Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 5.4e-101 370.9 180 100.0
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 1.3e-94 349.7 199 88.4
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 1.3e-94 349.7 199 88.4
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 3.3e-90 335.1 199 83.9
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 5.6e-90 334.3 200 85.0
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 9.6e-90 333.6 200 85.0
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 1.3e-89 333.2 199 81.9
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 1.6e-89 332.8 199 81.9
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 1.1e-88 330.1 199 81.9
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 5.3e-88 327.8 199 79.4
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 6.9e-88 327.4 199 80.9
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 1.5e-87 326.2 199 79.4
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 2.0e-87 325.9 199 78.4
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 2.0e-87 325.9 199 78.9
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 2.9e-86 322.0 199 78.4
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 4.9e-86 321.2 199 77.9
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 1.8e-80 302.8 200 73.5
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 3.8e-78 295.0 142 93.7
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 1.2e-68 263.5 193 68.4
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 1.3e-65 253.4 145 81.4
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 1.4e-64 250.0 142 80.3
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 3.1e-64 248.8 143 79.0
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 9.1e-64 247.3 143 76.9
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 1.5e-63 246.5 183 66.1
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 4.5e-63 245.0 142 78.9
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 5.9e-63 244.6 143 78.3
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 7.7e-63 244.2 180 66.7
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 1.7e-62 243.0 143 79.0
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 1.7e-62 243.0 142 76.1
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 2.2e-62 242.7 143 77.6
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 2.2e-62 242.7 143 76.9
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 3.8e-62 241.9 143 76.2
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 3.8e-62 241.9 143 76.9
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 5.0e-62 241.5 145 75.9
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 6.5e-62 241.1 143 78.3
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 6.5e-62 241.1 142 77.5
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 6.5e-62 241.1 145 78.6
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 1.1e-61 240.4 183 63.9
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 1.9e-61 239.6 145 75.9
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 1.9e-61 239.6 145 77.2
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 2.5e-61 239.2 145 75.9
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 2.5e-61 239.2 186 65.1
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 3.2e-61 238.8 182 63.2
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 4.2e-61 238.4 144 76.4
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 4.2e-61 238.4 142 77.5
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 4.2e-61 238.4 143 75.5
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 7.2e-61 237.7 143 76.9
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 7.2e-61 237.7 143 76.9
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 7.2e-61 237.7 146 77.4
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 9.4e-61 237.3 144 76.4
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 9.4e-61 237.3 144 75.0
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 9.4e-61 237.3 143 76.2
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 1.2e-60 236.9 143 76.2
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 1.6e-60 236.5 143 76.2
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 1.6e-60 236.5 145 75.2
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 1.6e-60 236.5 187 62.6
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 2.1e-60 236.1 165 67.9
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 2.1e-60 236.1 145 73.8
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 2.1e-60 236.1 145 73.8
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 2.7e-60 235.7 147 76.2
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 3.6e-60 235.3 143 77.6
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 4.6e-60 235.0 144 76.4
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 4.6e-60 235.0 143 75.5
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 1.8e-59 233.0 143 74.1
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 1.8e-59 233.0 144 76.4
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 2.3e-59 232.6 145 73.8
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 3.9e-59 231.9 176 63.6
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 5.1e-59 231.5 145 73.1
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 6.7e-59 231.1 185 62.2
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 8.8e-59 230.7 145 73.1
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.5e-58 229.9 187 58.8
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 1.5e-58 229.9 143 73.4
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 2.0e-58 229.6 144 70.8
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 2.0e-58 229.6 145 72.4
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 2.0e-58 229.6 145 72.4
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 4.4e-58 228.4 145 73.8
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 7.4e-58 227.6 183 65.6
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 7.4e-58 227.6 144 72.9
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 9.7e-58 227.3 143 72.0
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 1.3e-57 226.9 140 74.3
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 1.7e-57 226.5 194 55.7
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 2.2e-57 226.1 145 71.7
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 2.8e-57 225.7 149 70.5
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 2.8e-57 225.7 181 62.4
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 4.8e-57 224.9 139 72.7
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 6.3e-57 224.6 144 72.9
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 8.2e-57 224.2 143 69.2
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 6.9e-56 221.1 148 69.6
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 1.5e-55 219.9 144 72.9
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 2.0e-55 219.5 143 70.6
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 2.6e-55 219.2 129 75.2
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 2.6e-55 219.2 142 69.7
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 4.5e-55 218.4 142 69.0
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 5.9e-55 218.0 184 59.2
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 5.0e-54 214.9 147 66.7
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 1.4e-53 213.4 142 68.3
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 7.2e-53 211.1 143 70.6
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 6.1e-52 208.0 144 67.4
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 1.4e-51 206.8 148 65.5
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 2.0e-50 203.0 189 53.4
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 1.7e-49 199.9 225 51.1
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 4.8e-49 198.4 183 54.6
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 5.0e-46 188.3 150 62.0
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 5.0e-46 188.3 132 63.6
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 1.9e-45 186.4 261 44.4
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 7.2e-45 184.5 149 58.4
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 2.7e-44 182.6 109 78.9
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 6.1e-44 181.4 108 77.8
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 1.0e-43 180.6 108 76.9
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 5.2e-43 178.3 146 61.6
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 1.7e-41 173.3 150 58.0
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 1.8e-40 169.9 109 74.3
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 1.6e-39 166.8 151 52.3
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 1.6e-39 166.8 151 52.3
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 2.3e-35 152.9 88 78.4
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 8.8e-35 151.0 100 68.0
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 1.3e-33 147.1 120 54.2
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 1.7e-33 146.7 85 77.6
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 2.2e-33 146.4 80 83.8
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 2.2e-33 146.4 86 75.6
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 3.7e-33 145.6 91 71.4
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 4.8e-33 145.2 86 75.6
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 1.1e-32 144.1 96 70.8
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 7.0e-32 141.4 112 57.1
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 5.9e-31 138.3 96 64.6
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 2.3e-30 136.3 117 55.6
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 2.5e-29 132.9 89 64.0
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 5.5e-29 131.7 86 69.8
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 2.1e-28 129.8 88 61.4
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 4.4e-26 122.1 66 81.8
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 1.3e-25 120.6 83 68.7
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 2.9e-22 109.4 205 34.6
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 3.0e-14 82.8 51 74.5
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 5.6e-13 78.6 141 39.7
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 5.8e-10 68.6 79 50.6
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.2e-09 66.6 44 70.5


User provided reference genes

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