Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 4.7e-97 357.8 179 100.0
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 3.2e-93 345.1 179 96.6
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 8.6e-91 337.0 175 96.6
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 4.3e-90 334.7 175 96.0
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 4.3e-90 334.7 180 93.9
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.1e-89 332.4 179 92.2
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 1.1e-88 330.1 179 92.7
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 6.8e-88 327.4 170 96.5
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.0e-87 325.9 180 92.2
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 3.4e-87 325.1 170 95.9
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 4.4e-87 324.7 179 90.5
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 6.4e-86 320.9 184 89.1
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 2.1e-84 315.8 185 87.0
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 5.1e-83 311.2 179 85.5
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 1.1e-82 310.1 189 85.2
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 1.2e-76 290.0 180 80.0
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 2.1e-76 289.3 180 82.2
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 2.1e-76 289.3 180 82.2
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 2.7e-76 288.9 180 79.4
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 2.7e-76 288.9 180 81.1
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.3e-75 286.6 180 77.8
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 2.3e-75 285.8 179 78.8
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.0e-75 285.4 179 81.0
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 3.9e-75 285.0 176 81.2
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 3.9e-75 285.0 179 78.8
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 3.9e-75 285.0 178 79.8
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 5.1e-75 284.6 179 79.9
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 6.6e-75 284.3 179 77.7
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 6.6e-75 284.3 176 80.7
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 8.7e-75 283.9 178 80.3
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 8.7e-75 283.9 178 80.9
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 8.7e-75 283.9 178 80.9
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.1e-74 283.5 170 85.9
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.1e-74 283.5 179 82.7
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 1.1e-74 283.5 179 81.6
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 1.5e-74 283.1 179 80.4
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.9e-74 282.7 179 81.0
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 2.5e-74 282.3 180 77.2
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 2.5e-74 282.3 182 77.5
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 4.3e-74 281.6 171 82.5
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 4.3e-74 281.6 179 79.9
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 4.3e-74 281.6 179 78.2
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.3e-74 280.8 179 81.6
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 9.6e-74 280.4 180 78.9
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.3e-73 280.0 179 81.6
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.3e-73 280.0 179 81.6
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 4.8e-73 278.1 160 84.4
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 6.2e-73 277.7 179 77.7
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 8.1e-73 277.3 179 78.2
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 1.1e-72 276.9 171 81.9
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 2.4e-72 275.8 171 80.7
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.4e-72 275.8 171 81.3
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 2.4e-72 275.8 179 79.3
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 5.3e-72 274.6 179 76.0
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 9.0e-72 273.9 161 83.9
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 9.0e-72 273.9 161 84.5
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.5e-71 273.1 179 75.4
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 3.4e-71 271.9 160 82.5
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 4.5e-71 271.6 177 75.7
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 5.8e-71 271.2 179 76.5
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 7.6e-71 270.8 159 83.0
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 9.9e-71 270.4 176 75.0
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 9.9e-71 270.4 171 78.4
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 1.3e-70 270.0 158 84.8
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.7e-70 269.6 179 77.1
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 2.2e-70 269.2 161 83.2
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 2.9e-70 268.9 173 76.3
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 3.8e-70 268.5 202 70.3
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 3.8e-70 268.5 158 82.3
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 4.9e-70 268.1 161 83.2
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 6.4e-70 267.7 159 83.6
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 6.4e-70 267.7 179 74.9
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 8.4e-70 267.3 159 81.8
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.1e-69 266.9 171 78.9
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 1.1e-69 266.9 183 73.2
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 1.4e-69 266.5 161 81.4
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-69 266.5 176 74.4
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.9e-69 266.2 179 72.1
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 2.4e-69 265.8 160 80.6
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 4.2e-69 265.0 179 72.1
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 5.4e-69 264.6 178 74.2
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 1.6e-68 263.1 158 81.0
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.6e-68 263.1 161 79.5
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 2.1e-68 262.7 178 73.0
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 3.5e-68 261.9 174 73.0
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 3.5e-68 261.9 177 72.9
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 4.6e-68 261.5 159 79.2
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 6.0e-68 261.2 159 80.5
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 7.9e-68 260.8 179 74.3
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 7.9e-68 260.8 159 81.8
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 7.9e-68 260.8 159 81.8
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 1.3e-67 260.0 178 71.9
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 1.8e-67 259.6 171 77.8
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 6.7e-67 257.7 172 75.0
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 1.1e-66 256.9 180 71.1
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 1.5e-66 256.5 171 76.0
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 2.5e-66 255.8 176 71.0
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 4.3e-66 255.0 180 71.1
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 4.3e-66 255.0 145 86.2
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 5.6e-66 254.6 153 81.7
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 2.1e-65 252.7 146 84.2
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.8e-65 252.3 145 84.8
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 2.6e-63 245.7 137 88.3
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 3.4e-63 245.4 145 82.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 4.5e-63 245.0 176 67.6
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 7.6e-63 244.2 168 72.6
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 7.6e-63 244.2 158 75.3
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 2.2e-62 242.7 140 84.3
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.8e-62 241.9 144 81.2
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-61 240.4 174 69.0
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.9e-61 239.6 148 80.4
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.5e-61 239.2 142 81.0
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.1e-58 230.3 137 83.2
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 3.7e-57 225.3 175 68.0
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 4.8e-57 224.9 168 67.9
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.3e-56 221.5 179 67.6
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 8.4e-54 214.2 135 80.0
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 5.1e-51 204.9 168 57.7
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.1e-50 203.8 176 63.6
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 1.6e-49 199.9 180 53.9
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 2.2e-49 199.5 164 64.0
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 7.7e-47 191.0 110 84.5
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.7e-46 189.9 117 76.9
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 2.9e-46 189.1 110 85.5
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 2.7e-44 182.6 117 81.2
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 3.0e-43 179.1 143 65.7
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 1.7e-41 173.3 113 76.1
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 4.8e-41 171.8 127 66.9
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.3e-38 163.7 152 52.6
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.6e-36 156.8 137 61.3
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 6.1e-36 154.8 100 74.0
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.1e-36 154.8 83 91.6
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.7e-35 151.4 116 69.0
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.0e-34 149.8 128 60.9
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.5e-31 140.2 129 58.1
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.6e-31 139.4 83 81.9
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.0e-30 137.5 83 84.3
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.8e-30 135.6 68 95.6
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 1.9e-29 133.3 89 75.3
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 5.5e-29 131.7 187 44.9
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.1e-26 124.0 156 47.4
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 1.1e-24 117.5 66 87.9
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 2.6e-23 112.8 84 67.9
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 6.5e-22 108.2 58 93.1
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 8.5e-22 107.8 120 55.0
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.2e-21 105.9 85 68.2
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 1.2e-20 104.0 65 76.9
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.7e-17 93.6 52 84.6
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 1.2e-15 87.4 58 67.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.3e-06 57.4 36 75.0


User provided reference genes

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