Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01536 Brassica carinata HOM05D000792 ORTHO05D014974 2.9e-44 181.4 87 100.0
C07p11470 Brassica napus HOM05D000792 ORTHO05D014974 1.1e-22 109.8 70 77.1
BolC7t41623H Brassica oleracea HOM05D000792 ORTHO05D014974 1.1e-22 109.8 70 77.1
BcaC06g35737 Brassica carinata HOM05D000792 ORTHO05D014974 2.4e-22 108.6 69 76.8
A03p68270 Brassica napus HOM05D000792 ORTHO05D014974 4.6e-21 104.4 70 72.9
BraA01t02641Z Brassica rapa HOM05D000792 ORTHO05D014974 4.6e-21 104.4 70 72.9
BcaB02g07909 Brassica carinata HOM05D000792 ORTHO05D001021 9.9e-16 86.7 57 77.2
A07p20690 Brassica napus HOM05D000792 ORTHO05D001021 9.9e-16 86.7 57 77.2
BraA07t29760Z Brassica rapa HOM05D000792 ORTHO05D001021 9.9e-16 86.7 57 77.2
A06p26840 Brassica napus HOM05D000792 ORTHO05D014974 1.3e-15 86.3 63 71.4
BcaC08g44509 Brassica carinata HOM05D000792 ORTHO05D001021 2.2e-15 85.5 57 75.4
A04p14170 Brassica napus HOM05D000792 ORTHO05D001021 2.2e-15 85.5 71 66.2
C04p48200 Brassica napus HOM05D000792 ORTHO05D001021 2.2e-15 85.5 71 66.2
C06p19610 Brassica napus HOM05D000792 ORTHO05D001021 2.2e-15 85.5 57 75.4
BolC4t26412H Brassica oleracea HOM05D000792 ORTHO05D001021 2.2e-15 85.5 71 66.2
BolC6t37154H Brassica oleracea HOM05D000792 ORTHO05D001021 2.2e-15 85.5 57 75.4
BraA04t17077Z Brassica rapa HOM05D000792 ORTHO05D001021 2.2e-15 85.5 71 66.2
Thhalv10027670m.g Eutrema salsugineum HOM05D000792 ORTHO05D001021 6.4e-15 84.0 57 73.7
Sp7g00770 Schrenkiella parvula HOM05D000792 ORTHO05D001021 1.4e-14 82.8 71 63.4
AL7G48380 Arabidopsis lyrata HOM05D000792 ORTHO05D001021 1.9e-14 82.4 71 63.4
AT5G41130 Arabidopsis thaliana HOM05D000792 ORTHO05D001021 1.9e-14 82.4 71 63.4
BraA06t25616Z Brassica rapa HOM05D000792 ORTHO05D014974 1.9e-14 82.4 51 80.4
BcaB06g27600 Brassica carinata HOM05D000792 ORTHO05D001021 2.4e-14 82.0 71 63.4
C06p37270 Brassica napus HOM05D024359 ORTHO05D014974 2.4e-14 82.0 48 85.4
C02p39010 Brassica napus HOM05D024359 ORTHO05D014974 1.2e-13 79.7 48 81.2
BolC2t09913H Brassica oleracea HOM05D024359 ORTHO05D014974 1.2e-13 79.7 48 81.2
A08p07340 Brassica napus HOM05D000792 ORTHO05D001021 2.1e-13 79.0 68 57.4
C08p09040 Brassica napus HOM05D000792 ORTHO05D001021 3.5e-13 78.2 59 62.7
Carub.0007s3434 Capsella rubella HOM05D000792 ORTHO05D001021 3.5e-13 78.2 57 66.7
BolC8t47750H Brassica oleracea HOM05D000792 ORTHO05D001021 6.0e-13 77.4 57 64.9
AL7G48430 Arabidopsis lyrata HOM05D000792 ORTHO05D001021 7.8e-13 77.0 57 66.7
BraA08t32748Z Brassica rapa HOM05D000792 ORTHO05D001021 7.8e-13 77.0 57 64.9
Aa31LG9G710 Aethionema arabicum HOM05D000792 ORTHO05D001021 1.0e-12 76.6 57 64.9
AT5G41120 Arabidopsis thaliana HOM05D000792 ORTHO05D001021 1.0e-12 76.6 57 66.7
BcaC07g37427 Brassica carinata HOM05D000792 ORTHO05D001021 1.0e-12 76.6 57 64.9
BcaB02g07907 Brassica carinata HOM05D000792 ORTHO05D001021 1.7e-12 75.9 62 64.5
CARHR213250 Cardamine hirsuta HOM05D000792 ORTHO05D001021 8.7e-12 73.6 57 64.9
Carub.0007s3437 Capsella rubella HOM05D000792 ORTHO05D001021 1.1e-11 73.2 57 63.2
THA.LOC104823992 Tarenaya hassleriana HOM05D000792 ORTHO05D001021 2.8e-10 68.6 57 56.1
TWI60G1375 Tripterygium wilfordii HOM05D000792 ORTHO05D001021 1.1e-09 66.6 57 59.6
THA.LOC104805313 Tarenaya hassleriana HOM05D000792 ORTHO05D001021 1.8e-09 65.9 57 57.9
CiPaw.04G002600 Carya illinoinensis HOM05D000792 ORTHO05D001021 4.0e-09 64.7 73 47.9
GSVIVG01033023001 Vitis vinifera HOM05D000792 ORTHO05D001021 4.0e-09 64.7 57 50.9
CiPaw.03G003800 Carya illinoinensis HOM05D000792 ORTHO05D001021 5.3e-09 64.3 48 64.6
vmacro05988 Vaccinium macrocarpon HOM05D000792 ORTHO05D001021 1.2e-08 63.2 57 56.1
vmacro23368 Vaccinium macrocarpon HOM05D000792 ORTHO05D001021 1.2e-08 63.2 57 56.1
CANSAT64G0925 Cannabis sativa HOM05D000792 ORTHO05D001021 2.0e-08 62.4 57 54.4
Duzib187G1490 Durio zibethinus HOM05D000792 ORTHO05D001021 2.0e-08 62.4 57 54.4
Solyc02g094430.4 Solanum lycopersicum HOM05D000792 ORTHO05D001021 2.0e-08 62.4 57 54.4
Dinv25628 Davidia involucrata HOM05D000792 ORTHO05D001021 2.6e-08 62.0 57 52.6
Prupe.3G311200 Prunus persica HOM05D000792 ORTHO05D001021 2.6e-08 62.0 57 52.6
Thecc.04G043500 Theobroma cacao HOM05D000792 ORTHO05D001021 2.6e-08 62.0 49 61.2
Ciclev10014452m.g Citrus clementina HOM05D000792 ORTHO05D001021 3.4e-08 61.6 47 66.0
Ca_08107_v3 Cicer arietinum L. HOM05D000792 ORTHO05D001021 4.4e-08 61.2 57 52.6
MD09G1005800 Malus domestica HOM05D000792 ORTHO05D001021 4.4e-08 61.2 57 52.6
Sopen02g039090 Solanum pennellii HOM05D000792 ORTHO05D001021 4.4e-08 61.2 57 52.6
Atru.chr6.2658 Acer truncatum HOM05D000792 ORTHO05D001021 5.8e-08 60.8 57 52.6
Actinidia05870 Actinidia chinensis HOM05D000792 ORTHO05D001021 5.8e-08 60.8 57 54.4
Carub.0005s0493 Capsella rubella HOM05D000792 ORTHO05D001021 7.6e-08 60.5 56 53.6
Migut.F00026 Erythranthe guttata HOM05D000792 ORTHO05D001021 7.6e-08 60.5 57 52.6
CARHR110430 Cardamine hirsuta HOM05D000792 ORTHO05D001021 9.9e-08 60.1 44 65.9
Lj7A614T43 Lonicera japonica HOM05D000792 ORTHO05D001021 9.9e-08 60.1 57 49.1
Psat3g095800 Pisum sativum HOM05D000792 ORTHO05D001021 9.9e-08 60.1 57 49.1
CSS0007645 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D001021 1.3e-07 59.7 57 52.6
Medtr7g083200 Medicago truncatula HOM05D000792 ORTHO05D001021 1.3e-07 59.7 57 50.9
Potri.001G324000 Populus trichocarpa HOM05D000792 ORTHO05D001021 1.3e-07 59.7 57 52.6
PGSC0003DMG400020199 Solanum tuberosum HOM05D000792 ORTHO05D001021 1.3e-07 59.7 48 60.4
Aa31LG2G5720 Aethionema arabicum HOM05D000792 ORTHO05D001021 1.7e-07 59.3 43 65.1
Peaxi162Scf00420g00745 Petunia axillaris HOM05D000792 ORTHO05D001021 1.7e-07 59.3 50 58.0
Sp2g15980 Schrenkiella parvula HOM05D000792 ORTHO05D001021 1.7e-07 59.3 47 61.7
AT3G26820 Arabidopsis thaliana HOM05D000792 ORTHO05D001021 2.2e-07 58.9 51 56.9
Hma1.2p1_0525F.1_g172740 Hydrangea macrophylla HOM05D000792 ORTHO05D001021 2.2e-07 58.9 57 52.6
MBI18_g12403_MAGBIO Magnolia biondii HOM05D000792 ORTHO05D001021 2.2e-07 58.9 57 49.1
Nitab4.5_0000519g0200 Nicotiana tabacum HOM05D000792 ORTHO05D001021 2.2e-07 58.9 57 50.9
QL02p070287 Quercus lobata HOM05D000792 ORTHO05D001021 2.2e-07 58.9 59 54.2
RcHm_v2.0_Chr2g0176241 Rosa chinensis HOM05D000792 ORTHO05D001021 2.2e-07 58.9 57 49.1
Sp2g15990 Schrenkiella parvula HOM05D000792 ORTHO05D001021 2.2e-07 58.9 43 65.1
Sed0001760 Sechium edule HOM05D000792 ORTHO05D001021 2.2e-07 58.9 47 57.4
AL5G15770 Arabidopsis lyrata HOM05D000792 ORTHO05D001021 2.9e-07 58.5 51 54.9
Potri.017G062200 Populus trichocarpa HOM05D000792 ORTHO05D001021 2.9e-07 58.5 57 52.6
GSVIVG01033025001 Vitis vinifera HOM05D000792 ORTHO05D001021 2.9e-07 58.5 47 57.4
Actinidia05869 Actinidia chinensis HOM05D000792 ORTHO05D001021 3.8e-07 58.2 47 59.6
ClCG05G013970 Citrullus lanatus HOM05D000792 ORTHO05D001021 3.8e-07 58.2 57 49.1
Duzib147G0486 Durio zibethinus HOM05D000792 ORTHO05D001021 3.8e-07 58.2 48 60.4
Sabra16G0206900 Salix brachista HOM05D000792 ORTHO05D001021 3.8e-07 58.2 57 50.9
Thecc.04G043300 Theobroma cacao HOM05D000792 ORTHO05D001021 3.8e-07 58.2 41 68.3
CSS0038400 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D001021 4.9e-07 57.8 48 60.4
Phvul.001G087700 Phaseolus vulgaris HOM05D000792 ORTHO05D001021 4.9e-07 57.8 57 49.1
Potri.001G324200 Populus trichocarpa HOM05D000792 ORTHO05D001021 4.9e-07 57.8 66 47.0
Potri.001G324400 Populus trichocarpa HOM05D000792 ORTHO05D001021 4.9e-07 57.8 57 50.9
SalBow4G0645 Salvia bowleyana HOM05D000792 ORTHO05D001021 4.9e-07 57.8 57 50.9
SalBow4G2028 Salvia bowleyana HOM05D000792 ORTHO05D001021 4.9e-07 57.8 57 50.9
MELO3C014937.2 Cucumis melo HOM05D000792 ORTHO05D001021 6.4e-07 57.4 57 49.1
Gohir.D11G066600 Gossypium hirsutum HOM05D000792 ORTHO05D001021 6.4e-07 57.4 46 56.5
Gorai.007G072100 Gossypium raimondii HOM05D000792 ORTHO05D001021 6.4e-07 57.4 46 56.5
Nn4g22201 Nelumbo nucifera HOM05D000792 ORTHO05D001021 6.4e-07 57.4 58 53.4
Nitab4.5_0002172g0080 Nicotiana tabacum HOM05D000792 ORTHO05D001021 6.4e-07 57.4 57 49.1
Sabra16G0206600 Salix brachista HOM05D000792 ORTHO05D001021 6.4e-07 57.4 47 59.6
Sabra16G0206800 Salix brachista HOM05D000792 ORTHO05D001021 6.4e-07 57.4 66 47.0
arahy.Tifrunner.gnm1.ann1.GM0P2Y Arachis hypogaea HOM05D000792 ORTHO05D001021 8.4e-07 57.0 49 55.1
Haze_14923 Corylus avellana HOM05D000792 ORTHO05D001021 8.4e-07 57.0 47 57.4
FvH4_6g54060 Fragaria vesca HOM05D000792 ORTHO05D001021 8.4e-07 57.0 47 55.3
FAN14G3240 Fragaria x ananassa HOM05D000792 ORTHO05D001021 8.4e-07 57.0 47 55.3
Gohir.A09G001100 Gossypium hirsutum HOM05D000792 ORTHO05D001021 8.4e-07 57.0 41 65.9
Gohir.D09G000900 Gossypium hirsutum HOM05D000792 ORTHO05D001021 8.4e-07 57.0 41 65.9
Gorai.006G001000 Gossypium raimondii HOM05D000792 ORTHO05D001021 8.4e-07 57.0 41 65.9
Lsat_1_v5_gn_4_185980 Lactuca sativa HOM05D000792 ORTHO05D001021 8.4e-07 57.0 53 49.1
MD17G1009900 Malus domestica HOM05D000792 ORTHO05D001021 8.4e-07 57.0 42 61.9
Phvul.001G087800 Phaseolus vulgaris HOM05D000792 ORTHO05D001021 8.4e-07 57.0 48 58.3
SGA_v2.0_scaffold44G16940 Striga asiatica HOM05D000792 ORTHO05D001021 8.4e-07 57.0 57 49.1
Thecc.04G043400 Theobroma cacao HOM05D000792 ORTHO05D001021 8.4e-07 57.0 46 56.5
AT3G26840 Arabidopsis thaliana HOM05D000792 ORTHO05D001021 1.1e-06 56.6 56 50.0
Ciclev10014442m.g Citrus clementina HOM05D000792 ORTHO05D001021 1.1e-06 56.6 47 57.4
CsaV3_3G026480 Cucumis sativus L. HOM05D000792 ORTHO05D001021 1.1e-06 56.6 57 49.1
Potri.001G323800 Populus trichocarpa HOM05D000792 ORTHO05D001021 1.1e-06 56.6 57 52.6
TPR.G35084 Trifolium pratense HOM05D000792 ORTHO05D001021 1.1e-06 56.6 57 45.6
BcaC03g17396 Brassica carinata HOM05D000792 ORTHO05D001021 1.4e-06 56.2 47 59.6
BcaC06g33886 Brassica carinata HOM05D000792 ORTHO05D001021 1.4e-06 56.2 47 59.6
A02p34820 Brassica napus HOM05D000792 ORTHO05D001021 1.4e-06 56.2 47 59.6
A06p41720 Brassica napus HOM05D000792 ORTHO05D001021 1.4e-06 56.2 47 59.6
C02p53390 Brassica napus HOM05D000792 ORTHO05D001021 1.4e-06 56.2 47 59.6
C07p35900 Brassica napus HOM05D000792 ORTHO05D001021 1.4e-06 56.2 47 59.6
BolC2t11415H Brassica oleracea HOM05D000792 ORTHO05D001021 1.4e-06 56.2 47 59.6
BolC7t44106H Brassica oleracea HOM05D000792 ORTHO05D001021 1.4e-06 56.2 47 59.6
BraA02t08489Z Brassica rapa HOM05D000792 ORTHO05D001021 1.4e-06 56.2 47 59.6
BraA06t27092Z Brassica rapa HOM05D000792 ORTHO05D001021 1.4e-06 56.2 47 59.6
CAN.G473.147 Capsicum annuum HOM05D000792 ORTHO05D001021 1.4e-06 56.2 47 53.2
CARHR147910 Cardamine hirsuta HOM05D000792 ORTHO05D001021 1.4e-06 56.2 56 48.2
COL.COLO4_13325 Corchorus olitorius HOM05D000792 ORTHO05D001021 1.4e-06 56.2 46 58.7
FAN02G3732 Fragaria x ananassa HOM05D000792 ORTHO05D001021 1.4e-06 56.2 47 55.3
FAN02G4305 Fragaria x ananassa HOM05D000792 ORTHO05D001021 1.4e-06 56.2 47 55.3
Glyma.16G051300 Glycine max HOM05D000792 ORTHO05D001021 1.4e-06 56.2 48 58.3
Gohir.A11G062900 Gossypium hirsutum HOM05D000792 ORTHO05D001021 1.4e-06 56.2 46 56.5
Sed0005337 Sechium edule HOM05D000792 ORTHO05D001021 1.4e-06 56.2 56 50.0
Hund12849 Selenicereus undatus HOM05D000792 ORTHO05D001021 1.4e-06 56.2 57 50.9
VMungo1383G1756 Vigna mungo HOM05D000792 ORTHO05D001021 1.4e-06 56.2 57 49.1
CAN.G134.196 Capsicum annuum HOM05D000792 ORTHO05D001021 1.9e-06 55.8 56 50.0
Cfa007185 Carpinus fangiana HOM05D000792 ORTHO05D001021 1.9e-06 55.8 47 55.3
Duzib147G1053 Durio zibethinus HOM05D000792 ORTHO05D001021 1.9e-06 55.8 46 56.5
Lj1g0010996 Lotus japonicus HOM05D000792 ORTHO05D001021 1.9e-06 55.8 57 47.4
Oeu038577.1 Olea europaea HOM05D000792 ORTHO05D001021 1.9e-06 55.8 56 51.8
AL5G15800 Arabidopsis lyrata HOM05D000792 ORTHO05D001021 2.4e-06 55.5 56 48.2
BcaB07g30206 Brassica carinata HOM05D000792 ORTHO05D001021 2.4e-06 55.5 43 62.8
A02p34830 Brassica napus HOM05D000792 ORTHO05D001021 2.4e-06 55.5 43 60.5
C02p53400 Brassica napus HOM05D000792 ORTHO05D001021 2.4e-06 55.5 43 60.5
COL.COLO4_13324 Corchorus olitorius HOM05D000792 ORTHO05D001021 2.4e-06 55.5 57 50.9
ECA232G4801 Erigeron canadensis HOM05D000792 ORTHO05D001021 2.4e-06 55.5 57 49.1
Oeu020407.1 Olea europaea HOM05D000792 ORTHO05D001021 2.4e-06 55.5 57 49.1
PSO478G3871 Papaver somniferum HOM05D000792 ORTHO05D001021 2.4e-06 55.5 57 50.9
arahy.Tifrunner.gnm1.ann1.4V9373 Arachis hypogaea HOM05D000792 ORTHO05D001021 3.2e-06 55.1 57 47.4
arahy.Tifrunner.gnm1.ann1.8FU3KM Arachis hypogaea HOM05D000792 ORTHO05D001021 3.2e-06 55.1 57 47.4
BcaC06g31041 Brassica carinata HOM05D000792 ORTHO05D001021 3.2e-06 55.1 43 60.5
Carub.0005s0491 Capsella rubella HOM05D000792 ORTHO05D001021 3.2e-06 55.1 51 52.9
Ciclev10015254m.g Citrus clementina HOM05D000792 ORTHO05D001021 3.2e-06 55.1 47 55.3
Haze_14919 Corylus avellana HOM05D000792 ORTHO05D001021 3.2e-06 55.1 47 55.3
Lj1g0021051 Lotus japonicus HOM05D000792 ORTHO05D001021 3.2e-06 55.1 59 47.5
TPR.G21116 Trifolium pratense HOM05D000792 ORTHO05D001021 3.2e-06 55.1 57 45.6
Ah.03g148350 Amaranthus hybridus HOM05D000792 ORTHO05D001021 4.2e-06 54.7 44 61.4
ATR0582G185 Amborella trichopoda HOM05D000792 ORTHO05D001021 4.2e-06 54.7 47 59.6
AL5G15810 Arabidopsis lyrata HOM05D000792 ORTHO05D001021 4.2e-06 54.7 53 49.1
CSS0016163 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D001021 4.2e-06 54.7 57 50.9
CSS0024788 Camellia sinensis var. sinensis HOM05D000792 ORTHO05D001021 4.2e-06 54.7 48 58.3
AUR62003382 Chenopodium quinoa HOM05D000792 ORTHO05D001021 4.2e-06 54.7 56 48.2
Ciclev10017437m.g Citrus clementina HOM05D000792 ORTHO05D001021 4.2e-06 54.7 47 55.3
Eucgr.I01588 Eucalyptus grandis HOM05D000792 ORTHO05D001021 4.2e-06 54.7 57 47.4
Thhalv10003731m.g Eutrema salsugineum HOM05D000792 ORTHO05D001021 4.2e-06 54.7 43 60.5
Thhalv10003736m.g Eutrema salsugineum HOM05D000792 ORTHO05D001021 4.2e-06 54.7 47 57.4
Manes.04G090600 Manihot esculenta HOM05D000792 ORTHO05D001021 4.2e-06 54.7 48 56.2
Sed0017738 Sechium edule HOM05D000792 ORTHO05D001021 4.2e-06 54.7 57 49.1
EL10Ac6g15463 Beta vulgaris HOM05D000792 ORTHO05D001021 5.4e-06 54.3 44 59.1
Glyma.19G099400 Glycine max HOM05D000792 ORTHO05D001021 5.4e-06 54.3 57 45.6
Hma1.2p1_0525F.1_g172720 Hydrangea macrophylla HOM05D000792 ORTHO05D001021 5.4e-06 54.3 66 43.9
PGR142G4037 Punica granatum HOM05D000792 ORTHO05D001021 5.4e-06 54.3 58 51.7
Hund12848 Selenicereus undatus HOM05D000792 ORTHO05D001021 5.4e-06 54.3 48 56.2
BcaNung05590 Brassica carinata HOM05D000792 ORTHO05D001021 7.1e-06 53.9 47 48.9
BraA02t08490Z Brassica rapa HOM05D000792 ORTHO05D001021 7.1e-06 53.9 43 58.1
Cpa.g.sc70.97 Carica papaya HOM05D000792 ORTHO05D001021 7.1e-06 53.9 47 55.3
AUR62029446 Chenopodium quinoa HOM05D000792 ORTHO05D001021 7.1e-06 53.9 44 59.1
Gohir.A11G063000 Gossypium hirsutum HOM05D000792 ORTHO05D001021 7.1e-06 53.9 46 56.5
HanXRQChr15g0486751 Helianthus annuus HOM05D000792 ORTHO05D001021 7.1e-06 53.9 57 49.1
SalBow4G0077 Salvia bowleyana HOM05D000792 ORTHO05D001021 7.1e-06 53.9 46 54.3
SalBow4G0653 Salvia bowleyana HOM05D000792 ORTHO05D001021 7.1e-06 53.9 46 54.3
Sp3g00080 Schrenkiella parvula HOM05D000792 ORTHO05D001021 7.1e-06 53.9 47 48.9
BcaB07g30205 Brassica carinata HOM05D000792 ORTHO05D001021 9.3e-06 53.5 43 58.1
Carub.0003s0006 Capsella rubella HOM05D000792 ORTHO05D001021 9.3e-06 53.5 47 46.8
COL.COLO4_13326 Corchorus olitorius HOM05D000792 ORTHO05D001021 9.3e-06 53.5 46 56.5
Eucgr.I01617 Eucalyptus grandis HOM05D000792 ORTHO05D001021 9.3e-06 53.5 46 56.5
QL03p000090 Quercus lobata HOM05D000792 ORTHO05D001021 9.3e-06 53.5 57 47.4
vmacro05987 Vaccinium macrocarpon HOM05D000792 ORTHO05D001021 9.3e-06 53.5 44 56.8


User provided reference genes

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