Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 8.1e-199 696.8 339 100.0
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 3.1e-182 641.7 339 92.9
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 9.0e-182 640.2 339 92.3
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 9.0e-182 640.2 339 92.3
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 1.0e-180 636.7 339 92.0
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 1.0e-180 636.7 339 92.0
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 2.9e-180 635.2 335 91.3
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 2.9e-180 635.2 335 91.3
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 3.7e-175 618.2 331 90.0
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 6.9e-174 614.0 339 87.6
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 3.4e-173 611.7 329 89.4
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 7.7e-165 583.9 334 84.1
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 1.2e-162 576.6 328 84.5
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 2.7e-162 575.5 329 83.0
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 6.7e-161 570.9 314 85.4
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 1.1e-160 570.1 316 84.5
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 4.4e-160 568.2 314 84.7
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 7.4e-160 567.4 326 81.9
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 9.7e-160 567.0 329 81.5
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 9.7e-160 567.0 314 84.7
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 9.7e-160 567.0 314 84.7
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 9.7e-160 567.0 320 83.1
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 1.3e-159 566.6 322 82.9
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 2.8e-159 565.5 324 82.4
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 3.7e-159 565.1 326 82.2
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.7e-159 565.1 314 84.4
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 3.7e-159 565.1 326 83.1
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 8.2e-159 563.9 320 84.1
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 8.2e-159 563.9 329 81.5
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 1.4e-158 563.1 327 82.0
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 3.1e-158 562.0 329 81.2
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 3.1e-158 562.0 326 81.6
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 9.1e-158 560.5 328 80.8
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 9.1e-158 560.5 322 82.9
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.6e-157 559.7 314 84.4
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 2.0e-157 559.3 314 83.8
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.6e-157 558.9 329 81.2
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 4.5e-157 558.1 313 83.7
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.0e-156 557.0 315 83.2
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 1.0e-156 557.0 327 80.4
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.3e-156 556.6 316 84.5
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 1.3e-156 556.6 337 78.9
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 1.7e-156 556.2 330 80.3
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.7e-156 556.2 336 80.1
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.2e-156 555.8 330 80.0
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.9e-156 555.4 318 82.1
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 3.8e-156 555.1 330 79.7
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 3.8e-156 555.1 324 80.9
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 6.5e-156 554.3 320 82.8
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 8.5e-156 553.9 320 82.2
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 8.5e-156 553.9 322 80.7
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 1.1e-155 553.5 330 80.9
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 1.5e-155 553.1 320 81.6
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.5e-155 553.1 328 80.5
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 1.9e-155 552.7 330 80.3
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 2.5e-155 552.4 316 82.3
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 2.5e-155 552.4 325 79.1
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 4.2e-155 551.6 319 82.4
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 4.2e-155 551.6 330 80.3
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 5.5e-155 551.2 327 80.1
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 7.2e-155 550.8 312 84.0
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 7.2e-155 550.8 330 79.7
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 2.7e-154 548.9 319 80.9
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 4.7e-154 548.1 329 79.9
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 1.0e-153 547.0 316 79.7
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 1.0e-153 547.0 316 79.7
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.4e-153 546.6 318 81.4
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 1.4e-153 546.6 316 81.6
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 3.0e-153 545.4 299 85.3
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 3.0e-153 545.4 314 81.2
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 4.0e-153 545.0 335 78.5
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 4.0e-153 545.0 316 81.3
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 4.0e-153 545.0 314 79.3
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 5.2e-153 544.7 333 76.6
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 1.2e-152 543.5 317 81.4
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.5e-152 543.1 324 78.1
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 2.0e-152 542.7 319 80.6
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 2.0e-152 542.7 330 77.6
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 3.3e-152 542.0 308 81.2
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 4.4e-152 541.6 320 80.6
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 9.7e-152 540.4 329 79.0
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 1.3e-151 540.0 326 78.2
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.7e-151 539.7 314 80.9
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 2.8e-151 538.9 329 78.1
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 2.8e-151 538.9 317 80.4
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 3.7e-151 538.5 316 80.1
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 3.7e-151 538.5 314 80.6
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 2.4e-150 535.8 313 79.6
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 3.1e-150 535.4 312 81.1
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 4.1e-150 535.0 328 78.4
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 7.0e-150 534.3 314 79.9
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 7.0e-150 534.3 315 80.6
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 9.1e-150 533.9 315 80.3
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 5.9e-149 531.2 316 79.1
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 1.0e-148 530.4 316 79.4
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 8.5e-148 527.3 317 80.4
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 4.2e-147 525.0 320 75.9
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 1.6e-146 523.1 377 69.5
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 3.6e-146 521.9 326 75.8
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 2.3e-145 519.2 314 77.7
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 6.8e-145 517.7 344 72.1
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 8.8e-145 517.3 329 76.0
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 2.0e-144 516.2 315 77.5
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 2.6e-144 515.8 329 75.7
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 3.1e-142 508.8 312 77.2
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.2e-141 506.9 318 73.6
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 2.8e-138 495.7 300 77.7
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 6.3e-135 484.6 303 73.6
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.1e-134 483.8 279 80.3
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 3.1e-134 482.3 280 82.1
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 5.6e-131 471.5 317 73.5
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 8.0e-130 467.6 276 81.2
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 3.0e-129 465.7 328 67.7
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 9.8e-128 460.7 310 69.0
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.1e-126 457.2 317 64.7
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.1e-126 457.2 317 64.7
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 5.0e-124 448.4 308 66.2
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.9e-123 446.4 305 65.6
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 2.8e-122 442.6 338 66.9
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 1.5e-120 436.8 250 80.0
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.5e-112 410.2 315 57.5
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 2.2e-103 379.8 229 78.6
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 3.3e-99 365.9 316 55.7
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 1.1e-91 340.9 246 65.4
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 3.4e-88 329.3 215 70.2
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 2.2e-87 326.6 317 50.5
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 1.1e-78 297.7 364 42.3
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 1.0e-68 264.6 365 38.6
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 9.1e-49 198.4 123 72.4
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 2.7e-29 133.7 89 74.2
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 6.8e-28 129.0 82 74.4
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.9e-22 110.9 84 67.9
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 3.3e-22 110.2 66 84.8
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 3.6e-13 80.1 47 78.7
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 6.8e-12 75.9 55 63.6
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 2.0e-11 74.3 41 80.5
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 5.8e-11 72.8 52 65.4
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 9.2e-09 65.5 42 69.0


User provided reference genes

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