Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 4.3e-101 371.3 187 100.0
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 5.3e-75 284.6 175 85.1
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 5.3e-75 284.6 175 85.1
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 2.6e-74 282.3 169 87.6
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 1.0e-73 280.4 176 84.7
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 1.0e-73 280.4 176 84.7
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 3.2e-72 275.4 171 82.5
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 4.7e-71 271.6 171 80.1
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 4.7e-71 271.6 171 80.1
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 7.9e-71 270.8 171 78.9
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 2.3e-70 269.2 170 80.0
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 3.9e-70 268.5 171 79.5
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 6.3e-68 261.2 171 77.8
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 1.4e-62 243.4 170 76.5
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 3.0e-62 242.3 170 75.3
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 4.0e-62 241.9 170 74.7
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 6.3e-60 234.6 170 72.9
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 2.6e-58 229.2 174 70.7
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 2.6e-58 229.2 170 71.8
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 7.7e-42 174.5 115 79.1
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 1.3e-41 173.7 171 56.7
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 2.3e-38 162.9 172 54.1
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 2.0e-34 149.8 180 46.1
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 7.8e-34 147.9 181 45.9
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 2.3e-33 146.4 180 44.4
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 3.9e-33 145.6 173 47.4
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 6.6e-33 144.8 178 46.1
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 8.6e-33 144.4 178 44.9
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 8.6e-33 144.4 181 43.6
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 8.6e-33 144.4 180 44.4
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 2.5e-32 142.9 176 43.8
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 3.3e-32 142.5 173 45.1
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 4.3e-32 142.1 176 43.8
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 9.5e-32 141.0 181 45.3
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 1.2e-31 140.6 177 45.2
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 1.6e-31 140.2 178 43.8
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 4.7e-31 138.7 175 44.6
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 4.7e-31 138.7 174 44.8
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 6.2e-31 138.3 174 43.7
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 1.4e-30 137.1 179 46.4
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 1.8e-30 136.7 179 44.7
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 4.0e-30 135.6 179 43.0
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 5.2e-30 135.2 174 43.7
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 5.2e-30 135.2 174 43.7
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 1.2e-29 134.0 173 43.4
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 1.5e-29 133.7 176 44.3
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 1.5e-29 133.7 172 44.8
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 2.6e-29 132.9 177 44.6
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 2.6e-29 132.9 174 44.3
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 2.6e-29 132.9 174 44.3
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 3.4e-29 132.5 181 43.6
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 3.4e-29 132.5 176 44.3
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 4.4e-29 132.1 177 44.1
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 5.8e-29 131.7 182 42.9
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 9.8e-29 131.0 171 43.9
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 9.8e-29 131.0 173 44.5
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.7e-28 130.2 176 43.2
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 1.7e-28 130.2 183 42.6
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 2.2e-28 129.8 176 43.8
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 2.2e-28 129.8 173 43.4
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 2.9e-28 129.4 176 46.0
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 3.7e-28 129.0 181 43.1
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 3.7e-28 129.0 180 41.7
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 6.4e-28 128.3 176 43.8
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 8.3e-28 127.9 183 41.5
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 1.1e-27 127.5 180 42.2
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 1.1e-27 127.5 175 41.7
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 1.4e-27 127.1 173 42.8
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.4e-27 127.1 183 43.7
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 1.4e-27 127.1 175 45.1
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 2.4e-27 126.3 175 41.1
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 3.2e-27 125.9 183 41.0
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 5.4e-27 125.2 177 41.2
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 5.4e-27 125.2 177 41.2
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 7.0e-27 124.8 171 43.9
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 7.0e-27 124.8 177 40.1
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 7.0e-27 124.8 177 40.7
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 9.2e-27 124.4 175 42.3
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 9.2e-27 124.4 171 42.7
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 1.2e-26 124.0 177 40.1
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 1.6e-26 123.6 169 42.6
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.0e-26 123.2 177 40.7
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 2.7e-26 122.9 177 42.4
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 3.5e-26 122.5 180 41.7
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 3.5e-26 122.5 170 42.4
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 3.5e-26 122.5 173 40.5
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 4.6e-26 122.1 175 42.3
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 4.6e-26 122.1 177 40.7
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 4.6e-26 122.1 177 40.7
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 4.6e-26 122.1 180 40.6
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 6.0e-26 121.7 177 40.7
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 6.0e-26 121.7 184 39.7
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 1.0e-25 120.9 175 42.9
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 1.0e-25 120.9 177 41.2
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 1.3e-25 120.6 173 39.9
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.7e-25 120.2 175 41.7
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 1.7e-25 120.2 174 42.0
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 1.7e-25 120.2 174 40.2
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 2.3e-25 119.8 170 41.2
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 2.3e-25 119.8 181 40.3
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 2.3e-25 119.8 171 42.1
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 3.0e-25 119.4 171 40.9
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 1.5e-24 117.1 168 42.3
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.5e-24 117.1 175 40.6
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 1.5e-24 117.1 175 41.7
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 1.5e-24 117.1 187 39.0
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 1.5e-24 117.1 166 41.6
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 2.5e-24 116.3 167 43.1
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 2.5e-24 116.3 166 40.4
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 3.3e-24 115.9 170 41.8
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 4.3e-24 115.5 167 41.3
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 5.6e-24 115.2 171 43.3
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 7.3e-24 114.8 171 41.5
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 7.3e-24 114.8 166 44.0
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 9.5e-24 114.4 177 39.0
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 2.8e-23 112.8 166 42.2
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 2.8e-23 112.8 113 51.3
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 3.6e-23 112.5 176 42.6
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 1.4e-22 110.5 171 36.3
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 2.3e-22 109.8 176 39.8
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 8.9e-22 107.8 186 38.7
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 4.4e-21 105.5 168 40.5
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 7.5e-21 104.8 176 40.9
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 9.8e-21 104.4 167 40.7
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.1e-19 100.9 167 37.7
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.4e-19 100.5 151 40.4
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 2.1e-15 86.7 179 35.8
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 2.3e-14 83.2 175 32.6
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 5.4e-11 72.0 175 30.9
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 9.2e-11 71.2 181 29.3
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.3e-09 67.4 191 27.7
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 2.1e-07 60.1 115 40.0


User provided reference genes

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