Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01780 Brassica carinata HOM05D001658 ORTHO05D001406 2.9e-67 258.5 134 100.0
C07p19440 Brassica napus HOM05D001658 ORTHO05D001406 5.2e-32 141.4 97 77.3
BolC7t42462H Brassica oleracea HOM05D001658 ORTHO05D001406 5.2e-32 141.4 97 77.3
BcaB03g14072 Brassica carinata HOM05D001658 ORTHO05D001406 8.9e-32 140.6 97 77.3
BcaB03g14073 Brassica carinata HOM05D001658 ORTHO05D001406 8.9e-32 140.6 97 77.3
BcaC06g35138 Brassica carinata HOM05D001658 ORTHO05D001406 8.9e-32 140.6 97 77.3
Sp1g22200 Schrenkiella parvula HOM05D001658 ORTHO05D001406 1.5e-31 139.8 96 78.1
BcaB03g14075 Brassica carinata HOM05D001658 ORTHO05D001406 9.8e-31 137.1 97 75.3
BraA07t29070Z Brassica rapa HOM05D001658 ORTHO05D001406 1.3e-30 136.7 115 67.8
Thhalv10007938m.g Eutrema salsugineum HOM05D001658 ORTHO05D001406 3.7e-30 135.2 103 71.8
A07p12990 Brassica napus HOM05D001658 ORTHO05D001406 7.0e-29 131.0 115 67.0
BcaC05g26411 Brassica carinata HOM05D001658 ORTHO05D001406 8.6e-27 124.0 95 68.4
BolC5t31180H Brassica oleracea HOM05D001658 ORTHO05D001406 8.6e-27 124.0 95 68.4
C05p24460 Brassica napus HOM05D001658 ORTHO05D001406 1.1e-26 123.6 95 68.4
Carub.0001s2445 Capsella rubella HOM05D001658 ORTHO05D001406 8.1e-25 117.5 83 72.3
BcaB03g11997 Brassica carinata HOM05D001658 ORTHO05D001406 1.5e-23 113.2 98 61.2
BcaC01g01747 Brassica carinata HOM05D001658 ORTHO05D001406 4.9e-22 108.2 97 64.9
C03p72350 Brassica napus HOM05D000263 ORTHO05D014482 4.9e-22 108.2 97 64.9
BolC3t19529H Brassica oleracea HOM05D000263 ORTHO05D014482 4.9e-22 108.2 97 64.9
AL1G39140 Arabidopsis lyrata HOM05D001658 ORTHO05D001406 8.3e-22 107.5 82 68.3
AT1G26590 Arabidopsis thaliana HOM05D001658 ORTHO05D001406 1.1e-21 107.1 77 71.4
A09p39980 Brassica napus HOM05D001658 ORTHO05D001406 4.1e-21 105.1 98 61.2
BraA09t39496Z Brassica rapa HOM05D001658 ORTHO05D001406 3.5e-20 102.1 98 60.2
A08p27400 Brassica napus HOM05D001658 ORTHO05D001406 4.6e-20 101.7 98 62.2
BraA08t34681Z Brassica rapa HOM05D001658 ORTHO05D001406 4.6e-20 101.7 98 62.2
Carub.0001s2444 Capsella rubella HOM05D001658 ORTHO05D001406 5.1e-19 98.2 76 67.1
AT1G26610 Arabidopsis thaliana HOM05D001658 ORTHO05D001406 2.5e-18 95.9 118 51.7
Carub.0001s2442 Capsella rubella HOM05D001658 ORTHO05D001406 8.1e-17 90.9 104 53.8
Sp1g22190 Schrenkiella parvula HOM05D001658 ORTHO05D001406 5.2e-16 88.2 128 48.4
BcaB03g11999 Brassica carinata HOM05D001658 ORTHO05D001406 6.8e-16 87.8 82 61.0
CARHR025360 Cardamine hirsuta HOM05D001658 ORTHO05D001406 6.8e-16 87.8 91 58.2
AL1G39120 Arabidopsis lyrata HOM05D001658 ORTHO05D001406 1.5e-15 86.7 120 48.3
C05p24440 Brassica napus HOM05D001658 ORTHO05D001406 2.6e-15 85.9 125 44.0
BolC5t31177H Brassica oleracea HOM05D001658 ORTHO05D001406 2.6e-15 85.9 125 44.0
A09p40000 Brassica napus HOM05D001658 ORTHO05D001406 9.9e-15 84.0 126 44.4
BraA09t39498Z Brassica rapa HOM05D001658 ORTHO05D001406 9.9e-15 84.0 126 44.4
Thhalv10009600m.g Eutrema salsugineum HOM05D001658 ORTHO05D001406 9.9e-15 84.0 85 58.8
BcaB03g14077 Brassica carinata HOM05D001658 ORTHO05D001406 1.9e-13 79.7 86 54.7
BcaC01g01750 Brassica carinata HOM05D001658 ORTHO05D001406 1.6e-12 76.6 130 42.3
C03p72310 Brassica napus HOM05D001658 ORTHO05D001406 1.6e-12 76.6 130 42.3
A07p13010 Brassica napus HOM05D001658 ORTHO05D001406 2.7e-12 75.9 130 40.8
BraA07t29072Z Brassica rapa HOM05D001658 ORTHO05D001406 2.7e-12 75.9 130 40.8
A08p27420 Brassica napus HOM05D001658 ORTHO05D001406 6.0e-12 74.7 128 45.3
BcaC06g35136 Brassica carinata HOM05D001658 ORTHO05D001406 7.8e-12 74.3 106 44.3
C07p19460 Brassica napus HOM05D001658 ORTHO05D001406 7.8e-12 74.3 106 44.3
BolC7t42465H Brassica oleracea HOM05D001658 ORTHO05D001406 7.8e-12 74.3 106 44.3
CARHR025380 Cardamine hirsuta HOM05D001658 ORTHO05D001406 3.0e-11 72.4 86 54.7
THA.LOC104822895 Tarenaya hassleriana HOM05D001658 ORTHO05D001406 6.6e-11 71.2 108 46.3
Aa31LG7G8500 Aethionema arabicum HOM05D001658 ORTHO05D001406 4.3e-10 68.6 108 41.7
THA.LOC104805032 Tarenaya hassleriana HOM05D001658 ORTHO05D001406 5.6e-10 68.2 141 39.7
Aa31LG7G8490 Aethionema arabicum HOM05D001658 ORTHO05D001406 7.3e-10 67.8 102 40.2
BcaC05g26407 Brassica carinata HOM05D001658 ORTHO05D001406 1.2e-09 67.0 91 41.8
THA.LOC104808577 Tarenaya hassleriana HOM05D001658 ORTHO05D001406 1.2e-09 67.0 106 41.5
CiPaw.05G126700 Carya illinoinensis HOM05D001658 ORTHO05D001406 4.7e-09 65.1 44 63.6
FvH4_4g30350 Fragaria vesca HOM05D001658 ORTHO05D001406 2.4e-08 62.8 35 74.3
FAN12G4077 Fragaria x ananassa HOM05D001658 ORTHO05D001406 2.4e-08 62.8 35 74.3
FAN22G1484 Fragaria x ananassa HOM05D001658 ORTHO05D001406 2.4e-08 62.8 35 74.3
RcHm_v2.0_Chr4g0438641 Rosa chinensis HOM05D001658 ORTHO05D001406 2.4e-08 62.8 35 74.3
CiPaw.06G091100 Carya illinoinensis HOM05D001658 ORTHO05D001406 4.0e-08 62.0 47 57.4
Cfa008895 Carpinus fangiana HOM05D001658 ORTHO05D001406 5.2e-08 61.6 34 73.5
Haze_11926 Corylus avellana HOM05D001658 ORTHO05D001406 5.2e-08 61.6 34 73.5
FAN07G1897 Fragaria x ananassa HOM05D001658 ORTHO05D001406 5.2e-08 61.6 35 74.3
Prupe.1G283600 Prunus persica HOM05D001658 ORTHO05D001406 5.2e-08 61.6 35 71.4
Medtr5g043930 Medicago truncatula HOM05D001658 ORTHO05D001406 6.8e-08 61.2 128 36.7
Duzib248G0531 Durio zibethinus HOM05D001658 ORTHO05D001406 8.9e-08 60.8 85 43.5
Duzib251G0451 Durio zibethinus HOM05D001658 ORTHO05D001406 8.9e-08 60.8 63 47.6
Lj2g0006470 Lotus japonicus HOM05D001658 ORTHO05D001406 8.9e-08 60.8 85 42.4
arahy.Tifrunner.gnm1.ann1.YM25EH Arachis hypogaea HOM05D001658 ORTHO05D001406 1.2e-07 60.5 52 53.8
CANSAT64G2408 Cannabis sativa HOM05D001658 ORTHO05D001406 1.2e-07 60.5 35 68.6
FAN17G1222 Fragaria x ananassa HOM05D001658 ORTHO05D001406 1.2e-07 60.5 35 71.4
CANSAT80G2872 Cannabis sativa HOM05D001658 ORTHO05D001406 1.5e-07 60.1 69 47.8
Cfa019302 Carpinus fangiana HOM05D001658 ORTHO05D001406 1.5e-07 60.1 87 37.9
MD13G1064600 Malus domestica HOM05D001658 ORTHO05D001406 1.5e-07 60.1 35 71.4
Atru.chr11.1665 Acer truncatum HOM05D001658 ORTHO05D001406 2.0e-07 59.7 71 50.7
Duzib084G1412 Durio zibethinus HOM05D001658 ORTHO05D001406 2.0e-07 59.7 64 51.6
HanXRQChr12g0362971 Helianthus annuus HOM05D001658 ORTHO05D001406 2.0e-07 59.7 63 49.2
Nn3g17399 Nelumbo nucifera HOM05D001658 ORTHO05D001406 2.0e-07 59.7 75 46.7
TWI31G0488 Tripterygium wilfordii HOM05D001658 ORTHO05D001406 2.6e-07 59.3 35 65.7
QL03p071224 Quercus lobata HOM05D001658 ORTHO05D001406 3.4e-07 58.9 50 60.0
arahy.Tifrunner.gnm1.ann1.WCFZ4Q Arachis hypogaea HOM05D001658 ORTHO05D001406 4.4e-07 58.5 51 52.9
Haze_07685 Corylus avellana HOM05D001658 ORTHO05D001406 4.4e-07 58.5 87 36.8
DCAR_030031 Daucus carota HOM05D001658 ORTHO05D001406 4.4e-07 58.5 34 67.6
Glyma.02G115300 Glycine max HOM05D001658 ORTHO05D001406 4.4e-07 58.5 127 38.6
Rhsim12G0135000 Rhododendron simsii HOM05D000773 ORTHO05D000588 4.4e-07 58.5 40 60.0
TAR629G0024 Trochodendron aralioides HOM05D001658 ORTHO05D001406 4.4e-07 58.5 91 41.8
ECA234G3829 Erigeron canadensis HOM05D001658 ORTHO05D001406 5.8e-07 58.2 29 79.3
Glyma.20G026600 Glycine max HOM05D001658 ORTHO05D001406 5.8e-07 58.2 41 61.0
COL.COLO4_27912 Corchorus olitorius HOM05D001658 ORTHO05D001406 7.6e-07 57.8 65 47.7
Lj6P781T18 Lonicera japonica HOM05D001658 ORTHO05D001406 7.6e-07 57.8 82 45.1
Ciclev10031223m.g Citrus clementina HOM05D001658 ORTHO05D001406 9.9e-07 57.4 80 42.5
Gohir.A05G306300 Gossypium hirsutum HOM05D001658 ORTHO05D001406 9.9e-07 57.4 90 40.0
Gorai.009G326300 Gossypium raimondii HOM05D001658 ORTHO05D001406 9.9e-07 57.4 90 40.0
HanXRQChr08g0211551 Helianthus annuus HOM05D001658 ORTHO05D001406 9.9e-07 57.4 57 49.1
Nitab4.5_0006673g0080 Nicotiana tabacum HOM05D000174 ORTHO05D001406 9.9e-07 57.4 78 38.5
PGR119G0590 Punica granatum HOM05D001658 ORTHO05D001406 9.9e-07 57.4 89 42.7
CSS0006199 Camellia sinensis var. sinensis HOM05D001658 ORTHO05D001406 1.3e-06 57.0 62 43.5
Gohir.A03G069200 Gossypium hirsutum HOM05D001658 ORTHO05D001406 1.3e-06 57.0 44 59.1
MBI19_g45961_MAGBIO Magnolia biondii HOM05D001658 ORTHO05D001406 1.3e-06 57.0 34 70.6
Rhsim01G0135400 Rhododendron simsii HOM05D001867 ORTHO05D001708 1.3e-06 57.0 89 40.4
COL.COLO4_22218 Corchorus olitorius HOM05D001658 ORTHO05D001406 1.7e-06 56.6 70 45.7
Gohir.A12G162000 Gossypium hirsutum HOM05D001658 ORTHO05D001406 1.7e-06 56.6 82 41.5
Gohir.D12G165300 Gossypium hirsutum HOM05D001658 ORTHO05D001406 1.7e-06 56.6 81 42.0
Gorai.008G178000 Gossypium raimondii HOM05D001658 ORTHO05D001406 1.7e-06 56.6 78 43.6
Lalb_Chr05g0220031 Lupinus albus HOM05D001658 ORTHO05D001406 2.2e-06 56.2 73 46.6
Phvul.002G082200 Phaseolus vulgaris HOM05D001658 ORTHO05D001406 2.2e-06 56.2 130 34.6
Thecc.02G334000 Theobroma cacao HOM05D001658 ORTHO05D001406 2.2e-06 56.2 86 41.9
CAN.G616.7 Capsicum annuum HOM05D001658 ORTHO05D001406 2.9e-06 55.8 102 38.2
FAN13G0498 Fragaria x ananassa HOM05D001658 ORTHO05D001406 2.9e-06 55.8 58 48.3
HanXRQChr16g0529501 Helianthus annuus HOM05D001658 ORTHO05D001406 2.9e-06 55.8 29 72.4
Hma1.2p1_0322F.1_g124870 Hydrangea macrophylla HOM05D001658 ORTHO05D001406 2.9e-06 55.8 87 41.4
Cpa.g.c33076 Carica papaya HOM05D001658 ORTHO05D001406 3.8e-06 55.5 57 52.6
Ca_21788_v3 Cicer arietinum L. HOM05D001658 ORTHO05D001406 3.8e-06 55.5 28 82.1
Dinv34085 Davidia involucrata HOM05D001658 ORTHO05D001406 3.8e-06 55.5 34 70.6
Glyma.01G056900 Glycine max HOM05D001658 ORTHO05D001406 3.8e-06 55.5 42 57.1
Gohir.D05G306300 Gossypium hirsutum HOM05D001658 ORTHO05D001406 3.8e-06 55.5 90 40.0
Nitab4.5_0005493g0010 Nicotiana tabacum HOM05D001658 ORTHO05D001406 3.8e-06 55.5 129 31.0
Sopen01g006020 Solanum pennellii HOM05D001658 ORTHO05D001406 3.8e-06 55.5 44 52.3
VMungo1215G1227 Vigna mungo HOM05D001658 ORTHO05D001406 3.8e-06 55.5 131 37.4
VMungo1215G1529 Vigna mungo HOM05D001658 ORTHO05D001406 3.8e-06 55.5 35 68.6
CSS0021009 Camellia sinensis var. sinensis HOM05D001658 ORTHO05D001406 4.9e-06 55.1 35 65.7
Ca_04937_v3 Cicer arietinum L. HOM05D001658 ORTHO05D001406 4.9e-06 55.1 114 32.5
Duzib268G1525 Durio zibethinus HOM05D001658 ORTHO05D001406 4.9e-06 55.1 56 46.4
Eucgr.B03164 Eucalyptus grandis HOM05D001658 ORTHO05D001406 4.9e-06 55.1 36 63.9
Lalb_Chr13g0302941 Lupinus albus HOM05D001658 ORTHO05D001406 4.9e-06 55.1 35 65.7
Phvul.009G190665 Phaseolus vulgaris HOM05D001658 ORTHO05D001406 4.9e-06 55.1 35 65.7
Phvul.L001618 Phaseolus vulgaris HOM05D001658 ORTHO05D001406 4.9e-06 55.1 29 79.3
Actinidia32294 Actinidia chinensis HOM05D001658 ORTHO05D001406 6.4e-06 54.7 92 41.3
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 6.4e-06 54.7 69 44.9
Eucgr.K02500 Eucalyptus grandis HOM05D001658 ORTHO05D001406 6.4e-06 54.7 52 51.9
Gohir.D03G095700 Gossypium hirsutum HOM05D001658 ORTHO05D001406 6.4e-06 54.7 44 56.8
Gorai.003G100400 Gossypium raimondii HOM05D001658 ORTHO05D001406 6.4e-06 54.7 44 56.8
Lalb_Chr07g0178261 Lupinus albus HOM05D001658 ORTHO05D001406 6.4e-06 54.7 29 79.3
Lalb_Chr16g0385601 Lupinus albus HOM05D001658 ORTHO05D001406 6.4e-06 54.7 108 38.9
Nitab4.5_0002881g0100 Nicotiana tabacum HOM05D001658 ORTHO05D001406 6.4e-06 54.7 50 52.0
Nitab4.5_0004511g0050 Nicotiana tabacum HOM05D001658 ORTHO05D001406 6.4e-06 54.7 50 52.0
Oeu038368.1 Olea europaea HOM05D001658 ORTHO05D001406 6.4e-06 54.7 27 85.2
Solyc01g010410.3 Solanum lycopersicum HOM05D001658 ORTHO05D001406 6.4e-06 54.7 34 58.8
Dinv38789 Davidia involucrata HOM05D000773 ORTHO05D000588 8.4e-06 54.3 84 41.7
HanXRQChr12g0379521 Helianthus annuus HOM05D001658 ORTHO05D001406 8.4e-06 54.3 86 41.9
Lj7P537T47 Lonicera japonica HOM05D001867 ORTHO05D001708 8.4e-06 54.3 96 32.3
Lalb_Chr10g0098681 Lupinus albus HOM05D001658 ORTHO05D001406 8.4e-06 54.3 115 36.5
MD16G1063100 Malus domestica HOM05D001658 ORTHO05D001406 8.4e-06 54.3 83 43.4
Manes.06G087200 Manihot esculenta HOM05D001658 ORTHO05D001406 8.4e-06 54.3 94 43.6
Peaxi162Scf00166g00065 Petunia axillaris HOM05D001658 ORTHO05D001406 8.4e-06 54.3 27 81.5
Phvul.002G168500 Phaseolus vulgaris HOM05D001658 ORTHO05D001406 8.4e-06 54.3 92 39.1
RcHm_v2.0_Chr7g0182641 Rosa chinensis HOM05D001658 ORTHO05D001406 8.4e-06 54.3 74 44.6
TWI79G0022 Tripterygium wilfordii HOM05D001658 ORTHO05D001406 8.4e-06 54.3 35 62.9


User provided reference genes

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