Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01674 Brassica carinata HOM05D007750 ORTHO05D009803 3.7e-135 485.7 262 100.0
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 6.1e-69 265.8 190 74.7
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 6.1e-69 265.8 190 74.7
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 5.7e-67 259.2 190 73.2
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 4.8e-66 256.1 190 72.1
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 6.1e-61 239.2 191 68.1
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 5.1e-60 236.1 195 65.1
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 8.8e-60 235.3 196 65.8
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 2.8e-58 230.3 191 65.4
AT4G11690 Arabidopsis thaliana HOM05D007750 ORTHO05D009803 1.4e-52 211.5 190 62.1
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 5.1e-52 209.5 195 60.0
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 1.1e-46 191.8 189 57.7
Prupe.6G076800 Prunus persica HOM05D007750 ORTHO05D009803 6.8e-36 156.0 191 47.1
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 4.4e-35 153.3 190 45.8
CiPaw.13G094000 Carya illinoinensis HOM05D007750 ORTHO05D009803 1.4e-33 148.3 194 42.8
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 1.4e-33 148.3 188 45.7
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 3.1e-33 147.1 185 42.7
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 4.1e-33 146.7 190 43.7
Gohir.A03G042099 Gossypium hirsutum HOM05D007750 ORTHO05D009803 3.5e-32 143.7 298 36.6
Cpa.g.sc81.142 Carica papaya HOM05D007750 ORTHO05D009803 5.9e-32 142.9 179 45.8
FvH4_3g36170 Fragaria vesca HOM05D007750 ORTHO05D009803 5.9e-32 142.9 193 42.0
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 7.7e-32 142.5 187 43.9
Gorai.003G131800 Gossypium raimondii HOM05D007750 ORTHO05D009803 7.7e-32 142.5 297 39.1
Gohir.D03G125600 Gossypium hirsutum HOM05D007750 ORTHO05D009803 1.0e-31 142.1 297 39.1
RcHm_v2.0_Chr5g0064911 Rosa chinensis HOM05D007750 ORTHO05D009803 1.0e-31 142.1 187 42.8
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 1.7e-31 141.4 183 42.1
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.1e-30 138.7 179 43.0
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 1.1e-30 138.7 188 42.6
FAN16G0393 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.5e-30 138.3 179 43.0
FAN11G0214 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.5e-30 137.5 179 43.6
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 2.5e-30 137.5 189 41.8
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 3.2e-30 137.1 179 42.5
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 5.5e-30 136.3 189 40.7
Manes.02G132900 Manihot esculenta HOM05D007750 ORTHO05D009803 1.6e-29 134.8 188 42.6
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 2.7e-29 134.0 186 42.5
arahy.Tifrunner.gnm1.ann1.T5BWJF Arachis hypogaea HOM05D007750 ORTHO05D009803 3.6e-29 133.7 185 43.8
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 3.6e-29 133.7 187 41.7
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 4.7e-29 133.3 191 41.4
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 4.7e-29 133.3 187 42.8
Ca_04398_v3 Cicer arietinum L. HOM05D007750 ORTHO05D009803 8.0e-29 132.5 187 42.8
Thecc.09G321000 Theobroma cacao HOM05D007750 ORTHO05D009803 8.0e-29 132.5 180 42.8
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 1.0e-28 132.1 187 39.6
Aqoxy496s001 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.4e-28 131.7 184 41.8
Aqoxy4G02931 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.4e-28 131.7 184 41.8
Duzib150G0757 Durio zibethinus HOM05D007750 ORTHO05D009803 1.8e-28 131.3 188 40.4
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 4.0e-28 130.2 189 41.8
Aqoxy7G03815 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 5.2e-28 129.8 184 40.8
Glyma.07G217200 Glycine max HOM05D007750 ORTHO05D009803 5.2e-28 129.8 185 43.2
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 5.2e-28 129.8 187 41.7
PGSC0003DMG400022754 Solanum tuberosum HOM05D007750 ORTHO05D009803 8.8e-28 129.0 190 41.1
RcHm_v2.0_Chr5g0064671 Rosa chinensis HOM05D007750 ORTHO05D009803 1.2e-27 128.6 179 41.9
Glyma.06G033500 Glycine max HOM05D007750 ORTHO05D009803 2.0e-27 127.9 185 42.2
arahy.Tifrunner.gnm1.ann1.7C1NTJ Arachis hypogaea HOM05D007750 ORTHO05D009803 2.6e-27 127.5 189 42.9
Lalb_Chr12g0196171 Lupinus albus HOM05D007750 ORTHO05D009803 3.4e-27 127.1 193 40.4
Cc01_g12900 Coffea canephora HOM05D007750 ORTHO05D009803 1.3e-26 125.2 184 39.1
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 3.7e-26 123.6 192 36.5
VMungo1215G1573 Vigna mungo HOM05D007750 ORTHO05D009803 3.7e-26 123.6 180 40.6
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 1.8e-25 121.3 186 37.6
Sopen08g028580 Solanum pennellii HOM05D007750 ORTHO05D009803 4.1e-25 120.2 190 38.9
Glyma.17G016400 Glycine max HOM05D007750 ORTHO05D009803 1.2e-24 118.6 186 38.7
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 1.6e-24 118.2 169 41.4
CAN.G981.43 Capsicum annuum HOM05D007750 ORTHO05D009803 2.0e-24 117.9 190 37.9
AL6G46300 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 1.7e-23 114.8 73 72.6
AL6G46430 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 1.7e-23 114.8 73 72.6
Potri.017G131600 Populus trichocarpa HOM05D007750 ORTHO05D009803 2.9e-23 114.0 187 39.6
Glyma.07G257600 Glycine max HOM05D007750 ORTHO05D009803 3.8e-23 113.6 167 42.5
COL.COLO4_18513 Corchorus olitorius HOM05D007750 ORTHO05D009803 3.3e-22 110.5 160 40.0
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 5.6e-22 109.8 190 35.3
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 4.7e-21 106.7 193 36.8
Sc21g0005800 Simmondsia chinensis HOM05D007750 ORTHO05D009803 3.0e-20 104.0 180 38.9
Actinidia07034 Actinidia chinensis HOM05D007750 ORTHO05D009803 4.1e-17 93.6 184 35.3
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 7.0e-17 92.8 140 37.9
Ciclev10030066m.g Citrus clementina HOM05D007750 ORTHO05D009803 3.9e-15 87.0 170 37.1
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 3.6e-13 80.5 187 29.9
AUR62018631 Chenopodium quinoa HOM05D007750 ORTHO05D009803 6.2e-13 79.7 157 33.8
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 2.0e-11 74.7 187 31.6
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 5.8e-11 73.2 94 39.4
Sabra17G0109600 Salix brachista HOM05D007750 ORTHO05D009803 3.7e-10 70.5 69 50.7
EL10Ac5g12003 Beta vulgaris HOM05D007750 ORTHO05D009803 2.4e-09 67.8 69 46.4
ClCG09G016230 Citrullus lanatus HOM05D007750 ORTHO05D009803 1.6e-08 65.1 138 33.3
CsaV3_7G007090 Cucumis sativus L. HOM05D007750 ORTHO05D009803 1.6e-08 65.1 72 47.2
Eucgr.H02967 Eucalyptus grandis HOM05D007750 ORTHO05D009803 7.8e-08 62.8 79 38.0
Nitab4.5_0007891g0010 Nicotiana tabacum HOM05D007750 ORTHO05D009803 1.0e-07 62.4 67 43.3
Nitab4.5_0001714g0210 Nicotiana tabacum HOM05D007750 ORTHO05D009803 3.0e-07 60.8 66 42.4


User provided reference genes

Program Settings