Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01976 Brassica carinata HOM05D007479 ORTHO05D009416 4.0e-96 354.8 178 100.0
A09p02470 Brassica napus HOM05D007479 ORTHO05D009416 4.4e-87 324.7 179 92.2
BraA09t35894Z Brassica rapa HOM05D007479 ORTHO05D009416 4.4e-87 324.7 179 92.2
C09p02570 Brassica napus HOM05D007479 ORTHO05D009416 5.8e-87 324.3 179 91.6
BolC9t53187H Brassica oleracea HOM05D007479 ORTHO05D009416 9.8e-87 323.6 179 91.6
Sp6g03190 Schrenkiella parvula HOM05D007479 ORTHO05D009416 1.6e-81 306.2 177 88.1
Thhalv10029006m.g Eutrema salsugineum HOM05D007479 ORTHO05D009416 1.1e-77 293.5 179 83.8
AL6G49780 Arabidopsis lyrata HOM05D007479 ORTHO05D009416 1.2e-68 263.5 177 76.3
Carub.0006s3390 Capsella rubella HOM05D007479 ORTHO05D009416 4.7e-65 251.5 177 73.4
CARHR251580 Cardamine hirsuta HOM05D007479 ORTHO05D009416 6.2e-65 251.1 177 74.6
AT4G03150 Arabidopsis thaliana HOM05D007479 ORTHO05D009416 1.3e-62 243.4 188 69.7
THA.LOC104826012 Tarenaya hassleriana HOM05D007479 ORTHO05D009416 6.7e-51 204.5 179 62.6
CSS0010600 Camellia sinensis var. sinensis HOM05D007479 ORTHO05D009416 2.4e-45 186.0 138 65.9
CSS0014944 Camellia sinensis var. sinensis HOM05D007479 ORTHO05D009416 2.4e-45 186.0 138 65.9
Cpa.g.sc9.160 Carica papaya HOM05D007479 ORTHO05D009416 3.5e-44 182.2 125 69.6
Thecc.01G290200 Theobroma cacao HOM05D007479 ORTHO05D009416 6.0e-44 181.4 150 63.3
TWI59G0977 Tripterygium wilfordii HOM05D007479 ORTHO05D009416 1.8e-43 179.9 141 63.1
TWI59G1446 Tripterygium wilfordii HOM05D007479 ORTHO05D009416 1.8e-43 179.9 141 63.1
Atru.chr5.1282 Acer truncatum HOM05D007479 ORTHO05D009416 2.3e-43 179.5 150 58.7
COL.COLO4_08032 Corchorus olitorius HOM05D007479 ORTHO05D009416 3.0e-43 179.1 167 54.5
Duzib133G1271 Durio zibethinus HOM05D007479 ORTHO05D009416 3.9e-43 178.7 134 63.4
TAR362G0341 Trochodendron aralioides HOM05D007479 ORTHO05D009416 5.1e-43 178.3 164 55.5
Gohir.D08G080200 Gossypium hirsutum HOM05D007479 ORTHO05D009416 3.3e-42 175.6 134 64.2
Gorai.004G085300 Gossypium raimondii HOM05D007479 ORTHO05D009416 3.3e-42 175.6 134 64.2
CSS0048836 Camellia sinensis var. sinensis HOM05D007479 ORTHO05D009416 5.6e-42 174.9 138 62.3
MD00G1056400 Malus domestica HOM05D007479 ORTHO05D009416 1.6e-41 173.3 141 61.0
GSVIVG01011009001 Vitis vinifera HOM05D007479 ORTHO05D009416 1.6e-41 173.3 128 66.4
Rhsim13G0017200 Rhododendron simsii HOM05D007479 ORTHO05D009416 3.7e-41 172.2 153 57.5
FvH4_2g24710 Fragaria vesca HOM05D007479 ORTHO05D009416 6.2e-41 171.4 134 64.2
FAN24G3263 Fragaria x ananassa HOM05D000112 ORTHO05D000564 6.2e-41 171.4 134 64.2
HanXRQChr11g0350171 Helianthus annuus HOM05D007479 ORTHO05D009416 6.2e-41 171.4 125 64.8
Aqoxy2G03133 Aquilegia oxysepala HOM05D007479 ORTHO05D009416 1.1e-40 170.6 119 65.5
FAN20G0962 Fragaria x ananassa HOM05D007479 ORTHO05D009416 1.1e-40 170.6 124 64.5
CiPaw.07G099900 Carya illinoinensis HOM05D007479 ORTHO05D009416 1.4e-40 170.2 113 71.7
MELO3C015894.2 Cucumis melo HOM05D007479 ORTHO05D009416 1.4e-40 170.2 159 55.3
Manes.01G213600 Manihot esculenta HOM05D007479 ORTHO05D009416 1.4e-40 170.2 123 66.7
RcHm_v2.0_Chr6g0292541 Rosa chinensis HOM05D007479 ORTHO05D009416 1.8e-40 169.9 109 72.5
Cfa006037 Carpinus fangiana HOM05D007479 ORTHO05D009416 2.4e-40 169.5 117 69.2
Gohir.A08G072000 Gossypium hirsutum HOM05D007479 ORTHO05D009416 2.4e-40 169.5 135 63.7
Oeu047908.1 Olea europaea HOM05D007479 ORTHO05D009416 4.0e-40 168.7 119 65.5
Actinidia00698 Actinidia chinensis HOM05D007479 ORTHO05D009416 5.3e-40 168.3 168 53.6
ClCG09G006510 Citrullus lanatus HOM05D007479 ORTHO05D009416 5.3e-40 168.3 111 69.4
Ciclev10022531m.g Citrus clementina HOM05D007479 ORTHO05D009416 5.3e-40 168.3 129 65.9
CsaV3_7G028280 Cucumis sativus L. HOM05D007479 ORTHO05D009416 5.3e-40 168.3 111 69.4
DCAR_002787 Daucus carota HOM05D007479 ORTHO05D009416 5.3e-40 168.3 109 72.5
QL12p023941 Quercus lobata HOM05D007479 ORTHO05D009416 5.3e-40 168.3 115 69.6
FAN27G0664 Fragaria x ananassa HOM05D007479 ORTHO05D009416 6.9e-40 167.9 124 63.7
Sed0025615 Sechium edule HOM05D007479 ORTHO05D009416 6.9e-40 167.9 111 69.4
PGR044G0517 Punica granatum HOM05D007479 ORTHO05D009416 9.0e-40 167.5 161 54.0
Sabra14G0101000 Salix brachista HOM05D007479 ORTHO05D009416 9.0e-40 167.5 183 50.8
MSTRG.12593 Avicennia marina HOM05D007479 ORTHO05D009416 1.2e-39 167.2 120 65.0
CANSAT25G0138 Cannabis sativa HOM05D007479 ORTHO05D009416 1.2e-39 167.2 177 49.7
Hma1.2p1_0209F.1_g089100 Hydrangea macrophylla HOM05D007479 ORTHO05D009416 2.0e-39 166.4 105 75.2
CDE09G0484 Ceratophyllum demersum HOM05D007479 ORTHO05D009416 2.6e-39 166.0 112 67.0
SGA_v2.0_scaffold172G39060 Striga asiatica HOM05D007479 ORTHO05D009416 4.5e-39 165.2 118 65.3
AUR62036657 Chenopodium quinoa HOM05D007479 ORTHO05D009416 7.6e-39 164.5 139 57.6
Prupe.8G252200 Prunus persica HOM05D007479 ORTHO05D009416 1.0e-38 164.1 105 72.4
Solyc06g084470.4 Solanum lycopersicum HOM05D007479 ORTHO05D009416 1.0e-38 164.1 116 63.8
Sopen06g035860 Solanum pennellii HOM05D007479 ORTHO05D009416 1.0e-38 164.1 116 63.8
EL10Ac7g17366 Beta vulgaris HOM05D007479 ORTHO05D009416 1.3e-38 163.7 120 65.8
Cc01_g20220 Coffea canephora HOM05D007479 ORTHO05D009416 2.2e-38 162.9 130 61.5
ECA236G2582 Erigeron canadensis HOM05D007479 ORTHO05D009416 2.2e-38 162.9 145 56.6
arahy.Tifrunner.gnm1.ann1.5G1G6M Arachis hypogaea HOM05D007479 ORTHO05D009416 2.9e-38 162.5 107 70.1
Nn3g21272 Nelumbo nucifera HOM05D007479 ORTHO05D009416 3.8e-38 162.2 102 71.6
Nitab4.5_0002093g0220 Nicotiana tabacum HOM05D007479 ORTHO05D009416 4.9e-38 161.8 117 65.8
Potri.014G135400 Populus trichocarpa HOM05D007479 ORTHO05D009416 6.5e-38 161.4 186 52.7
Eucgr.K03432 Eucalyptus grandis HOM05D007479 ORTHO05D009416 8.4e-38 161.0 107 72.0
Lj1g0024237 Lotus japonicus HOM05D007479 ORTHO05D009416 1.4e-37 160.2 147 55.1
Nitab4.5_0004150g0020 Nicotiana tabacum HOM05D007479 ORTHO05D009416 1.4e-37 160.2 178 51.1
Glyma.19G206000 Glycine max HOM05D007479 ORTHO05D009416 2.5e-37 159.5 107 68.2
Lalb_Chr18g0047491 Lupinus albus HOM05D007479 ORTHO05D009416 3.2e-37 159.1 122 62.3
MBI19_g32765_MAGBIO Magnolia biondii HOM05D007479 ORTHO05D009416 3.2e-37 159.1 108 67.6
Lsat_1_v5_gn_8_55221 Lactuca sativa HOM05D007479 ORTHO05D009416 4.2e-37 158.7 110 66.4
PGSC0003DMG400024042 Solanum tuberosum HOM05D007479 ORTHO05D009416 4.2e-37 158.7 112 65.2
PSO572G0003 Papaver somniferum HOM05D007479 ORTHO05D009416 5.5e-37 158.3 155 54.8
PSO832G0938 Papaver somniferum HOM05D007479 ORTHO05D009416 5.5e-37 158.3 155 54.8
PSO832G2794 Papaver somniferum HOM05D007479 ORTHO05D009416 5.5e-37 158.3 155 54.8
Phvul.001G201900 Phaseolus vulgaris HOM05D007479 ORTHO05D009416 7.1e-37 157.9 141 56.7
Ca_09112_v3 Cicer arietinum L. HOM05D000335 ORTHO05D001251 9.3e-37 157.5 108 65.7
VMungo1383G0484 Vigna mungo HOM05D007479 ORTHO05D009416 1.2e-36 157.1 107 66.4
Peaxi162Scf01039g00126 Petunia axillaris HOM05D007479 ORTHO05D009416 1.6e-36 156.8 123 58.5
HPP92_010636 Vanilla planifolia HOM05D007479 ORTHO05D009416 1.6e-36 156.8 110 64.5
Haze_04810 Corylus avellana HOM05D007479 ORTHO05D009416 2.7e-36 156.0 146 57.5
Sc17g0003550 Simmondsia chinensis HOM05D007479 ORTHO05D009416 2.7e-36 156.0 109 66.1
PSO210G3923 Papaver somniferum HOM05D007479 ORTHO05D009416 3.5e-36 155.6 110 67.3
Migut.N01396 Erythranthe guttata HOM05D007479 ORTHO05D009416 4.6e-36 155.2 104 68.3
Medtr7g107680 Medicago truncatula HOM05D007479 ORTHO05D009416 6.0e-36 154.8 108 65.7
Hund18029 Selenicereus undatus HOM05D007479 ORTHO05D009416 1.8e-35 153.3 148 52.7
TPR.G32316 Trifolium pratense HOM05D007479 ORTHO05D009416 1.8e-35 153.3 102 66.7
SalBow6G0786 Salvia bowleyana HOM05D007479 ORTHO05D009416 2.3e-35 152.9 116 64.7
Psat3g024840 Pisum sativum HOM05D007479 ORTHO05D009416 8.7e-35 151.0 103 67.0
Os12g0534100 Oryza sativa ssp. japonica HOM05D007479 ORTHO05D009416 1.5e-34 150.2 106 65.1
unitig_21.g20281 Utricularia gibba HOM05D007479 ORTHO05D009416 1.9e-34 149.8 143 53.1
ATR0706G261 Amborella trichopoda HOM05D001702 ORTHO05D001791 7.4e-34 147.9 119 59.7
vmacro02508 Vaccinium macrocarpon HOM05D007479 ORTHO05D009416 6.3e-33 144.8 222 39.2
Hma1.2p1_0209F.1_g089110 Hydrangea macrophylla HOM05D007479 ORTHO05D009416 4.1e-32 142.1 86 77.9
AUR62034613 Chenopodium quinoa HOM05D007479 ORTHO05D009416 5.3e-32 141.7 102 66.7
Lj2P1185T15 Lonicera japonica HOM05D007479 ORTHO05D009416 6.9e-32 141.4 86 74.4
SalBow8G4180 Salvia bowleyana HOM05D007479 ORTHO05D009416 2.1e-28 129.8 85 70.6
AagrBONN_evm.TU.Sc2ySwM_368.764 Anthoceros agrestis HOM05D007479 ORTHO05D009416 2.7e-28 129.4 117 50.4
Mapoly0029s0155 Marchantia polymorpha HOM05D007479 ORTHO05D009416 3.9e-27 125.6 154 43.5
Mapoly0275s0001 Marchantia polymorpha HOM05D007479 ORTHO05D009416 3.9e-27 125.6 154 43.5
Pp3c5_13320 Physcomitrium patens HOM05D007479 ORTHO05D009416 1.4e-24 117.1 132 43.9
CBR_g22325 Chara braunii HOM05D007479 ORTHO05D009416 5.9e-23 111.7 114 49.1
Dinv32992 Davidia involucrata HOM05D007479 ORTHO05D009416 8.0e-12 74.7 52 67.3


User provided reference genes

Program Settings