Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 1.8e-144 516.2 308 100.0
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 1.8e-48 197.2 154 73.4
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 6.0e-23 112.5 75 81.3
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.2e-18 98.2 77 67.5
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.4e-18 96.7 72 69.4
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.2e-17 94.0 77 64.9
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.1e-16 91.7 109 51.4
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.1e-16 91.7 107 51.4
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.1e-16 91.7 74 66.2
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.4e-16 91.3 74 64.9
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 3.2e-16 90.1 74 63.5
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 4.1e-16 89.7 77 63.6
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 4.1e-16 89.7 80 61.2
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 7.0e-16 89.0 74 64.9
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 7.0e-16 89.0 74 64.9
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 7.0e-16 89.0 74 64.9
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 7.0e-16 89.0 74 64.9
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 9.2e-16 88.6 80 58.8
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.2e-15 88.2 80 55.0
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.2e-15 88.2 80 55.0
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.6e-15 87.8 77 62.3
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.1e-15 87.4 77 62.3
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 2.1e-15 87.4 80 60.0
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 3.5e-15 86.7 77 59.7
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 6.0e-15 85.9 74 63.5
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.3e-14 84.7 74 62.2
BcaB07g33953 Brassica carinata HOM05D004149 ORTHO05D095923 1.3e-14 84.7 52 88.5
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.7e-14 84.3 117 45.3
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.7e-14 84.3 80 55.0
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 2.3e-14 84.0 80 56.2
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.3e-14 84.0 117 45.3
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 2.3e-14 84.0 117 45.3
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 3.9e-14 83.2 74 60.8
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 5.1e-14 82.8 74 60.8
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 8.6e-14 82.0 74 59.5
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 8.6e-14 82.0 74 59.5
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 8.6e-14 82.0 80 56.2
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 1.9e-13 80.9 80 51.2
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.9e-13 80.9 77 53.2
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 2.5e-13 80.5 80 50.0
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 2.5e-13 80.5 143 37.1
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 2.5e-13 80.5 80 52.5
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 3.3e-13 80.1 80 53.8
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 3.3e-13 80.1 110 46.4
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 3.3e-13 80.1 77 55.8
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 4.3e-13 79.7 77 51.9
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 4.3e-13 79.7 80 51.2
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 5.6e-13 79.3 80 55.0
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 5.6e-13 79.3 80 53.8
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 7.3e-13 79.0 80 52.5
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 9.5e-13 78.6 67 64.2
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 9.5e-13 78.6 77 53.2
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 9.5e-13 78.6 77 54.5
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 9.5e-13 78.6 80 50.0
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.2e-12 78.2 80 52.5
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.2e-12 78.2 80 50.0
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.2e-12 78.2 84 50.0
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 1.6e-12 77.8 77 53.2
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 2.1e-12 77.4 80 50.0
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 2.1e-12 77.4 77 53.2
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 2.1e-12 77.4 77 49.4
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.8e-12 77.0 77 51.9
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 2.8e-12 77.0 77 51.9
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 2.8e-12 77.0 77 51.9
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 3.6e-12 76.6 80 51.2
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 3.6e-12 76.6 80 52.5
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 3.6e-12 76.6 80 51.2
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 4.7e-12 76.3 80 52.5
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 4.7e-12 76.3 77 53.2
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 6.2e-12 75.9 77 49.4
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 6.2e-12 75.9 80 50.0
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 6.2e-12 75.9 80 52.5
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 6.2e-12 75.9 74 54.1
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 6.2e-12 75.9 71 53.5
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 6.2e-12 75.9 80 48.8
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 8.1e-12 75.5 80 51.2
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 8.1e-12 75.5 80 50.0
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 8.1e-12 75.5 70 52.9
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 1.1e-11 75.1 77 48.1
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 1.1e-11 75.1 80 48.8
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.4e-11 74.7 92 45.7
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.4e-11 74.7 80 48.8
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.4e-11 74.7 80 48.8
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.4e-11 74.7 80 50.0
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.8e-11 74.3 73 54.8
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.8e-11 74.3 91 45.1
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 2.3e-11 73.9 80 52.5
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 3.1e-11 73.6 80 50.0
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 3.1e-11 73.6 80 50.0
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.1e-11 73.6 80 47.5
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 3.1e-11 73.6 80 47.5
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 3.1e-11 73.6 80 47.5
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 3.1e-11 73.6 78 48.7
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 4.0e-11 73.2 77 50.6
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 4.0e-11 73.2 80 51.2
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 4.0e-11 73.2 80 46.2
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 4.0e-11 73.2 102 44.1
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 5.2e-11 72.8 80 48.8
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 5.2e-11 72.8 77 48.1
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 8.9e-11 72.0 77 48.1
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.2e-10 71.6 80 50.0
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.2e-10 71.6 70 51.4
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.2e-10 71.6 72 47.2
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.2e-10 71.6 80 50.0
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.5e-10 71.2 77 49.4
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.5e-10 71.2 80 48.8
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.5e-10 71.2 77 48.1
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.5e-10 71.2 80 48.8
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 1.5e-10 71.2 80 48.8
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.0e-10 70.9 77 48.1
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.0e-10 70.9 77 48.1
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 2.0e-10 70.9 77 50.6
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 2.0e-10 70.9 77 49.4
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 2.0e-10 70.9 77 46.8
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 2.0e-10 70.9 80 48.8
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.6e-10 70.5 74 48.6
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 2.6e-10 70.5 72 51.4
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 3.4e-10 70.1 80 48.8
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 4.4e-10 69.7 80 47.5
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 4.4e-10 69.7 77 49.4
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 5.8e-10 69.3 77 50.6
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.5e-10 68.9 74 47.3
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 7.5e-10 68.9 80 47.5
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 9.9e-10 68.6 75 49.3
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 9.9e-10 68.6 77 49.4
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 2.2e-09 67.4 77 49.4
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.2e-09 67.4 79 46.8
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 2.2e-09 67.4 114 38.6
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.2e-09 67.4 80 46.2
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 2.2e-09 67.4 80 45.0
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 2.9e-09 67.0 74 50.0
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 4.9e-09 66.2 80 45.0
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 4.9e-09 66.2 80 45.0
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 6.4e-09 65.9 80 43.8
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 8.3e-09 65.5 80 45.0
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 1.1e-08 65.1 74 47.3
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.4e-08 64.7 77 46.8
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.4e-08 64.7 70 47.1
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.9e-08 64.3 80 40.0
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 2.4e-08 63.9 77 45.5
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 4.1e-08 63.2 80 41.2
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.1e-08 63.2 80 41.2
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.1e-08 63.2 80 41.2
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 5.4e-08 62.8 77 45.5
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.7e-07 60.5 77 40.3
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 2.3e-06 57.4 77 42.9
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 5.1e-06 56.2 71 45.1
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 8.6e-06 55.5 67 44.8


User provided reference genes

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