Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 2.7e-189 665.2 349 100.0
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 5.3e-169 597.8 348 91.7
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 6.1e-165 584.3 348 89.9
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 1.9e-163 579.3 348 89.4
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 1.3e-162 576.6 348 88.2
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 1.3e-162 576.6 348 88.2
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 1.3e-162 576.6 348 88.2
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 5.5e-158 561.2 350 85.4
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 3.3e-155 552.0 350 84.0
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 5.7e-155 551.2 350 84.9
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 1.0e-151 540.4 350 83.7
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 4.2e-126 455.3 349 70.2
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 1.4e-113 413.7 344 64.0
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 1.2e-109 400.6 342 64.3
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 1.3e-106 390.6 339 62.2
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 4.6e-104 382.1 342 61.1
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 2.1e-101 373.2 351 61.3
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 3.1e-100 369.4 340 61.5
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 4.9e-98 362.1 346 57.5
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 6.4e-98 361.7 335 58.8
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 8.6e-95 351.3 338 59.8
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 3.3e-94 349.4 352 58.0
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 1.1e-92 344.4 350 63.4
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 5.2e-92 342.0 341 58.1
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 8.9e-92 341.3 340 55.9
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 4.4e-91 339.0 337 56.1
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 3.8e-90 335.9 341 56.3
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 1.9e-89 333.6 337 55.5
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 2.4e-89 333.2 337 55.8
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 7.8e-88 328.2 336 55.1
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 1.3e-87 327.4 337 54.9
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 2.3e-87 326.6 349 53.9
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 3.9e-87 325.9 340 54.7
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 3.9e-87 325.9 352 53.4
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 1.2e-85 320.9 341 54.3
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 1.2e-85 320.9 341 54.3
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 2.8e-85 319.7 320 55.3
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 2.4e-84 316.6 343 51.6
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 4.0e-84 315.8 346 53.8
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 4.9e-82 308.9 349 51.9
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 8.4e-82 308.1 350 49.7
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 2.4e-81 306.6 339 55.2
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 2.3e-79 300.1 353 50.4
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 3.9e-79 299.3 353 49.6
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 2.1e-77 293.5 355 49.3
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 4.8e-77 292.4 331 50.8
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 1.4e-76 290.8 345 47.8
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 6.9e-76 288.5 348 47.1
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 4.5e-75 285.8 347 47.6
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 2.4e-73 280.0 342 49.4
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 2.4e-73 280.0 345 50.4
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 7.9e-72 275.0 349 46.1
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 1.8e-71 273.9 340 48.8
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 5.1e-71 272.3 356 48.3
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 5.1e-71 272.3 349 46.4
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 5.6e-70 268.9 347 47.3
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 2.6e-67 260.0 353 47.6
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 1.6e-64 250.8 196 64.8
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 7.6e-59 231.9 168 67.9
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 6.0e-56 222.2 326 39.9
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 1.5e-54 217.6 168 63.7
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 4.1e-52 209.5 337 40.9
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 4.2e-49 199.5 168 58.3
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 3.6e-48 196.4 154 64.9
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 7.9e-48 195.3 175 55.4
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 2.3e-47 193.7 154 64.3
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 5.1e-47 192.6 153 62.1
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 1.6e-40 171.0 128 73.4
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 1.1e-38 164.9 350 34.6
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 7.4e-38 162.2 115 65.2
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 2.5e-33 147.1 189 42.3
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 2.1e-32 144.1 247 36.8
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 2.6e-30 137.1 327 29.7
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 2.2e-26 124.0 350 29.7
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 1.9e-25 120.9 214 39.3
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 7.2e-25 119.0 335 30.4
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 9.4e-25 118.6 307 31.6
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 5.0e-10 69.7 81 43.2
Os05g0314700 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 1.4e-07 61.6 100 40.0


User provided reference genes

Program Settings