e-27 127.1 191 45.5
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 4.3e-27 125.6 224 41.5
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 7.3e-27 124.8 196 44.4
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 1.2e-26 124.0 223 42.6
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 2.1e-26 123.2 205 43.9
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 2.8e-26 122.9 223 42.2
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 2.8e-26 122.9 215 42.8
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 8.0e-26 121.3 213 42.7
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.0e-25 120.9 199 43.7
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 1.4e-25 120.6 183 43.2
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 1.8e-25 120.2 208 41.8
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 1.8e-25 120.2 208 41.8
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.8e-25 120.2 215 42.8
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 3.1e-25 119.4 189 45.0
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 5.2e-25 118.6 210 41.0
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 5.2e-25 118.6 218 39.9
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 6.8e-25 118.2 226 42.0
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.2e-24 117.5 214 41.6
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 2.0e-24 116.7 204 41.2
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 3.4e-24 115.9 237 38.8
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 4.4e-24 115.5 80 76.2
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.8e-24 115.2 173 43.9
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 7.5e-24 114.8 206 38.8
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 9.8e-24 114.4 215 37.7
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 3.7e-23 112.5 218 38.1
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 4.9e-23 112.1 218 39.0
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 8.3e-23 111.3 212 40.1
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.1e-22 110.9 162 46.3
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 1.1e-22 110.9 215 39.1
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 1.9e-22 110.2 242 35.5
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.4e-22 109.8 206 40.8
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 3.2e-22 109.4 219 37.0
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 5.4e-22 108.6 204 38.2
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 7.0e-22 108.2 224 37.5
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 7.0e-22 108.2 208 41.8
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 9.2e-22 107.8 211 38.4
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 3.5e-21 105.9 211 37.9
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 3.5e-21 105.9 224 39.3
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 4.6e-21 105.5 217 37.8
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 6.0e-21 105.1 196 41.8
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 6.0e-21 105.1 219 37.4
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 1.3e-20 104.0 205 40.0
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 6.6e-20 101.7 218 36.7
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 8.6e-20 101.3 204 38.2
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 4.3e-19 99.0 54 88.9
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 9.5e-19 97.8 280 32.5
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 6.2e-18 95.1 203 39.4
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 8.1e-18 94.7 90 58.9
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 1.4e-17 94.0 166 41.6
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 2.3e-17 93.2 205 36.6
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.5e-16 90.5 201 38.3
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 1.3e-15 87.4 178 40.4
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 3.7e-15 85.9 144 40.3
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 1.5e-11 73.9 173 36.4
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.5e-11 73.2 126 42.1
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 5.6e-11 72.0 166 36.7
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 2.8e-10 69.7 206 32.5
BraA03t12266Z Brassica rapa HOM05D044247 ORTHO05D042649 4.0e-09 65.9 41 85.4
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 1.3e-07 60.8 144 30.6
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 3.7e-07 59.3 103 41.7
C03p37660 Brassica napus HOM05D044247 ORTHO05D042649 6.4e-07 58.5 38 84.2
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 6.4e-07 58.5 164 32.3
AagrBONN_evm.TU.Sc2ySwM_362.2843 Anthoceros agrestis HOM05D004016 ORTHO05D004732 2.4e-06 56.6 94 38.3
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 4.1e-06 55.8 70 44.3


User provided reference genes

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