Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 3.5e-33 144.4 76 100.0
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 1.1e-31 139.4 76 94.7
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-31 139.4 76 94.7
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 1.1e-31 139.4 76 94.7
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.9e-31 138.7 76 92.1
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 7.3e-31 136.7 76 92.1
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 7.3e-31 136.7 76 92.1
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.2e-30 136.0 76 90.8
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 3.6e-30 134.4 76 90.8
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 3.6e-30 134.4 76 90.8
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 1.1e-29 132.9 76 88.2
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-29 132.9 76 88.2
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 1.1e-29 132.9 76 88.2
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 1.4e-29 132.5 76 86.8
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 2.0e-28 128.6 76 86.8
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 2.0e-28 128.6 76 84.2
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 9.8e-28 126.3 76 84.2
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 9.8e-28 126.3 76 84.2
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 9.8e-28 126.3 76 84.2
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.3e-27 125.9 76 82.9
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 3.7e-27 124.4 76 82.9
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 4.9e-27 124.0 76 82.9
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 4.9e-27 124.0 76 82.9
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 5.1e-16 87.4 76 60.5
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 6.6e-16 87.0 74 66.2
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 1.6e-14 82.4 76 60.5
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.1e-14 82.0 76 57.9
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 2.8e-14 81.6 76 60.5
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 1.2e-12 76.3 76 53.9
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.5e-12 75.9 74 59.5
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 2.6e-12 75.1 89 51.7
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 2.6e-12 75.1 74 59.5
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 3.4e-12 74.7 87 51.7
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 4.4e-12 74.3 70 57.1
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 7.6e-12 73.6 76 52.6
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 4.9e-11 70.9 76 53.9
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 4.9e-11 70.9 78 53.8
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 8.4e-11 70.1 68 52.9
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 8.4e-11 70.1 61 62.3
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 8.4e-11 70.1 69 55.1
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 8.4e-11 70.1 69 55.1
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 1.1e-10 69.7 76 52.6
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.4e-10 69.3 70 54.3
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.9e-10 68.9 71 50.7
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.9e-10 68.9 65 58.5
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 3.2e-10 68.2 62 59.7
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 5.4e-10 67.4 68 55.9
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 7.1e-10 67.0 70 54.3
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.2e-09 66.2 68 54.4
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.6e-09 65.9 73 52.1
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.6e-09 65.9 69 52.2
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.1e-09 65.5 76 52.6
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 3.5e-09 64.7 83 49.4
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 3.5e-09 64.7 75 50.7
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 3.5e-09 64.7 77 51.9
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 4.6e-09 64.3 76 51.3
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 4.6e-09 64.3 79 50.6
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 6.0e-09 63.9 69 55.1
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 7.8e-09 63.5 79 49.4
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 7.8e-09 63.5 79 49.4
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 7.8e-09 63.5 79 49.4
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.0e-08 63.2 66 53.0
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.0e-08 63.2 66 53.0
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.0e-08 63.2 68 51.5
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.0e-08 63.2 64 56.2
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.0e-08 63.2 70 51.4
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.3e-08 62.8 66 53.0
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.7e-08 62.4 70 52.9
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.7e-08 62.4 70 52.9
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.3e-08 62.0 69 53.6
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 2.3e-08 62.0 68 51.5
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 3.0e-08 61.6 79 50.6
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.9e-08 61.2 64 56.2
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 5.1e-08 60.8 68 51.5
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 6.6e-08 60.5 69 49.3
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 6.6e-08 60.5 70 52.9
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 8.7e-08 60.1 60 56.7
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 8.7e-08 60.1 68 48.5
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 8.7e-08 60.1 68 48.5
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.5e-07 59.3 64 54.7
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 2.5e-07 58.5 64 54.7
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 2.5e-07 58.5 74 48.6
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 3.3e-07 58.2 74 50.0
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 5.6e-07 57.4 63 52.4
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 7.3e-07 57.0 63 50.8
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 7.3e-07 57.0 67 50.7
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 9.6e-07 56.6 63 49.2
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 9.6e-07 56.6 57 52.6
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.2e-06 56.2 62 54.8
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.6e-06 55.8 63 50.8
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 2.1e-06 55.5 61 49.2
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 2.1e-06 55.5 63 54.0
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.8e-06 55.1 61 50.8
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 2.8e-06 55.1 73 45.2
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 2.8e-06 55.1 63 50.8
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.8e-06 55.1 62 48.4
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 2.8e-06 55.1 62 53.2
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 3.6e-06 54.7 64 48.4
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 3.6e-06 54.7 63 50.8
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.6e-06 54.7 77 41.6
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 3.6e-06 54.7 61 49.2
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 4.7e-06 54.3 66 50.0
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 6.2e-06 53.9 63 52.4
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 6.2e-06 53.9 79 46.8
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 6.2e-06 53.9 79 44.3
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 8.1e-06 53.5 75 45.3
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 8.1e-06 53.5 75 45.3
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 8.1e-06 53.5 66 45.5


User provided reference genes

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