Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 2.6e-175 618.6 313 100.0
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 2.1e-68 263.5 284 60.2
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 1.1e-67 261.2 281 60.1
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 8.9e-67 258.1 284 59.2
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 1.5e-66 257.3 284 58.8
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 2.0e-66 256.9 278 59.0
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 4.1e-64 249.2 285 56.8
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 3.5e-63 246.1 280 56.1
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 1.6e-60 237.3 275 56.0
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 2.1e-60 236.9 283 55.8
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 4.7e-60 235.7 283 55.1
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 8.1e-60 235.0 285 55.1
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.1e-59 234.6 279 55.2
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 1.2e-58 231.1 279 54.8
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 4.4e-58 229.2 239 59.8
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 5.8e-58 228.8 240 59.6
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 1.3e-54 217.6 198 66.2
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 1.6e-52 210.7 204 59.8
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 2.1e-52 210.3 209 59.3
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 2.1e-47 193.7 282 47.9
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 2.8e-36 156.8 246 43.5
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 1.4e-35 154.5 244 43.9
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 2.4e-35 153.7 272 40.4
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 6.9e-35 152.1 246 43.1
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 9.0e-35 151.8 279 40.1
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 3.4e-34 149.8 269 39.4
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 4.5e-34 149.4 269 40.5
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 5.8e-34 149.1 246 41.9
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.6e-34 148.7 248 42.7
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 1.3e-33 147.9 229 44.5
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 2.9e-33 146.7 269 39.0
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 3.8e-33 146.4 232 40.5
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.9e-33 146.0 248 41.9
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 2.5e-32 143.7 234 42.3
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 5.5e-32 142.5 232 41.4
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 7.1e-32 142.1 248 41.5
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 7.1e-32 142.1 248 40.7
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 9.3e-32 141.7 253 39.1
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.2e-31 141.4 234 41.0
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 1.6e-31 141.0 232 41.8
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 2.7e-31 140.2 232 41.8
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 7.9e-31 138.7 232 43.1
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.3e-30 137.9 238 41.2
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 1.3e-30 137.9 228 41.7
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 1.8e-30 137.5 279 39.1
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.9e-29 134.0 223 39.0
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 1.9e-29 134.0 272 37.1
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 1.9e-29 134.0 270 36.7
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 1.9e-29 134.0 268 36.9
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 3.3e-29 133.3 248 39.5
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 3.3e-29 133.3 277 36.1
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.4e-29 132.1 248 41.5
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 9.6e-29 131.7 167 50.9
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.6e-28 131.0 160 51.9
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 2.1e-28 130.6 161 50.9
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 2.1e-28 130.6 239 39.3
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 2.8e-28 130.2 115 58.3
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 6.2e-28 129.0 234 38.0
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 6.2e-28 129.0 251 38.2
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 8.2e-28 128.6 176 46.6
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.1e-27 128.3 202 42.1
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 1.1e-27 128.3 167 46.7
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 1.1e-27 128.3 164 48.2
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 1.4e-27 127.9 155 49.7
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.4e-27 127.9 155 49.7
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 1.8e-27 127.5 271 35.8
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 5.3e-27 125.9 200 41.0
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 5.3e-27 125.9 234 37.6
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 1.2e-26 124.8 242 36.0
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 1.5e-26 124.4 155 49.0
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 2.0e-26 124.0 248 36.7
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 3.4e-26 123.2 253 37.2
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 3.4e-26 123.2 155 49.0
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 7.6e-26 122.1 246 37.0
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 7.6e-26 122.1 248 37.5
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.0e-25 121.7 248 35.9
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 1.3e-25 121.3 246 36.2
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 1.3e-25 121.3 190 40.0
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 1.3e-25 121.3 234 36.3
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 1.3e-25 121.3 205 39.5
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 1.7e-25 120.9 228 36.0
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 3.8e-25 119.8 251 35.1
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 4.9e-25 119.4 230 38.7
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 8.4e-25 118.6 242 35.5
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 8.4e-25 118.6 256 37.1
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 1.4e-24 117.9 237 35.9
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 1.9e-24 117.5 210 38.6
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 2.5e-24 117.1 198 37.4
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 2.5e-24 117.1 237 35.4
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 2.5e-24 117.1 237 35.4
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 2.5e-24 117.1 155 45.2
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 3.2e-24 116.7 231 38.1
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 4.2e-24 116.3 159 44.0
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 5.5e-24 115.9 234 35.5
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 7.1e-24 115.5 179 43.6
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 9.3e-24 115.2 159 43.4
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 1.6e-23 114.4 250 35.6
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.6e-23 114.4 287 33.1
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 2.7e-23 113.6 238 34.0
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.5e-23 113.2 179 43.0
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 4.6e-23 112.8 158 45.6
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 6.1e-23 112.5 201 38.8
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 1.0e-22 111.7 159 43.4
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 1.3e-22 111.3 167 43.1
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 1.8e-22 110.9 119 47.1
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 4.3e-21 106.3 153 41.2
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.4e-21 105.5 248 35.9
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 2.8e-20 103.6 63 88.9
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 6.3e-20 102.4 63 88.9
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 8.2e-20 102.1 177 39.0
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 8.2e-20 102.1 140 45.7
C07p07110 Brassica napus HOM05D000057 ORTHO05D005212 1.4e-19 101.3 95 66.3
BolC7t41130H Brassica oleracea HOM05D000057 ORTHO05D005212 1.4e-19 101.3 95 66.3
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 1.8e-19 100.9 63 87.3
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 1.8e-19 100.9 63 87.3
C08p00860 Brassica napus HOM05D004482 ORTHO05D005212 1.2e-18 98.2 61 90.2
A10p31820 Brassica napus HOM05D004482 ORTHO05D005212 7.7e-18 95.5 55 94.5
BraA10t45227Z Brassica rapa HOM05D004482 ORTHO05D005212 7.7e-18 95.5 55 94.5
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 1.0e-17 95.1 157 41.4
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 1.3e-17 94.7 95 50.5
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 3.8e-17 93.2 238 31.5
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 3.8e-17 93.2 246 31.7
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 3.8e-17 93.2 169 38.5
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 6.5e-17 92.4 206 32.0
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 2.1e-15 87.4 234 31.6
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 4.6e-15 86.3 272 26.5
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 6.1e-15 85.9 142 41.5
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 4.3e-13 79.7 153 37.3
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.2e-12 77.4 100 51.0
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 1.8e-11 74.3 327 25.7
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 6.9e-11 72.4 156 34.6
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 6.9e-11 72.4 253 30.0
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.5e-10 71.2 149 34.9
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 4.5e-10 69.7 112 43.8
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 5.9e-10 69.3 98 45.9
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.9e-09 67.0 149 34.2
Aa31sc18G100 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-07 61.2 74 39.2
Aa31sc51G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-07 61.2 74 39.2
Aa31sc320G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-07 60.5 72 43.1
Aa31LG6G10540 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.9e-07 58.9 74 40.5
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 7.9e-07 58.9 121 39.7
Aa31LG1G9570 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-06 58.2 74 41.9
Aa31LG9G15190 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-06 58.2 74 41.9
BcaC02g08472 Brassica carinata HOM05D000003 ORTHO05D000004 1.8e-06 57.8 53 45.3
Aa31sc178G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.9e-06 56.6 73 38.4
Aa31LG1G4180 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.7e-06 55.8 74 36.5
Aa31LG5G20940 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.7e-06 55.8 74 40.5


User provided reference genes

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