Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01677 Brassica carinata HOM05D002977 ORTHO05D003225 1.8e-230 802.4 450 100.0
C09p34660 Brassica napus HOM05D002977 ORTHO05D003225 6.8e-193 677.6 475 85.7
BolC9t56312H Brassica oleracea HOM05D002977 ORTHO05D003225 9.2e-190 667.2 491 82.9
A09p27340 Brassica napus HOM05D002977 ORTHO05D003225 7.8e-189 664.1 480 82.1
BraA09t38300Z Brassica rapa HOM05D002977 ORTHO05D003225 7.8e-189 664.1 481 79.6
Thhalv10028604m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 5.4e-174 614.8 493 76.1
Sp6g05680 Schrenkiella parvula HOM05D002977 ORTHO05D003225 4.0e-161 572.0 488 73.2
CARHR254530 Cardamine hirsuta HOM05D002977 ORTHO05D003225 1.2e-160 570.5 476 70.2
BcaC03g16329 Brassica carinata HOM05D002977 ORTHO05D003225 2.0e-160 569.7 488 75.8
C02p41490 Brassica napus HOM05D002977 ORTHO05D003225 2.0e-160 569.7 488 75.8
A02p26000 Brassica napus HOM05D002977 ORTHO05D003225 7.6e-160 567.8 498 74.5
BcaB05g23809 Brassica carinata HOM05D002977 ORTHO05D003225 6.4e-159 564.7 499 73.1
BraA02t07599Z Brassica rapa HOM05D002977 ORTHO05D003225 1.2e-157 560.5 505 73.1
AT4G11780 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 1.1e-150 537.3 487 73.5
AL6G46490 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 4.3e-147 525.4 486 72.0
Carub.0006s3089 Capsella rubella HOM05D002977 ORTHO05D003225 2.4e-145 519.6 505 67.7
BolC2t10166H Brassica oleracea HOM05D002977 ORTHO05D003225 4.5e-144 515.4 508 69.7
Aa31LG9G10650 Aethionema arabicum HOM05D002977 ORTHO05D003225 6.7e-124 448.4 485 58.6
Thhalv10025169m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 7.7e-96 355.1 478 51.3
Sp7g21110 Schrenkiella parvula HOM05D002977 ORTHO05D003225 2.2e-95 353.6 492 49.4
CARHR230080 Cardamine hirsuta HOM05D002977 ORTHO05D003225 3.8e-95 352.8 461 50.5
AT4G23020 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 4.7e-93 345.9 465 49.2
THA.LOC104806370 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 1.4e-89 334.3 484 52.3
C01p17640 Brassica napus HOM05D002977 ORTHO05D003225 6.5e-87 325.5 476 49.6
Carub.0007s1825 Capsella rubella HOM05D002977 ORTHO05D003225 2.1e-85 320.5 487 46.0
A01p14320 Brassica napus HOM05D002977 ORTHO05D003225 3.6e-85 319.7 469 48.4
BcaC09g51034 Brassica carinata HOM05D002977 ORTHO05D003225 9.8e-83 311.6 462 48.9
BraA01t01377Z Brassica rapa HOM05D002977 ORTHO05D003225 2.3e-79 300.4 516 44.2
AL7G30500 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 7.0e-73 278.9 467 44.8
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.4e-41 174.9 492 36.6
C03p84550 Brassica napus HOM05D002977 ORTHO05D003225 1.7e-39 167.9 171 56.7
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 2.3e-39 167.5 498 33.7
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 1.9e-38 164.5 512 34.6
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 1.4e-36 158.3 458 33.0
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 3.1e-36 157.1 495 33.3
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 5.3e-36 156.4 478 33.5
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 6.9e-36 156.0 485 31.8
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 9.0e-36 155.6 471 38.2
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.5e-35 154.8 478 34.9
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 2.0e-35 154.5 487 31.4
BcaB03g11755 Brassica carinata HOM05D002977 ORTHO05D003225 4.4e-35 153.3 358 38.8
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 7.6e-35 152.5 474 34.4
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 7.6e-35 152.5 481 29.9
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 9.9e-35 152.1 478 33.1
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 1.6e-32 144.8 466 30.9
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 2.7e-32 144.1 483 31.5
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 2.7e-32 144.1 470 31.3
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 4.6e-32 143.3 524 30.2
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 7.8e-32 142.5 512 29.5
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 1.7e-31 141.4 481 32.4
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.7e-31 141.4 505 32.5
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 5.1e-31 139.8 473 28.3
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 1.1e-30 138.7 506 29.4
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 2.5e-30 137.5 482 32.8
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 1.6e-29 134.8 527 30.9
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 3.6e-29 133.7 506 27.9
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 6.9e-28 129.4 508 29.9
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 9.0e-28 129.0 486 30.2
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 9.0e-28 129.0 454 30.8
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 1.2e-27 128.6 488 28.5
BolC3t20745H Brassica oleracea HOM05D002977 ORTHO05D003225 2.0e-27 127.9 124 57.3
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 2.0e-27 127.9 481 29.7
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 4.5e-27 126.7 528 30.9
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 4.5e-27 126.7 489 27.6
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 4.5e-27 126.7 456 27.9
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 4.5e-27 126.7 456 27.9
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 5.8e-27 126.3 486 34.0
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 5.8e-27 126.3 534 31.5
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 7.6e-27 125.9 514 30.4
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 9.9e-27 125.6 489 32.5
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 1.3e-26 125.2 484 28.7
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 2.2e-26 124.4 466 28.8
Glyma.17G132000 Glycine max HOM05D002977 ORTHO05D003225 2.9e-26 124.0 485 29.3
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 6.4e-26 122.9 485 33.0
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.1e-25 122.1 470 28.7
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 1.1e-25 122.1 461 32.3
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.4e-25 121.7 506 31.2
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 2.4e-25 120.9 475 27.8
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 3.2e-25 120.6 482 27.2
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 7.1e-25 119.4 477 29.1
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 7.1e-25 119.4 477 29.1
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 9.3e-25 119.0 512 32.2
Glyma.05G050000 Glycine max HOM05D002977 ORTHO05D003225 1.2e-24 118.6 492 29.3
Ah.12g057650 Amaranthus hybridus HOM05D002977 ORTHO05D003225 1.6e-24 118.2 458 26.9
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.6e-24 118.2 479 29.2
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 1.6e-24 118.2 455 27.7
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 3.5e-24 117.1 481 29.3
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.5e-24 117.1 369 30.4
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 3.5e-24 117.1 498 28.9
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 4.6e-24 116.7 369 30.4
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 6.0e-24 116.3 491 26.3
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 6.0e-24 116.3 482 29.0
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 2.3e-23 114.4 369 30.1
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 3.9e-23 113.6 383 33.2
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 1.1e-22 112.1 460 27.2
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.1e-22 112.1 487 30.2
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 1.1e-22 112.1 500 28.4
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 3.3e-22 110.5 476 28.6
BcaNung01001 Brassica carinata HOM05D002977 ORTHO05D003225 5.6e-22 109.8 109 60.6
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 1.3e-21 108.6 473 28.3
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 1.3e-21 108.6 497 27.6
CiPaw.12G098800 Carya illinoinensis HOM05D002977 ORTHO05D003225 2.1e-21 107.8 511 28.2
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 2.1e-21 107.8 498 30.1
arahy.Tifrunner.gnm1.ann1.BQI3IB Arachis hypogaea HOM05D002977 ORTHO05D003225 4.8e-21 106.7 477 31.2
arahy.Tifrunner.gnm1.ann1.ELA92E Arachis hypogaea HOM05D002977 ORTHO05D003225 4.8e-21 106.7 490 33.1
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 4.8e-21 106.7 506 28.5
Lj2A196T48 Lonicera japonica HOM05D002977 ORTHO05D003225 6.2e-21 106.3 318 31.1
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 1.8e-20 104.8 483 27.7
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 2.6e-19 100.9 463 28.9
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 5.8e-19 99.8 208 33.2
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 2.2e-18 97.8 468 26.3
CSS0002536 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 1.1e-17 95.5 437 31.1
DCAR_006762 Daucus carota HOM05D002977 ORTHO05D003225 1.9e-17 94.7 404 27.0
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 7.1e-17 92.8 466 26.6
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 1.6e-16 91.7 449 26.9
GSVIVG01019863001 Vitis vinifera HOM05D002977 ORTHO05D003225 1.0e-15 89.0 183 39.3
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 1.3e-15 88.6 462 26.8
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 6.7e-15 86.3 488 28.7
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 1.1e-14 85.5 450 25.8
Ciclev10023936m.g Citrus clementina HOM05D002977 ORTHO05D003225 1.5e-14 85.1 130 43.8
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 2.5e-14 84.3 470 26.8
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 9.6e-14 82.4 475 28.8
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 2.1e-13 81.3 370 24.9
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 1.1e-12 79.0 509 29.5
MD04G1068300 Malus domestica HOM05D002977 ORTHO05D003225 1.4e-12 78.6 154 39.0
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 3.1e-12 77.4 438 28.1
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 4.1e-12 77.0 471 26.3
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 1.5e-11 75.1 402 28.6
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 2.6e-11 74.3 459 24.0
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 4.5e-11 73.6 464 24.4
Oeu062354.1 Olea europaea HOM05D002977 ORTHO05D003225 5.8e-11 73.2 93 47.3
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 1.0e-10 72.4 489 26.0
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.0e-10 72.4 449 24.7
ECA246G0913 Erigeron canadensis HOM05D002977 ORTHO05D003225 2.2e-10 71.2 463 24.2
Sc01g0008790 Simmondsia chinensis HOM05D002977 ORTHO05D003225 2.2e-10 71.2 127 39.4
Lsat_1_v5_gn_3_5860 Lactuca sativa HOM05D002524 ORTHO05D002718 8.4e-10 69.3 452 30.1
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 3.2e-09 67.4 459 29.8
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 4.2e-09 67.0 464 25.4
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 7.1e-09 66.2 464 24.8
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 7.1e-09 66.2 479 25.1
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 1.2e-08 65.5 452 27.0
Lalb_Chr16g0379981 Lupinus albus HOM05D002977 ORTHO05D003225 1.6e-08 65.1 441 24.5
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 3.5e-08 63.9 513 24.4
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 7.9e-08 62.8 450 29.3
TWI14G0163 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.8e-07 61.6 135 41.5
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 3.9e-07 60.5 467 28.3
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 8.7e-07 59.3 455 24.8
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 1.1e-06 58.9 451 29.3
BraA03t12372Z Brassica rapa HOM05D002977 ORTHO05D003225 1.5e-06 58.5 450 23.3
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 1.5e-06 58.5 470 26.8
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 1.5e-06 58.5 457 23.0
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 4.3e-06 57.0 459 27.7
Cpa.g.sc74.83 Carica papaya HOM05D002977 ORTHO05D003225 5.7e-06 56.6 185 29.7
BcaC01g06858 Brassica carinata HOM05D002977 ORTHO05D003225 7.4e-06 56.2 448 23.2


User provided reference genes

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