Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.2e-242 842.8 424 100.0
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 2.9e-199 698.7 435 83.7
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-198 696.0 430 84.9
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.6e-197 693.0 429 83.9
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 8.7e-196 687.2 436 81.7
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.3e-191 673.3 460 78.0
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.3e-186 656.8 431 80.7
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.2e-170 602.8 455 72.1
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 9.4e-158 560.8 440 68.6
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.6e-157 558.9 439 68.6
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 8.8e-156 554.3 433 68.8
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 6.0e-128 461.8 374 67.9
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.8e-108 397.1 440 53.4
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 9.0e-108 394.8 440 52.5
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.2e-105 386.0 428 52.3
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.0e-104 382.1 412 52.4
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 6.6e-103 378.6 438 51.8
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.8e-101 372.5 404 54.5
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 5.3e-100 369.0 409 54.3
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 3.4e-99 366.3 420 52.6
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 6.4e-98 362.1 407 52.8
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 8.4e-98 361.7 420 52.1
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 4.6e-96 355.9 430 49.1
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 1.0e-95 354.8 404 52.2
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.9e-95 352.8 402 52.2
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 3.9e-95 352.8 429 49.4
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 4.3e-94 349.4 430 48.6
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.0e-92 342.8 424 50.0
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 9.0e-92 341.7 409 51.8
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 3.2e-89 333.2 414 48.1
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-88 331.3 414 47.6
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 4.6e-88 329.3 414 47.3
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 6.0e-88 328.9 400 51.2
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 2.5e-86 323.6 434 46.5
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 7.4e-86 322.0 399 49.1
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-85 320.9 453 45.5
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 2.5e-81 307.0 413 45.8
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 2.5e-81 307.0 591 36.0
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.3e-79 301.2 455 40.7
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.0e-79 300.1 455 41.1
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 3.0e-79 300.1 455 41.1
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 5.1e-79 299.3 440 43.2
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.9e-78 297.4 458 40.0
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.6e-77 294.3 433 40.4
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 1.6e-77 294.3 459 40.1
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 3.7e-77 293.1 469 39.2
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.8e-77 292.7 438 40.2
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 4.8e-77 292.7 438 40.2
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.1e-76 291.6 438 40.2
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.4e-76 291.2 455 40.9
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 2.4e-76 290.4 461 39.3
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 3.1e-76 290.0 470 39.4
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 4.1e-76 289.7 456 39.9
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 4.1e-76 289.7 455 38.9
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.5e-75 287.7 426 41.3
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 2.6e-75 287.0 455 38.9
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 2.6e-75 287.0 459 38.6
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 3.4e-75 286.6 458 39.5
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 5.9e-75 285.8 423 40.9
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 7.6e-75 285.4 455 40.4
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 1.3e-74 284.6 458 38.9
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.2e-74 283.9 457 38.9
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.2e-74 283.9 457 38.9
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 2.9e-74 283.5 459 39.2
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 8.5e-74 282.0 429 44.8
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 8.5e-74 282.0 457 38.7
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 8.5e-74 282.0 459 39.0
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.1e-73 281.6 454 38.8
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.9e-73 280.8 407 40.5
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 4.2e-73 279.6 451 39.0
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 4.2e-73 279.6 457 38.3
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 4.2e-73 279.6 455 38.7
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 9.3e-73 278.5 454 38.3
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.6e-72 277.7 457 38.5
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 2.1e-72 277.3 454 39.9
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 2.1e-72 277.3 474 39.7
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.1e-72 277.3 456 37.7
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 4.6e-72 276.2 468 37.8
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 4.6e-72 276.2 457 38.5
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 6.1e-72 275.8 469 37.7
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 7.9e-72 275.4 458 38.6
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.3e-71 274.6 428 39.0
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.8e-71 274.2 421 39.4
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 1.8e-71 274.2 459 38.6
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.0e-71 273.5 397 45.8
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 3.9e-71 273.1 431 38.7
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 5.1e-71 272.7 454 37.7
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 6.7e-71 272.3 462 38.1
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.5e-70 271.2 458 38.2
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 3.3e-70 270.0 427 38.6
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 3.3e-70 270.0 458 38.2
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.3e-70 269.6 458 38.4
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 4.3e-70 269.6 451 38.4
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 5.7e-70 269.2 434 38.9
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 7.4e-70 268.9 461 38.0
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.7e-69 267.7 443 38.1
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 2.2e-69 267.3 427 38.6
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.8e-69 266.9 463 37.4
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.7e-69 266.5 420 38.8
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.1e-68 265.0 494 35.2
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 3.1e-68 263.5 458 37.1
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 4.1e-68 263.1 458 37.3
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 2.2e-66 257.3 487 37.0
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 2.9e-66 256.9 501 35.5
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.9e-65 254.2 463 35.9
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 7.2e-65 252.3 416 38.7
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.2e-64 251.5 405 40.2
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.0e-63 248.4 468 36.1
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 2.3e-63 247.3 455 36.5
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 3.0e-63 246.9 410 35.9
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 6.7e-63 245.7 465 37.4
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 4.1e-60 236.5 456 36.2
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 9.1e-60 235.3 425 36.9
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 5.9e-59 232.6 363 40.2
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.7e-58 231.1 440 36.8
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 2.2e-58 230.7 422 38.4
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.4e-57 228.0 389 38.3
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 7.4e-54 215.7 257 47.5
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 9.1e-52 208.8 476 33.6
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.6e-51 207.2 277 48.0
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 7.7e-51 205.7 340 39.7
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.9e-49 201.1 422 34.4
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 5.5e-49 199.5 446 32.7
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.0e-47 195.3 252 50.4
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.7e-47 192.6 262 46.2
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 2.2e-45 187.6 321 38.0
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 5.5e-41 172.9 405 35.3
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 8.0e-40 169.1 308 38.0
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.8e-39 167.9 246 38.2
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.0e-39 167.2 295 35.9
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 5.4e-36 156.4 335 31.6
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 3.5e-35 153.7 150 49.3
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 5.0e-34 149.8 150 49.3
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 2.5e-33 147.5 147 58.5
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 1.4e-31 141.7 204 42.2
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 8.9e-31 139.0 153 56.2
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.3e-29 135.2 337 33.2
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.7e-29 134.8 279 35.1
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 3.7e-29 133.7 404 27.5
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.3e-29 132.5 115 56.5
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 5.0e-26 123.2 260 32.3
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 8.6e-26 122.5 147 43.5
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 3.3e-25 120.6 354 25.7
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 1.5e-22 111.7 149 50.3
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 6.4e-21 106.3 127 45.7
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 1.9e-20 104.8 198 42.9
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 1.9e-20 104.8 138 39.9
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 5.4e-20 103.2 395 26.6
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 3.0e-18 97.4 191 41.9
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 3.6e-16 90.5 127 36.2
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 2.3e-15 87.8 127 38.6
CARHR251120 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.3e-15 87.8 66 68.2
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 2.6e-14 84.3 99 40.4
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 4.4e-14 83.6 323 28.2
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 7.5e-14 82.8 68 64.7
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 1.1e-12 79.0 145 36.6
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 4.1e-12 77.0 338 25.1
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.6e-11 75.1 116 39.7
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 2.7e-11 74.3 275 25.5
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 2.7e-11 74.3 84 41.7
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.3e-10 72.0 141 33.3
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 3.9e-10 70.5 93 39.8
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 8.6e-10 69.3 274 26.6
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.3e-09 66.2 263 27.0
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 2.1e-08 64.7 58 55.2
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.1e-08 62.8 112 38.4
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 3.1e-07 60.8 77 48.1
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 5.2e-07 60.1 123 35.8
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.8e-06 56.6 60 46.7
AL2G38120 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.5e-06 56.2 123 30.9


User provided reference genes

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