Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 2.0e-137 493.0 386 100.0
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 6.6e-112 408.3 387 84.5
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 8.9e-109 397.9 387 85.3
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 1.2e-108 397.5 423 81.6
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 3.7e-107 392.5 422 82.5
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 6.4e-107 391.7 386 83.4
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 3.2e-106 389.4 387 84.0
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 3.2e-106 389.4 387 82.9
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 4.0e-101 372.5 386 80.8
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 2.9e-99 366.3 431 78.4
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 3.7e-99 365.9 425 79.5
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 4.6e-97 359.0 441 72.6
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 1.9e-95 353.6 387 79.8
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 3.3e-95 352.8 424 78.5
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 3.3e-95 352.8 413 79.2
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 6.2e-94 348.6 387 80.1
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 7.6e-92 341.7 387 55.0
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 3.0e-88 329.7 387 63.6
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 5.6e-87 325.5 384 76.6
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 2.6e-84 316.6 440 72.0
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 2.1e-81 307.0 433 71.8
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 3.9e-80 302.8 442 68.1
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 3.6e-78 296.2 442 70.8
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 2.2e-75 287.0 429 65.5
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.9e-75 286.6 406 70.9
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 3.8e-75 286.2 408 70.3
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 6.4e-75 285.4 409 65.0
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.1e-74 284.6 420 59.5
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 3.2e-74 283.1 157 94.3
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 3.2e-74 283.1 385 56.1
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 9.3e-74 281.6 427 62.8
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 2.7e-73 280.0 398 71.1
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.5e-73 279.6 428 67.5
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 7.9e-73 278.5 435 62.5
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 7.9e-73 278.5 435 62.5
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 1.0e-72 278.1 435 65.1
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 2.3e-72 276.9 446 64.3
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 2.3e-72 276.9 420 70.5
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 8.7e-72 275.0 421 63.9
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.1e-71 274.6 425 67.5
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 1.5e-71 274.2 184 82.1
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 4.3e-71 272.7 423 66.7
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 4.3e-71 272.7 393 62.3
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 5.6e-71 272.3 414 67.6
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 5.6e-71 272.3 426 62.2
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 5.6e-71 272.3 421 68.4
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 7.4e-71 271.9 180 83.3
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 7.4e-71 271.9 406 67.2
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 9.6e-71 271.6 426 63.1
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.3e-70 271.2 443 67.3
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.3e-70 271.2 431 68.2
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 2.8e-70 270.0 385 70.1
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.1e-69 268.1 458 60.9
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.4e-69 267.7 455 60.9
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 1.8e-69 267.3 179 82.7
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.8e-69 267.3 455 61.3
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 4.0e-69 266.2 134 99.3
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 6.9e-69 265.4 426 62.2
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-68 264.6 134 99.3
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 3.4e-68 263.1 456 61.6
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 3.4e-68 263.1 394 71.6
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 4.5e-68 262.7 462 61.9
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 4.5e-68 262.7 443 65.2
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 4.5e-68 262.7 417 68.8
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 4.5e-68 262.7 419 68.3
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 5.8e-68 262.3 389 67.6
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 2.9e-67 260.0 424 67.9
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 3.8e-67 259.6 428 65.7
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 4.9e-67 259.2 413 68.8
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 8.4e-67 258.5 457 56.0
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 1.1e-66 258.1 434 63.4
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.1e-66 258.1 415 67.0
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 1.1e-66 258.1 418 66.7
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.4e-66 257.7 415 67.0
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.2e-66 256.5 418 66.5
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 9.3e-66 255.0 171 77.8
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 9.3e-66 255.0 134 95.5
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 9.3e-66 255.0 177 80.2
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 9.3e-66 255.0 177 80.2
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 1.2e-65 254.6 423 66.0
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 1.6e-65 254.2 415 63.9
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 2.1e-65 253.8 442 66.5
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.1e-65 253.8 418 62.2
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 2.7e-65 253.4 406 69.7
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 3.5e-65 253.1 458 51.3
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 4.6e-65 252.7 439 60.4
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 6.0e-65 252.3 177 76.3
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 7.9e-65 251.9 451 53.9
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 7.9e-65 251.9 178 74.7
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 7.9e-65 251.9 421 61.0
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.0e-64 251.5 180 72.8
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 1.0e-64 251.5 410 67.1
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 1.3e-64 251.1 175 75.4
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.8e-64 250.8 179 77.1
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 2.3e-64 250.4 442 53.8
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 3.0e-64 250.0 438 59.1
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 3.0e-64 250.0 171 78.4
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 6.7e-64 248.8 171 76.6
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 8.7e-64 248.4 174 76.4
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.1e-63 248.1 427 60.7
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 1.1e-63 248.1 168 78.0
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 1.5e-63 247.7 451 64.5
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.9e-63 247.3 159 81.1
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 3.3e-63 246.5 478 53.3
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 3.3e-63 246.5 164 77.4
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 4.3e-63 246.1 185 73.0
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 9.6e-63 245.0 168 76.2
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 9.6e-63 245.0 159 79.9
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 1.3e-62 244.6 169 76.9
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 1.3e-62 244.6 413 51.1
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.6e-62 244.2 449 55.7
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 3.7e-62 243.0 164 77.4
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.1e-61 241.5 463 59.2
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 3.1e-61 240.0 454 53.7
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 4.0e-61 239.6 174 73.6
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 5.3e-61 239.2 451 57.2
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 6.9e-61 238.8 171 76.6
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 9.0e-61 238.4 181 72.9
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 9.0e-61 238.4 172 73.3
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 9.0e-61 238.4 179 70.9
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 1.2e-60 238.0 155 76.8
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 1.5e-60 237.7 459 62.1
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 2.0e-60 237.3 412 65.3
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.4e-60 236.5 398 66.8
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 4.5e-60 236.1 433 65.6
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 5.8e-60 235.7 159 77.4
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 7.6e-60 235.3 159 77.4
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 1.0e-59 235.0 396 67.7
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 1.0e-59 235.0 446 49.8
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 1.0e-59 235.0 165 77.6
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.3e-59 234.6 452 52.0
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.2e-59 233.8 145 81.4
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.2e-59 233.8 397 68.3
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 8.4e-59 231.9 458 60.5
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.5e-58 230.3 405 67.2
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 5.5e-58 229.2 422 61.4
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 2.5e-55 220.3 178 68.5
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 2.5e-55 220.3 429 47.6
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 9.7e-55 218.4 387 58.7
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 5.9e-52 209.1 133 78.9
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 3.8e-51 206.5 391 64.5
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-49 201.4 133 81.2
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.0e-48 198.4 141 77.3
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-48 198.0 105 94.3
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.6e-44 183.7 166 62.0
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 7.7e-44 182.2 182 58.8
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 6.1e-41 172.6 123 74.0
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 1.4e-40 171.4 86 100.0
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 1.1e-39 168.3 106 80.2
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 5.7e-39 166.0 102 83.3
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 9.7e-39 165.2 86 96.5
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 1.3e-38 164.9 129 70.5
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 2.8e-38 163.7 152 60.5
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 1.1e-37 161.8 391 50.6
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 3.5e-36 156.8 107 72.0
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-35 155.2 87 89.7
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.9e-35 153.7 87 88.5
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 1.0e-32 145.2 98 81.6
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 1.0e-32 145.2 160 50.6
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 6.7e-32 142.5 93 76.3
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 4.4e-31 139.8 92 79.3
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 7.0e-29 132.5 70 95.7
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 1.6e-28 131.3 112 54.5
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 4.5e-28 129.8 70 94.3
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 3.2e-26 123.6 70 85.7
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 5.5e-26 122.9 69 91.3
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 6.3e-22 109.4 86 70.9
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.1e-21 107.1 324 61.7
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 9.1e-21 105.5 65 80.0
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.7e-20 104.0 166 47.6
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 5.5e-18 96.3 56 87.5
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 8.8e-16 89.0 56 80.4
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 7.5e-15 85.9 70 62.9
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 7.0e-13 79.3 55 72.7
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 8.6e-11 72.4 384 47.1
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 4.2e-10 70.1 83 51.8
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 9.5e-10 68.9 72 55.6
BNapus_Darmor_BZH_scaffold_38p02420 Brassica napus HOM05D003848 ORTHO05D004616 3.6e-09 67.0 34 91.2


User provided reference genes

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