Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01800 Brassica carinata HOM05D003373 ORTHO05D013173 1.1e-76 290.0 164 100.0
A09p26380 Brassica napus HOM05D003373 ORTHO05D013173 5.7e-57 224.6 166 80.1
BraA09t38212Z Brassica rapa HOM05D003373 ORTHO05D013173 5.7e-57 224.6 166 80.1
BcaC04g21286 Brassica carinata HOM05D003373 ORTHO05D013173 4.8e-56 221.5 166 80.7
C09p33540 Brassica napus HOM05D003373 ORTHO05D013173 9.1e-55 217.2 166 79.5
BolC9t56189H Brassica oleracea HOM05D003373 ORTHO05D013173 9.1e-55 217.2 166 79.5
C03p36240 Brassica napus HOM05D003373 ORTHO05D013173 2.8e-48 195.7 166 73.5
BolC3t15933H Brassica oleracea HOM05D003373 ORTHO05D013173 2.8e-48 195.7 166 73.5
A03p29950 Brassica napus HOM05D003373 ORTHO05D013173 5.9e-46 188.0 165 72.1
BraA03t12184Z Brassica rapa HOM05D003373 ORTHO05D013173 1.8e-39 166.4 166 67.5
AL3G40300 Arabidopsis lyrata HOM05D003373 ORTHO05D013173 1.6e-35 153.3 161 64.0
AT3G24690 Arabidopsis thaliana HOM05D003373 ORTHO05D013173 3.9e-29 132.1 160 57.5
Thhalv10029189m.g Eutrema salsugineum HOM05D003373 ORTHO05D013173 7.5e-25 117.9 158 53.2
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 6.8e-18 94.7 109 56.0
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 2.0e-17 93.2 115 53.9
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 2.0e-17 93.2 111 55.9
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 7.6e-17 91.3 94 60.6
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 1.3e-16 90.5 109 56.9
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 1.4e-15 87.0 74 68.9
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 2.4e-15 86.3 74 68.9
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 3.2e-15 85.9 74 68.9
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 5.4e-15 85.1 74 68.9
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 5.4e-15 85.1 78 64.1
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 5.4e-15 85.1 78 64.1
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 5.4e-15 85.1 78 64.1
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 7.1e-15 84.7 79 62.0
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 1.2e-14 84.0 109 53.2
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 1.6e-14 83.6 81 61.7
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 1.6e-14 83.6 102 57.8
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 1.6e-14 83.6 101 52.5
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 2.1e-14 83.2 73 60.3
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 2.7e-14 82.8 74 66.2
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.7e-14 82.8 103 51.5
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 3.5e-14 82.4 107 51.4
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 4.6e-14 82.0 102 56.9
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 4.6e-14 82.0 103 51.5
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 6.0e-14 81.6 100 53.0
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 6.0e-14 81.6 100 53.0
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 6.0e-14 81.6 73 58.9
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 7.8e-14 81.3 80 61.2
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 1.0e-13 80.9 103 53.4
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 1.0e-13 80.9 79 59.5
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 1.3e-13 80.5 108 49.1
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 2.3e-13 79.7 108 50.9
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.3e-13 79.7 103 50.5
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 2.3e-13 79.7 87 55.2
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 3.0e-13 79.3 108 52.8
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 3.0e-13 79.3 81 56.8
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 3.0e-13 79.3 112 49.1
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 3.0e-13 79.3 86 54.7
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 3.0e-13 79.3 112 51.8
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 3.0e-13 79.3 93 52.7
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 6.6e-13 78.2 85 56.5
BcaC05g26344 Brassica carinata HOM05D003373 ORTHO05D004419 6.6e-13 78.2 108 51.9
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 6.6e-13 78.2 80 56.2
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 8.7e-13 77.8 96 52.1
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 8.7e-13 77.8 79 58.2
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 8.7e-13 77.8 79 58.2
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 1.1e-12 77.4 82 52.4
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 1.1e-12 77.4 97 49.5
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 1.1e-12 77.4 79 55.7
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 1.1e-12 77.4 79 57.0
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 1.5e-12 77.0 85 55.3
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 1.5e-12 77.0 108 52.8
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 1.5e-12 77.0 79 54.4
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.5e-12 77.0 100 54.0
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 1.5e-12 77.0 93 52.7
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 1.9e-12 76.6 74 60.8
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 1.9e-12 76.6 122 45.9
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 1.9e-12 76.6 125 44.8
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 2.5e-12 76.3 80 52.5
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 2.5e-12 76.3 59 69.5
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 2.5e-12 76.3 59 66.1
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 3.3e-12 75.9 114 47.4
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 3.3e-12 75.9 117 47.0
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 3.3e-12 75.9 110 48.2
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 4.3e-12 75.5 117 42.7
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 4.3e-12 75.5 81 55.6
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 4.3e-12 75.5 95 51.6
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 4.3e-12 75.5 84 53.6
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 5.6e-12 75.1 93 51.6
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 7.3e-12 74.7 73 56.2
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 7.3e-12 74.7 117 46.2
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 9.6e-12 74.3 121 47.9
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 9.6e-12 74.3 96 51.0
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 9.6e-12 74.3 106 50.9
HPP92_019601 Vanilla planifolia HOM05D003373 ORTHO05D004419 9.6e-12 74.3 76 57.9
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 9.6e-12 74.3 76 57.9
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 1.2e-11 73.9 116 47.4
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 1.2e-11 73.9 78 56.4
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 1.2e-11 73.9 96 50.0
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 1.6e-11 73.6 73 58.9
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 2.1e-11 73.2 103 47.6
Haze_17060 Corylus avellana HOM05D003373 ORTHO05D004419 2.1e-11 73.2 86 51.2
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 2.1e-11 73.2 108 46.3
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.1e-11 73.2 81 54.3
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 2.1e-11 73.2 87 52.9
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 3.6e-11 72.4 88 53.4
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 3.6e-11 72.4 86 50.0
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 4.7e-11 72.0 88 52.3
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 4.7e-11 72.0 80 55.0
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 4.7e-11 72.0 103 42.7
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 4.7e-11 72.0 110 43.6
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 4.7e-11 72.0 59 64.4
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 4.7e-11 72.0 97 50.5
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 6.2e-11 71.6 61 62.3
VMungo0540G1512 Vigna mungo HOM05D003373 ORTHO05D013173 6.2e-11 71.6 59 64.4
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 8.1e-11 71.2 79 54.4
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 8.1e-11 71.2 101 47.5
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 1.1e-10 70.9 74 55.4
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.1e-10 70.9 74 55.4
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 1.1e-10 70.9 79 54.4
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 1.1e-10 70.9 59 62.7
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 1.1e-10 70.9 126 45.2
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.1e-10 70.9 74 52.7
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 1.4e-10 70.5 122 45.1
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 1.4e-10 70.5 123 43.9
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 1.4e-10 70.5 92 50.0
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 1.4e-10 70.5 61 65.6
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 1.4e-10 70.5 88 50.0
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 1.4e-10 70.5 102 46.1
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.8e-10 70.1 74 55.4
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 2.4e-10 69.7 119 40.3
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 2.4e-10 69.7 126 42.9
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 2.4e-10 69.7 92 48.9
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 2.4e-10 69.7 97 45.4
TAR622G0593 Trochodendron aralioides HOM05D003373 ORTHO05D004419 2.4e-10 69.7 119 39.5
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 3.1e-10 69.3 74 54.1
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 3.1e-10 69.3 99 46.5
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 3.1e-10 69.3 100 46.0
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 3.1e-10 69.3 59 59.3
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 4.0e-10 68.9 120 40.0
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 5.2e-10 68.6 86 50.0
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 5.2e-10 68.6 103 46.6
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 5.2e-10 68.6 117 41.9
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 5.2e-10 68.6 117 41.9
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 5.2e-10 68.6 102 44.1
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 6.9e-10 68.2 72 52.8
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 9.0e-10 67.8 119 42.0
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 9.0e-10 67.8 67 56.7
PGSC0003DMG400010979 Solanum tuberosum HOM05D003373 ORTHO05D013173 9.0e-10 67.8 59 59.3
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 1.2e-09 67.4 97 48.5
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 1.5e-09 67.0 110 43.6
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 1.5e-09 67.0 123 45.5
VMungo0464G1165 Vigna mungo HOM05D003373 ORTHO05D004419 1.5e-09 67.0 59 61.0
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 2.6e-09 66.2 98 46.9
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 2.6e-09 66.2 113 44.2
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 2.6e-09 66.2 120 41.7
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 3.4e-09 65.9 109 42.2
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 3.4e-09 65.9 86 47.7
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 4.4e-09 65.5 103 45.6
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 4.4e-09 65.5 103 45.6
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 7.6e-09 64.7 106 41.5
BcaB01g02599 Brassica carinata HOM05D003373 ORTHO05D013173 9.9e-09 64.3 67 64.2
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 9.9e-09 64.3 91 48.4
SalBow3G2377 Salvia bowleyana HOM05D003373 ORTHO05D004419 9.9e-09 64.3 73 52.1
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 1.3e-08 63.9 133 36.1
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 1.3e-08 63.9 103 44.7
Lalb_Chr17g0340241 Lupinus albus HOM05D003373 ORTHO05D004419 1.7e-08 63.5 79 49.4
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 2.9e-08 62.8 116 44.0
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 6.4e-08 61.6 102 41.2
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 8.4e-08 61.2 59 50.8
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 8.4e-08 61.2 52 57.7
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 1.1e-07 60.8 117 41.0
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 2.4e-07 59.7 114 36.8
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 7.1e-07 58.2 128 31.2
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.1e-06 56.6 111 35.1
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.1e-06 56.6 111 35.1


User provided reference genes

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