Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 1.8e-168 595.9 319 100.0
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 9.0e-115 417.5 408 64.7
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 2.0e-114 416.4 408 61.8
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 6.0e-111 404.8 372 64.2
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 6.0e-111 404.8 372 64.2
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 3.9e-110 402.1 434 58.1
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 2.0e-106 389.8 434 59.7
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 2.2e-105 386.3 395 59.5
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 1.9e-104 383.3 413 58.1
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 3.1e-99 365.9 444 56.3
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 1.8e-94 350.1 446 53.8
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 2.3e-94 349.7 415 55.2
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 1.1e-88 330.9 408 55.1
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 5.5e-88 328.6 414 51.0
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 8.2e-84 314.7 462 49.1
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 9.0e-83 311.2 369 53.7
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 2.9e-81 306.2 309 58.3
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.1e-80 304.3 421 47.0
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 5.7e-77 292.0 432 49.1
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 6.7e-62 241.9 363 43.8
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 8.8e-62 241.5 352 45.5
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 8.8e-62 241.5 357 44.3
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 1.1e-61 241.1 354 44.6
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 5.7e-61 238.8 338 45.0
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 7.5e-61 238.4 390 41.8
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 2.8e-60 236.5 359 44.6
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 2.8e-60 236.5 361 42.4
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 6.3e-60 235.3 356 43.5
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 6.3e-60 235.3 401 42.6
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 8.2e-60 235.0 367 42.2
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 1.1e-59 234.6 358 45.0
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 4.1e-59 232.6 310 46.1
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 4.1e-59 232.6 359 43.7
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 2.7e-58 229.9 360 43.3
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 3.8e-57 226.1 361 40.4
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 6.5e-57 225.3 315 46.7
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 2.5e-56 223.4 462 38.1
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 2.5e-56 223.4 313 44.4
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 3.2e-56 223.0 360 43.9
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 3.2e-56 223.0 362 41.7
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 3.2e-56 223.0 333 44.1
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 5.5e-56 222.2 374 41.2
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 7.2e-56 221.9 359 42.9
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 7.2e-56 221.9 361 41.0
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 9.4e-56 221.5 492 35.8
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 9.4e-56 221.5 397 38.3
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 2.7e-55 219.9 339 42.8
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 2.7e-55 219.9 460 36.7
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 8.0e-55 218.4 346 44.5
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 1.0e-54 218.0 372 43.8
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 1.8e-54 217.2 369 43.1
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 2.3e-54 216.9 377 41.4
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 5.2e-54 215.7 368 40.8
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 5.2e-54 215.7 321 43.0
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 6.8e-54 215.3 351 42.5
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 2.0e-53 213.8 469 34.8
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.0e-53 213.8 455 37.4
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 2.0e-53 213.8 440 38.0
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 4.4e-53 212.6 471 36.5
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 1.7e-52 210.7 429 37.8
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 2.2e-52 210.3 366 39.3
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.8e-52 209.9 461 37.3
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 2.8e-52 209.9 461 37.1
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 8.3e-52 208.4 369 41.7
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 1.8e-51 207.2 347 41.2
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 4.1e-51 206.1 329 42.9
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 4.1e-51 206.1 489 35.8
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 5.4e-51 205.7 367 39.2
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 9.1e-51 204.9 425 38.4
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.2e-50 204.5 479 34.4
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 2.0e-50 203.8 312 42.0
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 3.5e-50 203.0 107 97.2
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 3.5e-50 203.0 296 44.3
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 3.5e-50 203.0 483 37.1
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 1.7e-49 200.7 452 35.0
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 2.2e-49 200.3 430 35.3
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.1e-48 198.0 360 38.9
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 1.5e-48 197.6 340 40.9
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 1.9e-48 197.2 430 36.5
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 2.5e-48 196.8 298 43.6
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 1.6e-47 194.1 452 34.7
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 4.7e-47 192.6 507 33.1
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 1.0e-46 191.4 441 36.1
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 2.3e-46 190.3 409 35.0
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 6.8e-46 188.7 459 33.6
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 7.5e-45 185.3 500 32.0
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 9.8e-45 184.9 492 32.3
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.7e-44 183.0 501 32.1
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 3.7e-44 183.0 520 32.9
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 6.3e-44 182.2 500 31.8
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 1.1e-43 181.4 508 34.3
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 1.4e-43 181.0 505 32.3
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 4.1e-43 179.5 491 34.6
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.2e-42 177.9 510 31.0
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 2.0e-42 177.2 505 31.3
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 2.7e-42 176.8 325 38.2
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 2.7e-42 176.8 369 35.2
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 3.5e-42 176.4 400 36.2
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.7e-41 174.1 450 32.9
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.3e-41 173.7 468 35.3
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 2.3e-41 173.7 491 33.2
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 5.0e-41 172.6 311 38.3
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 4.3e-40 169.5 465 34.4
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 4.3e-40 169.5 451 33.5
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 1.2e-39 167.9 442 31.2
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 2.1e-39 167.2 169 57.4
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 2.8e-39 166.8 176 54.5
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 1.0e-38 164.9 532 30.8
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 1.4e-38 164.5 175 55.4
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 6.8e-38 162.2 307 39.7
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 8.9e-38 161.8 176 52.8
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 2.6e-37 160.2 455 31.6
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 3.4e-37 159.8 293 37.5
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 5.7e-37 159.1 151 58.3
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 9.2e-35 151.8 482 30.9
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 2.0e-34 150.6 479 28.4
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 2.0e-34 150.6 479 28.4
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 1.0e-33 148.3 457 29.8
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 1.1e-32 144.8 487 31.2
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.2e-30 136.0 116 62.9
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 1.1e-27 128.3 350 32.0
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.0e-26 124.0 132 51.5
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 3.5e-26 123.2 300 33.3
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 9.5e-24 115.2 432 30.3
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 7.5e-21 105.5 354 30.5
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 1.1e-19 101.7 102 52.0
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 7.8e-18 95.5 124 46.8
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 8.6e-17 92.0 73 61.6
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 4.7e-15 86.3 69 60.9
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 4.9e-12 76.3 80 51.2
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 4.1e-11 73.2 147 34.0
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 2.3e-09 67.4 50 54.0
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 4.7e-07 59.7 286 25.2


User provided reference genes

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